Wall clock time and date at job start Sat Mar 6 2021 15:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00072 * 2 1 4 4 O 1.20818 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99911 * 180.02562 * 3 2 1 6 6 H 1.08993 * 112.90707 * 311.25104 * 5 3 2 7 7 C 1.53779 * 113.61465 * 82.50312 * 5 3 2 8 8 C 1.53780 * 87.08257 * 139.97892 * 7 5 3 9 9 H 1.09001 * 113.69222 * 89.12905 * 8 7 5 10 10 N 1.46496 * 113.61487 * 220.01765 * 8 7 5 11 11 C 1.34777 * 120.00271 * 252.49468 * 10 8 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 O 1.42898 * 109.47171 * 180.02562 * 13 11 10 15 15 C 1.35912 * 117.00151 * 180.02562 * 14 13 11 16 16 C 1.38787 * 120.06121 * 179.72245 * 15 14 13 17 17 Br 1.89102 * 120.03488 * 0.02562 * 16 15 14 18 18 C 1.38239 * 119.93168 * 179.76404 * 16 15 14 19 19 C 1.38240 * 120.04077 * 0.48977 * 18 16 15 20 20 C 1.50703 * 119.94232 * 179.76672 * 19 18 16 21 21 O 1.42899 * 109.47200 * 245.02005 * 20 19 18 22 22 Si 1.86306 * 109.46703 * 5.01759 * 20 19 18 23 23 C 1.38281 * 120.12246 * 359.78383 * 19 18 16 24 24 C 1.38145 * 120.06774 * 359.95770 * 23 19 18 25 25 C 1.53783 * 113.61316 * 180.02562 * 5 3 2 26 26 H 1.09002 * 109.47038 * 300.00128 * 1 2 3 27 27 H 1.08997 * 109.47462 * 59.99753 * 1 2 3 28 28 H 1.09001 * 109.47476 * 180.02562 * 1 2 3 29 29 H 1.09008 * 113.61656 * 25.43043 * 7 5 3 30 30 H 1.08998 * 113.61798 * 254.53153 * 7 5 3 31 31 H 0.97005 * 120.00266 * 72.50052 * 10 8 7 32 32 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 33 33 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 34 34 H 1.07998 * 119.98174 * 180.22826 * 18 16 15 35 35 H 1.08993 * 109.47739 * 125.01522 * 20 19 18 36 36 H 0.96705 * 114.00255 * 59.99726 * 21 20 19 37 37 H 1.48494 * 110.00147 * 58.68342 * 22 20 19 38 38 H 1.48502 * 109.99622 * 180.02562 * 22 20 19 39 39 H 1.07999 * 119.96903 * 179.97438 * 23 19 18 40 40 H 1.08006 * 120.02082 * 179.97438 * 24 23 19 41 41 H 1.08994 * 113.61465 * 105.47029 * 25 5 3 42 42 H 1.09007 * 113.61362 * 334.56263 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0249 0.6358 0.7539 7 6 4.1905 1.1238 -1.3978 8 6 5.1806 2.2270 -0.9887 9 1 6.0812 1.8496 -0.5043 10 7 5.4693 3.1834 -2.0602 11 6 6.6670 3.1622 -2.6778 12 8 7.5057 2.3511 -2.3468 13 6 6.9641 4.1465 -3.7797 14 8 8.2870 3.9248 -4.2725 15 6 8.7153 4.7347 -5.2764 16 6 9.9916 4.5788 -5.7989 17 35 11.1370 3.2384 -5.1152 18 6 10.4227 5.4008 -6.8233 19 6 9.5872 6.3838 -7.3200 20 6 10.0614 7.2822 -8.4332 21 8 10.1497 8.6262 -7.9558 22 14 11.7392 6.7180 -9.0143 23 6 8.3172 6.5446 -6.7970 24 6 7.8795 5.7223 -5.7769 25 6 4.1078 2.7142 0.0001 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5225 1.4153 -2.2084 30 1 4.6608 0.1545 -1.5636 31 1 4.7984 3.8320 -2.3251 32 1 6.8864 5.1618 -3.3907 33 1 6.2475 4.0119 -4.5899 34 1 11.4144 5.2778 -7.2329 35 1 9.3555 7.2368 -9.2624 36 1 10.7616 8.7414 -7.2159 37 1 11.6675 5.3111 -9.4837 38 1 12.2183 7.5963 -10.1117 39 1 7.6667 7.3136 -7.1867 40 1 6.8876 5.8488 -5.3688 41 1 4.5112 3.0284 0.9626 42 1 3.4171 3.4407 -0.4281 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_6201210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:37:02 Heat of formation + Delta-G solvation = -120.215981 kcal Electronic energy + Delta-G solvation = -27920.313330 eV Core-core repulsion = 23494.354843 eV Total energy + Delta-G solvation = -4425.958487 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.045 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03905 -41.61881 -40.76085 -39.48978 -38.79543 -37.44772 -37.19297 -34.70808 -33.48859 -32.13567 -30.59989 -29.88197 -29.07918 -26.83779 -26.81631 -26.21112 -24.09847 -22.77384 -22.28527 -21.71255 -20.69438 -19.57614 -18.97193 -18.47727 -18.08922 -17.93779 -17.53114 -17.42553 -17.21215 -16.49476 -16.36951 -16.22176 -15.96858 -15.61895 -15.59320 -15.17035 -14.76913 -14.50887 -14.32959 -14.27299 -14.06310 -13.92858 -13.60834 -13.50325 -13.42800 -13.02076 -12.56498 -12.40194 -12.32787 -12.27689 -12.17169 -11.87534 -11.86254 -11.85303 -11.82192 -11.44098 -11.18997 -10.98659 -10.45368 -10.18720 -9.99353 -9.31510 -5.03036 -0.03212 0.08552 0.64464 1.04580 1.28744 1.36302 1.42973 1.60049 1.74749 1.93527 2.39959 2.53085 3.22830 3.30653 3.48693 3.49467 3.57573 3.63536 3.74506 3.79656 3.83422 4.02077 4.03447 4.07391 4.09261 4.24943 4.27715 4.34422 4.45202 4.49265 4.57172 4.62868 4.63603 4.67932 4.78948 4.82071 4.92323 5.03463 5.04974 5.30419 5.32128 5.41840 5.47714 6.05149 6.42021 6.63581 6.77397 7.10451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.108 4.108 6 H 0.149 0.851 7 C -0.130 4.130 8 C 0.127 3.873 9 H 0.114 0.886 10 N -0.701 5.701 11 C 0.516 3.484 12 O -0.563 6.563 13 C 0.032 3.968 14 O -0.303 6.303 15 C 0.150 3.850 16 C -0.140 4.140 17 Br -0.048 7.048 18 C -0.053 4.053 19 C -0.152 4.152 20 C -0.053 4.053 21 O -0.551 6.551 22 Si 0.743 3.257 23 C -0.035 4.035 24 C -0.196 4.196 25 C -0.117 4.117 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.421 0.579 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.396 0.604 37 H -0.289 1.289 38 H -0.293 1.293 39 H 0.154 0.846 40 H 0.172 0.828 41 H 0.099 0.901 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 2.659 1.193 5.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.127 4.127 6 H 0.167 0.833 7 C -0.169 4.169 8 C 0.022 3.978 9 H 0.132 0.868 10 N -0.355 5.355 11 C 0.302 3.698 12 O -0.440 6.440 13 C -0.046 4.046 14 O -0.215 6.215 15 C 0.102 3.898 16 C -0.220 4.220 17 Br 0.038 6.962 18 C -0.073 4.073 19 C -0.154 4.154 20 C -0.165 4.165 21 O -0.359 6.359 22 Si 0.651 3.349 23 C -0.053 4.053 24 C -0.215 4.215 25 C -0.155 4.155 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.165 0.835 35 H 0.135 0.865 36 H 0.246 0.754 37 H -0.216 1.216 38 H -0.220 1.220 39 H 0.172 0.828 40 H 0.189 0.811 41 H 0.117 0.883 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.338 1.496 0.660 3.717 hybrid contribution -1.484 0.331 -0.335 1.557 sum -4.823 1.827 0.325 5.167 Atomic orbital electron populations 1.23524 0.75022 1.05569 1.02504 1.86525 1.24790 1.33325 1.83474 1.23969 0.92471 0.80988 0.70971 1.90662 1.67850 1.37269 1.46711 1.22437 0.85968 1.01880 1.02414 0.83330 1.23433 0.97674 1.01178 0.94585 1.22406 0.97609 0.89705 0.88094 0.86761 1.45652 1.15533 1.37316 1.37009 1.20468 0.82121 0.84303 0.82903 1.90788 1.47625 1.40214 1.65369 1.22844 0.83852 1.00623 0.97273 1.86238 1.32192 1.54559 1.48500 1.18796 0.92212 0.90592 0.88212 1.21139 0.94507 1.02222 1.04104 1.96776 1.62475 1.50547 1.86439 1.20913 0.99811 0.93200 0.93327 1.20297 0.95773 0.98534 1.00757 1.24841 1.10204 0.84560 0.96881 1.86478 1.69233 1.24459 1.55706 0.94004 0.79975 0.76319 0.84650 1.21211 0.94578 0.96586 0.92915 1.21601 1.01730 0.97059 1.01072 1.23341 0.96410 0.94553 1.01168 0.91970 0.91925 0.85542 0.88831 0.89176 0.74145 0.85205 0.85511 0.83451 0.86482 0.75406 1.21553 1.22025 0.82811 0.81094 0.88278 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.37 -0.58 10.56 -51.43 -0.54 -1.13 16 3 C 0.47 0.80 7.48 71.24 0.53 1.33 16 4 O -0.54 -3.80 15.65 21.99 0.34 -3.46 16 5 C -0.11 0.48 4.26 -11.01 -0.05 0.43 16 6 H 0.15 -1.16 8.14 -2.39 -0.02 -1.18 16 7 C -0.13 0.62 7.43 31.12 0.23 0.85 16 8 C 0.13 -0.58 4.24 45.53 0.19 -0.39 16 9 H 0.11 -0.16 7.46 -2.39 -0.02 -0.18 16 10 N -0.70 4.31 5.35 -439.98 -2.36 1.96 16 11 C 0.52 0.13 7.91 87.66 0.69 0.82 16 12 O -0.56 -6.47 16.10 16.01 0.26 -6.21 16 13 C 0.03 -0.17 5.22 71.24 0.37 0.20 16 14 O -0.30 -1.13 9.00 -73.52 -0.66 -1.79 16 15 C 0.15 0.24 6.68 22.52 0.15 0.39 16 16 C -0.14 -0.54 6.24 22.40 0.14 -0.40 16 17 Br -0.05 -0.34 33.16 -20.37 -0.68 -1.02 16 18 C -0.05 -0.01 8.40 22.27 0.19 0.18 16 19 C -0.15 0.34 5.35 -19.85 -0.11 0.23 16 20 C -0.05 0.16 2.80 71.24 0.20 0.35 16 21 O -0.55 1.50 12.83 -148.98 -1.91 -0.41 16 22 Si 0.74 -1.37 29.80 68.60 2.04 0.68 16 23 C -0.03 0.15 9.68 22.26 0.22 0.36 16 24 C -0.20 0.90 9.04 22.36 0.20 1.10 16 25 C -0.12 0.71 7.16 31.14 0.22 0.93 16 26 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 27 H 0.06 -0.13 8.13 -2.39 -0.02 -0.14 16 28 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.09 -0.46 8.09 -2.38 -0.02 -0.48 16 30 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.42 -5.32 8.73 -92.70 -0.81 -6.13 16 32 H 0.13 -1.57 7.66 -2.39 -0.02 -1.58 16 33 H 0.13 -1.48 7.66 -2.39 -0.02 -1.50 16 34 H 0.15 -0.32 4.90 -2.91 -0.01 -0.33 16 35 H 0.12 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.40 -3.99 8.70 -74.05 -0.64 -4.63 16 37 H -0.29 -1.14 7.11 99.48 0.71 -0.43 16 38 H -0.29 -1.53 7.11 99.48 0.71 -0.83 16 39 H 0.15 -1.15 8.06 -2.91 -0.02 -1.18 16 40 H 0.17 -2.02 6.30 -2.91 -0.02 -2.04 16 41 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.10 -0.54 7.41 -2.38 -0.02 -0.56 16 Total: 0.00 -28.20 380.89 0.56 -27.64 By element: Atomic # 1 Polarization: -23.48 SS G_CDS: -0.32 Total: -23.80 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 4.38 Total: 7.53 kcal Atomic # 7 Polarization: 4.31 SS G_CDS: -2.36 Total: 1.96 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -2.52 Total: -12.99 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.04 Total: 0.68 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -0.68 Total: -1.02 kcal Total: -28.20 0.56 -27.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_6201210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.574 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds