Wall clock time and date at job start Sat Mar 6 2021 15:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00182 * 2 1 4 4 O 1.20823 * 120.00039 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00008 * 180.02562 * 3 2 1 6 6 H 1.08993 * 112.84844 * 311.19741 * 5 3 2 7 7 C 1.53960 * 113.74147 * 82.39942 * 5 3 2 8 8 C 1.53782 * 87.01641 * 139.94243 * 7 5 3 9 9 H 1.09000 * 113.61413 * 89.22523 * 8 7 5 10 10 N 1.46492 * 113.61604 * 220.04677 * 8 7 5 11 11 C 1.34781 * 119.99984 * 254.13711 * 10 8 7 12 12 O 1.21279 * 119.99931 * 0.02562 * 11 10 8 13 13 C 1.50708 * 119.99858 * 179.97438 * 11 10 8 14 14 O 1.42902 * 109.46970 * 180.02562 * 13 11 10 15 15 C 1.35986 * 116.99897 * 180.02562 * 14 13 11 16 16 C 1.39150 * 120.07533 * 179.97438 * 15 14 13 17 17 O 1.35996 * 120.06970 * 0.04141 * 16 15 14 18 18 C 1.42910 * 116.99963 * 179.97438 * 17 16 15 19 19 C 1.38561 * 119.86074 * 180.02562 * 16 15 14 20 20 C 1.38247 * 119.99676 * 0.02562 * 19 16 15 21 21 C 1.50694 * 119.92713 * 180.02562 * 20 19 16 22 22 O 1.42905 * 109.47157 * 64.99867 * 21 20 19 23 23 Si 1.86303 * 109.47184 * 184.99807 * 21 20 19 24 24 C 1.38254 * 120.14245 * 359.74288 * 20 19 16 25 25 C 1.38238 * 120.15025 * 0.51541 * 24 20 19 26 26 C 1.53780 * 113.61290 * 179.97438 * 5 3 2 27 27 H 1.08990 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47157 * 300.00439 * 1 2 3 29 29 H 1.09003 * 109.46816 * 59.99728 * 1 2 3 30 30 H 1.09000 * 113.61445 * 25.42947 * 7 5 3 31 31 H 1.09000 * 113.66753 * 254.47138 * 7 5 3 32 32 H 0.96998 * 120.00427 * 74.14369 * 10 8 7 33 33 H 1.08995 * 109.47036 * 60.00274 * 13 11 10 34 34 H 1.08999 * 109.47097 * 300.00525 * 13 11 10 35 35 H 1.08998 * 109.46848 * 60.00277 * 18 17 16 36 36 H 1.09000 * 109.47018 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.46792 * 299.99909 * 18 17 16 38 38 H 1.08000 * 120.00580 * 180.02562 * 19 16 15 39 39 H 1.08998 * 109.47302 * 304.99794 * 21 20 19 40 40 H 0.96705 * 113.99969 * 179.97438 * 22 21 20 41 41 H 1.48502 * 110.00117 * 178.68421 * 23 21 20 42 42 H 1.48499 * 109.99959 * 299.99958 * 23 21 20 43 43 H 1.08000 * 119.92248 * 180.25193 * 24 20 19 44 44 H 1.08002 * 120.00519 * 179.76978 * 25 24 20 45 45 H 1.09001 * 113.60961 * 105.38843 * 26 5 3 46 46 H 1.08996 * 113.69520 * 334.49628 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0240 0.6361 0.7549 7 6 4.1946 1.1213 -1.3978 8 6 5.1821 2.2263 -0.9870 9 1 6.0819 1.8492 -0.5011 10 7 5.4722 3.1822 -2.0585 11 6 6.6593 3.1407 -2.6954 12 8 7.4871 2.3117 -2.3817 13 6 6.9576 4.1236 -3.7982 14 8 8.2679 3.8787 -4.3131 15 6 8.6957 4.6848 -5.3212 16 6 9.9615 4.5032 -5.8699 17 8 10.7731 3.5185 -5.3997 18 6 12.0586 3.3901 -6.0109 19 6 10.3931 5.3275 -6.8966 20 6 9.5669 6.3282 -7.3733 21 6 10.0377 7.2235 -8.4903 22 8 10.2142 6.4497 -9.6787 23 14 8.7689 8.5527 -8.7976 24 6 8.3074 6.5056 -6.8313 25 6 7.8728 5.6901 -5.8033 26 6 4.1078 2.7141 -0.0011 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.5284 1.4113 -2.2103 31 1 4.6667 0.1526 -1.5613 32 1 4.8101 3.8450 -2.3097 33 1 6.9055 5.1385 -3.4041 34 1 6.2257 4.0062 -4.5973 35 1 12.6170 4.3171 -5.8806 36 1 12.6029 2.5697 -5.5433 37 1 11.9363 3.1860 -7.0746 38 1 11.3749 5.1884 -7.3245 39 1 10.9858 7.6836 -8.2122 40 1 10.5166 6.9626 -10.4407 41 1 9.2359 9.4611 -9.8755 42 1 7.4716 7.9383 -9.1777 43 1 7.6634 7.2859 -7.2092 44 1 6.8899 5.8331 -5.3791 45 1 4.5100 3.0296 0.9616 46 1 3.4188 3.4411 -0.4308 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_60476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:36:58 Heat of formation + Delta-G solvation = -158.738991 kcal Electronic energy + Delta-G solvation = -30250.482100 eV Core-core repulsion = 25688.451322 eV Total energy + Delta-G solvation = -4562.030778 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.149 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.03085 -41.75065 -40.89436 -39.64689 -38.97499 -38.69934 -37.43596 -37.11555 -34.69489 -32.15551 -31.47392 -30.02614 -29.08254 -28.44688 -26.83381 -26.71858 -26.07082 -23.71397 -22.72946 -22.25826 -21.68465 -20.67812 -19.74237 -18.98944 -18.62019 -18.27226 -18.23676 -17.94197 -17.52581 -17.46592 -17.41489 -16.64280 -16.50178 -16.22960 -16.05181 -15.85346 -15.66953 -15.42954 -15.27468 -14.53314 -14.42843 -14.24860 -14.06861 -14.01281 -13.69384 -13.56745 -13.51081 -13.41401 -13.01190 -12.78576 -12.61888 -12.49851 -12.32949 -12.21671 -12.15983 -11.93610 -11.85590 -11.81168 -11.68272 -11.43607 -10.97433 -10.49106 -10.18278 -9.77960 -8.91156 -4.89475 0.16785 0.27612 1.05176 1.31930 1.42817 1.44357 1.63538 1.77336 1.97179 2.31248 2.52178 2.60805 3.23687 3.31008 3.38385 3.54407 3.64471 3.71483 3.75799 3.89173 3.90557 4.02770 4.06122 4.12940 4.18227 4.25554 4.26943 4.28390 4.32021 4.34362 4.48204 4.49854 4.57973 4.63296 4.63878 4.67100 4.68457 4.82718 4.93026 4.99753 5.05913 5.11086 5.32742 5.39106 5.44197 5.58381 5.96932 6.40033 6.53581 6.59395 6.64304 7.12059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.107 4.107 6 H 0.149 0.851 7 C -0.131 4.131 8 C 0.126 3.874 9 H 0.113 0.887 10 N -0.700 5.700 11 C 0.516 3.484 12 O -0.568 6.568 13 C 0.032 3.968 14 O -0.312 6.312 15 C 0.085 3.915 16 C 0.078 3.922 17 O -0.333 6.333 18 C 0.020 3.980 19 C -0.152 4.152 20 C -0.081 4.081 21 C -0.088 4.088 22 O -0.560 6.560 23 Si 0.772 3.228 24 C -0.114 4.114 25 C -0.160 4.160 26 C -0.115 4.115 27 H 0.126 0.874 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.421 0.579 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.395 0.605 41 H -0.289 1.289 42 H -0.292 1.292 43 H 0.154 0.846 44 H 0.176 0.824 45 H 0.100 0.900 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 4.828 0.236 5.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.126 4.126 6 H 0.167 0.833 7 C -0.169 4.169 8 C 0.021 3.979 9 H 0.131 0.869 10 N -0.354 5.354 11 C 0.302 3.698 12 O -0.446 6.446 13 C -0.046 4.046 14 O -0.225 6.225 15 C 0.040 3.960 16 C 0.033 3.967 17 O -0.247 6.247 18 C -0.074 4.074 19 C -0.171 4.171 20 C -0.082 4.082 21 C -0.196 4.196 22 O -0.370 6.370 23 Si 0.677 3.323 24 C -0.131 4.131 25 C -0.178 4.178 26 C -0.153 4.153 27 H 0.145 0.855 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.259 0.741 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.161 0.839 39 H 0.111 0.889 40 H 0.245 0.755 41 H -0.216 1.216 42 H -0.219 1.219 43 H 0.171 0.829 44 H 0.193 0.807 45 H 0.118 0.882 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.737 4.106 0.528 4.963 hybrid contribution 0.218 -0.252 -1.362 1.402 sum -2.519 3.855 -0.834 4.680 Atomic orbital electron populations 1.23526 0.75012 1.05566 1.02514 1.86525 1.24802 1.33323 1.83476 1.23954 0.92438 0.80994 0.70976 1.90662 1.67835 1.37252 1.46700 1.22461 0.85988 1.01869 1.02326 0.83312 1.23469 0.97676 1.01138 0.94666 1.22402 0.97599 0.89788 0.88157 0.86911 1.45648 1.16600 1.36522 1.36649 1.20534 0.81938 0.84415 0.82865 1.90771 1.48085 1.39488 1.66224 1.22801 0.84661 1.00354 0.96770 1.86215 1.33007 1.54674 1.48641 1.18550 0.92244 0.93751 0.91459 1.18624 0.90033 0.91933 0.96157 1.86190 1.28316 1.50081 1.60143 1.23296 0.81496 1.03838 0.98815 1.21028 1.02213 0.96771 0.97079 1.19250 0.94625 0.97259 0.97018 1.25075 1.09351 1.00053 0.85082 1.86556 1.90029 1.39073 1.21349 0.94048 0.74870 0.76460 0.86912 1.20993 0.94937 1.00223 0.96996 1.21348 1.01283 0.95469 0.99697 1.23309 0.96290 0.94549 1.01152 0.85544 0.91920 0.91952 0.88859 0.89271 0.74057 0.85181 0.85862 0.91381 0.86954 0.92168 0.83891 0.88870 0.75501 1.21633 1.21947 0.82897 0.80652 0.88157 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.82 10.56 -51.39 -0.54 -1.36 16 3 C 0.47 1.13 7.49 71.24 0.53 1.67 16 4 O -0.53 -4.13 15.65 21.97 0.34 -3.78 16 5 C -0.11 0.38 4.26 -10.95 -0.05 0.34 16 6 H 0.15 -1.04 8.14 -2.39 -0.02 -1.06 16 7 C -0.13 0.44 7.45 31.18 0.23 0.68 16 8 C 0.13 -0.39 4.21 45.51 0.19 -0.20 16 9 H 0.11 0.01 7.50 -2.39 -0.02 -0.01 16 10 N -0.70 2.95 5.36 -440.10 -2.36 0.59 16 11 C 0.52 1.62 7.91 87.66 0.69 2.31 16 12 O -0.57 -8.41 16.12 16.01 0.26 -8.16 16 13 C 0.03 -0.06 5.22 71.24 0.37 0.31 16 14 O -0.31 -2.83 9.45 -66.98 -0.63 -3.46 16 15 C 0.09 0.58 6.70 22.57 0.15 0.74 16 16 C 0.08 0.72 6.70 22.57 0.15 0.88 16 17 O -0.33 -3.88 10.28 -79.63 -0.82 -4.70 16 18 C 0.02 0.05 9.81 113.37 1.11 1.17 16 19 C -0.15 -0.83 8.67 22.35 0.19 -0.64 16 20 C -0.08 -0.22 5.38 -19.86 -0.11 -0.33 16 21 C -0.09 0.08 2.79 71.23 0.20 0.28 16 22 O -0.56 -1.15 12.81 -148.98 -1.91 -3.06 16 23 Si 0.77 -2.74 29.85 68.60 2.05 -0.70 16 24 C -0.11 0.03 8.66 22.27 0.19 0.22 16 25 C -0.16 0.08 9.04 22.35 0.20 0.29 16 26 C -0.12 0.60 7.15 31.11 0.22 0.82 16 27 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 29 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 30 H 0.09 -0.32 8.10 -2.39 -0.02 -0.34 16 31 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.42 -4.65 8.71 -92.71 -0.81 -5.46 16 33 H 0.13 -1.21 7.66 -2.39 -0.02 -1.23 16 34 H 0.12 -1.02 7.67 -2.39 -0.02 -1.03 16 35 H 0.07 -0.03 7.66 -2.39 -0.02 -0.05 16 36 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.06 0.07 7.66 -2.39 -0.02 0.06 16 38 H 0.14 0.44 6.30 -2.91 -0.02 0.42 16 39 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 40 H 0.39 -2.40 8.74 -74.05 -0.65 -3.05 16 41 H -0.29 -0.27 7.11 99.48 0.71 0.44 16 42 H -0.29 -0.80 7.04 99.48 0.70 -0.10 16 43 H 0.15 -0.79 4.85 -2.91 -0.01 -0.80 16 44 H 0.18 -1.57 6.30 -2.91 -0.02 -1.59 16 45 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.10 -0.47 7.41 -2.39 -0.02 -0.49 16 Total: 0.00 -33.29 389.74 1.50 -31.80 By element: Atomic # 1 Polarization: -16.46 SS G_CDS: -0.38 Total: -16.84 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.49 Total: 9.67 kcal Atomic # 7 Polarization: 2.95 SS G_CDS: -2.36 Total: 0.59 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -3.30 Total: -24.52 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.05 Total: -0.70 kcal Total: -33.29 1.50 -31.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_60476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.942 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds