Wall clock time and date at job start Sat Mar 6 2021 15:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00296 * 2 1 4 4 O 1.20829 * 119.99527 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00247 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.91337 * 311.25476 * 5 3 2 7 7 C 1.53788 * 113.61502 * 82.50307 * 5 3 2 8 8 C 1.53783 * 87.08023 * 139.98183 * 7 5 3 9 9 H 1.09003 * 113.69206 * 89.12656 * 8 7 5 10 10 N 1.46500 * 113.61356 * 220.02009 * 8 7 5 11 11 C 1.34769 * 120.00282 * 252.49569 * 10 8 7 12 12 O 1.21290 * 120.00056 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00260 * 180.02562 * 11 10 8 14 14 N 1.46906 * 109.47221 * 180.02562 * 13 11 10 15 15 C 1.46897 * 110.99829 * 293.95430 * 14 13 11 16 16 C 1.39666 * 110.99887 * 169.99736 * 14 13 11 17 17 C 1.38891 * 120.07594 * 239.99735 * 16 14 13 18 18 C 1.50696 * 120.03962 * 0.02562 * 17 16 14 19 19 O 1.42903 * 109.47131 * 74.99376 * 18 17 16 20 20 Si 1.86292 * 109.47450 * 194.99713 * 18 17 16 21 21 C 1.38125 * 119.92615 * 180.27867 * 17 16 14 22 22 C 1.38264 * 120.07345 * 359.49275 * 21 17 16 23 23 C 1.50703 * 119.92634 * 180.27701 * 22 21 17 24 24 F 1.39901 * 109.46768 * 180.23281 * 23 22 21 25 25 F 1.39897 * 109.47126 * 300.23024 * 23 22 21 26 26 F 1.39901 * 109.47094 * 60.23566 * 23 22 21 27 27 C 1.38311 * 120.14884 * 0.51159 * 22 21 17 28 28 C 1.38085 * 120.07534 * 359.74064 * 27 22 21 29 29 C 1.53781 * 87.08264 * 334.56853 * 8 7 5 30 30 H 1.08997 * 109.47035 * 299.99459 * 1 2 3 31 31 H 1.08997 * 109.47202 * 59.99402 * 1 2 3 32 32 H 1.09006 * 109.47265 * 180.02562 * 1 2 3 33 33 H 1.08999 * 113.60792 * 25.43517 * 7 5 3 34 34 H 1.08997 * 113.61282 * 254.53029 * 7 5 3 35 35 H 0.97007 * 119.99682 * 72.50053 * 10 8 7 36 36 H 1.08994 * 109.47040 * 60.00316 * 13 11 10 37 37 H 1.09000 * 109.46697 * 300.00092 * 13 11 10 38 38 H 1.08992 * 109.47168 * 296.04622 * 15 14 13 39 39 H 1.09001 * 109.47158 * 56.04584 * 15 14 13 40 40 H 1.09006 * 109.47090 * 176.04492 * 15 14 13 41 41 H 1.09008 * 109.47144 * 315.00147 * 18 17 16 42 42 H 0.96700 * 114.00311 * 300.00591 * 19 18 17 43 43 H 1.48500 * 110.00207 * 59.99993 * 20 18 17 44 44 H 1.48510 * 110.00345 * 181.31868 * 20 18 17 45 45 H 1.08000 * 119.96840 * 179.72790 * 21 17 16 46 46 H 1.08002 * 119.96375 * 179.76909 * 27 22 21 47 47 H 1.07993 * 120.03813 * 179.97438 * 28 27 22 48 48 H 1.08999 * 113.61392 * 139.97899 * 29 8 7 49 49 H 1.08994 * 113.61796 * 270.80232 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0250 0.6357 0.7539 7 6 4.1905 1.1237 -1.3979 8 6 5.1807 2.2270 -0.9886 9 1 6.0812 1.8495 -0.5042 10 7 5.4693 3.1834 -2.0601 11 6 6.6669 3.1623 -2.6777 12 8 7.5057 2.3511 -2.3468 13 6 6.9641 4.1466 -3.7795 14 7 8.3240 3.9187 -4.2862 15 6 9.3274 4.2301 -3.2595 16 6 8.5542 4.6548 -5.4506 17 6 8.8799 4.0031 -6.6331 18 6 8.9850 2.5001 -6.6619 19 8 7.6748 1.9304 -6.6342 20 14 9.8607 1.9684 -8.2179 21 6 9.1126 4.7345 -7.7815 22 6 9.0112 6.1132 -7.7573 23 6 9.2597 6.9075 -9.0137 24 9 9.1050 8.2711 -8.7415 25 9 10.5610 6.6673 -9.4676 26 9 8.3436 6.5217 -9.9981 27 6 8.6871 6.7654 -6.5814 28 6 8.4583 6.0407 -5.4286 29 6 4.1078 2.7142 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5225 1.4153 -2.2083 34 1 4.6608 0.1545 -1.5635 35 1 4.7983 3.8320 -2.3250 36 1 6.8863 5.1618 -3.3905 37 1 6.2475 4.0121 -4.5898 38 1 9.2813 5.2916 -3.0166 39 1 9.1246 3.6433 -2.3636 40 1 10.3207 3.9863 -3.6364 41 1 9.5481 2.1585 -5.7932 42 1 7.1601 2.1655 -5.8501 43 1 11.2246 2.5543 -8.2587 44 1 9.9426 0.4866 -8.2737 45 1 9.3703 4.2287 -8.7003 46 1 8.6124 7.8427 -6.5651 47 1 8.2057 6.5505 -4.5107 48 1 4.5112 3.0288 0.9620 49 1 3.4180 3.4415 -0.4285 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_6406254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:37:05 Heat of formation + Delta-G solvation = -221.756364 kcal Electronic energy + Delta-G solvation = -38607.065955 eV Core-core repulsion = 32894.803847 eV Total energy + Delta-G solvation = -5712.262109 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.148 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -51.18824 -48.71563 -48.64683 -42.04019 -41.71102 -40.70432 -39.26738 -37.64564 -37.60525 -37.35695 -34.57592 -33.00760 -32.12654 -29.92922 -29.05293 -27.67596 -26.98909 -26.81612 -26.63853 -25.04644 -23.50125 -22.57271 -21.94856 -21.52890 -20.61031 -19.50824 -19.50054 -19.47403 -18.99134 -18.48212 -18.16889 -17.98952 -17.50994 -17.41528 -16.95533 -16.76631 -16.35343 -16.23291 -16.06747 -15.76781 -15.55622 -15.54410 -15.29328 -15.09220 -15.08343 -14.86729 -14.80654 -14.74248 -14.64686 -14.42458 -14.32623 -14.22291 -13.97132 -13.69828 -13.59005 -13.52344 -13.21697 -13.04441 -12.91953 -12.83247 -12.58095 -12.50010 -12.30843 -12.21137 -11.86336 -11.78080 -11.44982 -11.42884 -11.20430 -10.88087 -10.22091 -10.10852 -10.06726 -9.66777 -4.96946 -0.36471 0.01834 1.05051 1.30949 1.55861 1.58314 1.59960 1.64261 1.91868 2.00545 2.18608 2.63548 2.74228 2.94863 3.25147 3.33754 3.36991 3.49658 3.63475 3.66850 3.69215 3.76833 3.85034 4.00089 4.03367 4.05287 4.09939 4.18798 4.24934 4.27518 4.29850 4.35013 4.44191 4.50801 4.51516 4.59245 4.62759 4.64951 4.67814 4.84157 4.87957 4.93209 4.97882 4.98377 5.10715 5.15186 5.32756 5.38423 5.51257 5.56914 6.07076 6.53282 6.57701 6.63817 7.24352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.109 4.109 6 H 0.148 0.852 7 C -0.129 4.129 8 C 0.131 3.869 9 H 0.115 0.885 10 N -0.709 5.709 11 C 0.518 3.482 12 O -0.558 6.558 13 C 0.035 3.965 14 N -0.506 5.506 15 C 0.025 3.975 16 C 0.129 3.871 17 C -0.099 4.099 18 C -0.065 4.065 19 O -0.540 6.540 20 Si 0.785 3.215 21 C -0.061 4.061 22 C -0.185 4.185 23 C 0.509 3.491 24 F -0.177 7.177 25 F -0.181 7.181 26 F -0.177 7.177 27 C -0.055 4.055 28 C -0.139 4.139 29 C -0.118 4.118 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.416 0.584 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.371 0.629 43 H -0.265 1.265 44 H -0.293 1.293 45 H 0.150 0.850 46 H 0.158 0.842 47 H 0.160 0.840 48 H 0.097 0.903 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 2.472 3.042 5.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.128 4.128 6 H 0.166 0.834 7 C -0.168 4.168 8 C 0.026 3.974 9 H 0.133 0.867 10 N -0.362 5.362 11 C 0.304 3.696 12 O -0.435 6.435 13 C -0.094 4.094 14 N -0.227 5.227 15 C -0.121 4.121 16 C 0.035 3.965 17 C -0.100 4.100 18 C -0.174 4.174 19 O -0.347 6.347 20 Si 0.687 3.313 21 C -0.079 4.079 22 C -0.186 4.186 23 C 0.455 3.545 24 F -0.159 7.159 25 F -0.163 7.163 26 F -0.158 7.158 27 C -0.074 4.074 28 C -0.158 4.158 29 C -0.156 4.156 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.220 0.780 43 H -0.190 1.190 44 H -0.220 1.220 45 H 0.167 0.833 46 H 0.175 0.825 47 H 0.177 0.823 48 H 0.115 0.885 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.158 1.028 2.261 3.290 hybrid contribution -0.678 1.217 1.613 2.131 sum -2.836 2.245 3.873 5.300 Atomic orbital electron populations 1.23522 0.75048 1.05568 1.02479 1.86525 1.24774 1.33346 1.83475 1.24015 0.92554 0.80968 0.70935 1.90665 1.67886 1.37304 1.46763 1.22458 0.85862 1.01917 1.02551 0.83410 1.23418 0.97775 1.01290 0.94337 1.22308 0.97349 0.89623 0.88170 0.86678 1.45832 1.16267 1.37034 1.37032 1.20716 0.81639 0.84494 0.82721 1.90725 1.47273 1.40072 1.65443 1.22217 0.90660 0.98728 0.97789 1.59169 1.03156 1.56157 1.04243 1.22574 0.94494 1.00238 0.94752 1.18857 0.96459 0.90570 0.90594 1.20166 1.01050 0.96529 0.92289 1.25282 0.90183 0.90242 1.11657 1.86694 1.25832 1.74183 1.47963 0.92644 0.77805 0.78071 0.82748 1.20775 0.96505 0.92230 0.98417 1.19976 1.10550 0.94440 0.93644 1.18340 0.74079 0.77745 0.84374 1.93175 1.95351 1.33654 1.93681 1.93229 1.38415 1.94168 1.90464 1.93238 1.66832 1.90834 1.64916 1.21163 0.94021 1.01821 0.90375 1.21875 1.00956 0.93444 0.99551 1.23322 0.96659 0.94422 1.01243 0.91990 0.91958 0.85524 0.89127 0.89260 0.74678 0.88142 0.85507 0.93246 0.89949 0.91834 0.90770 0.78044 1.19031 1.22047 0.83296 0.82457 0.82273 0.88475 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.37 -0.66 10.56 -51.42 -0.54 -1.21 16 3 C 0.47 0.90 7.48 71.23 0.53 1.44 16 4 O -0.54 -4.01 15.65 21.95 0.34 -3.67 16 5 C -0.11 0.50 4.26 -11.01 -0.05 0.45 16 6 H 0.15 -1.18 8.14 -2.38 -0.02 -1.20 16 7 C -0.13 0.66 7.43 31.12 0.23 0.89 16 8 C 0.13 -0.76 4.24 45.52 0.19 -0.56 16 9 H 0.12 -0.37 7.46 -2.39 -0.02 -0.39 16 10 N -0.71 5.34 5.35 -440.03 -2.36 2.98 16 11 C 0.52 -1.75 7.52 87.66 0.66 -1.09 16 12 O -0.56 -3.03 13.93 -3.06 -0.04 -3.07 16 13 C 0.04 -0.28 4.91 85.56 0.42 0.14 16 14 N -0.51 1.57 3.19 -724.44 -2.31 -0.74 16 15 C 0.03 -0.05 9.02 127.69 1.15 1.10 16 16 C 0.13 -0.38 4.62 38.22 0.18 -0.21 16 17 C -0.10 0.01 5.28 -19.74 -0.10 -0.09 16 18 C -0.06 -0.15 2.30 71.23 0.16 0.01 16 19 O -0.54 -1.90 12.65 -148.98 -1.89 -3.78 16 20 Si 0.78 1.60 30.17 68.60 2.07 3.67 16 21 C -0.06 0.03 8.20 22.25 0.18 0.22 16 22 C -0.18 0.18 5.37 -19.84 -0.11 0.08 16 23 C 0.51 0.59 3.31 71.24 0.24 0.82 16 24 F -0.18 -0.24 15.96 44.97 0.72 0.48 16 25 F -0.18 -0.61 17.23 44.97 0.77 0.17 16 26 F -0.18 -0.44 17.24 44.97 0.78 0.33 16 27 C -0.06 0.25 9.42 22.25 0.21 0.46 16 28 C -0.14 0.86 8.66 22.40 0.19 1.05 16 29 C -0.12 0.75 7.15 31.12 0.22 0.97 16 30 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 31 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 32 H 0.13 -0.90 8.14 -2.38 -0.02 -0.92 16 33 H 0.09 -0.42 8.09 -2.39 -0.02 -0.44 16 34 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.42 -5.17 8.73 -92.70 -0.81 -5.98 16 36 H 0.10 -1.29 7.48 -2.39 -0.02 -1.31 16 37 H 0.13 -1.40 8.06 -2.39 -0.02 -1.42 16 38 H 0.05 -0.29 7.34 -2.39 -0.02 -0.31 16 39 H 0.08 0.12 5.82 -2.39 -0.01 0.11 16 40 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 41 H 0.07 0.33 7.78 -2.38 -0.02 0.31 16 42 H 0.37 0.06 8.38 -74.06 -0.62 -0.56 16 43 H -0.26 -1.21 7.11 99.48 0.71 -0.51 16 44 H -0.29 -2.65 7.11 99.48 0.71 -1.94 16 45 H 0.15 -0.42 5.12 -2.91 -0.01 -0.44 16 46 H 0.16 -1.18 7.15 -2.91 -0.02 -1.20 16 47 H 0.16 -1.77 7.14 -2.91 -0.02 -1.79 16 48 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 49 H 0.10 -0.49 7.41 -2.39 -0.02 -0.51 16 Total: 0.00 -20.68 418.86 2.70 -17.98 By element: Atomic # 1 Polarization: -19.61 SS G_CDS: -0.35 Total: -19.96 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.51 Total: 6.82 kcal Atomic # 7 Polarization: 6.91 SS G_CDS: -4.67 Total: 2.24 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -2.13 Total: -11.73 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 2.27 Total: 0.98 kcal Atomic # 14 Polarization: 1.60 SS G_CDS: 2.07 Total: 3.67 kcal Total: -20.68 2.70 -17.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_6406254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.781 kcal (2) G-P(sol) polarization free energy of solvation -20.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds