Wall clock time and date at job start Sat Mar 6 2021 15:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20831 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00152 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.84858 * 311.19414 * 5 3 2 7 7 C 1.53770 * 113.61570 * 82.50408 * 5 3 2 8 8 C 1.53776 * 87.08455 * 139.98295 * 7 5 3 9 9 H 1.08997 * 113.69396 * 89.12788 * 8 7 5 10 10 N 1.46504 * 113.61366 * 220.01950 * 8 7 5 11 11 C 1.34769 * 120.00171 * 252.49223 * 10 8 7 12 12 O 1.21658 * 119.99940 * 0.02562 * 11 10 8 13 13 C 1.46991 * 120.00296 * 180.02562 * 11 10 8 14 14 C 1.35812 * 125.13936 * 180.02562 * 13 11 10 15 15 C 1.46261 * 106.08858 * 179.74179 * 14 13 11 16 16 C 1.39776 * 134.15018 * 179.51165 * 15 14 13 17 17 C 1.50696 * 120.09242 * 0.68936 * 16 15 14 18 18 O 1.42903 * 109.47131 * 284.72120 * 17 16 15 19 19 Si 1.86305 * 109.47185 * 164.72661 * 17 16 15 20 20 C 1.36629 * 119.81264 * 180.41709 * 16 15 14 21 21 C 1.38770 * 120.49234 * 0.27159 * 20 16 15 22 22 C 1.38267 * 120.68022 * 0.02562 * 21 20 16 23 23 O 1.35966 * 120.11982 * 179.97438 * 22 21 20 24 24 C 1.42900 * 117.00155 * 359.97438 * 23 22 21 25 25 C 1.39443 * 119.75594 * 359.97438 * 22 21 20 26 26 O 1.34774 * 133.24204 * 179.97438 * 25 22 21 27 27 C 1.53780 * 87.08008 * 334.56650 * 8 7 5 28 28 H 1.09001 * 109.46965 * 60.00222 * 1 2 3 29 29 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47289 * 300.00168 * 1 2 3 31 31 H 1.09000 * 113.61954 * 25.42909 * 7 5 3 32 32 H 1.09002 * 113.61533 * 254.52979 * 7 5 3 33 33 H 0.97004 * 119.99790 * 72.49856 * 10 8 7 34 34 H 1.08002 * 126.95940 * 359.97438 * 14 13 11 35 35 H 1.08999 * 109.47358 * 44.72480 * 17 16 15 36 36 H 0.96700 * 114.00311 * 300.00591 * 18 17 16 37 37 H 1.48499 * 109.99670 * 58.67633 * 19 17 16 38 38 H 1.48497 * 110.00233 * 179.97438 * 19 17 16 39 39 H 1.07994 * 119.75354 * 180.25337 * 20 16 15 40 40 H 1.07999 * 119.66189 * 180.02562 * 21 20 16 41 41 H 1.08997 * 109.47844 * 300.00674 * 24 23 22 42 42 H 1.09006 * 109.46393 * 60.00494 * 24 23 22 43 43 H 1.08998 * 109.46945 * 180.02562 * 24 23 22 44 44 H 1.08997 * 113.61816 * 139.97860 * 27 8 7 45 45 H 1.09005 * 113.61760 * 270.80070 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0233 0.6365 0.7567 7 6 4.1917 1.1232 -1.3960 8 6 5.1815 2.2266 -0.9865 9 1 6.0817 1.8494 -0.5012 10 7 5.4710 3.1826 -2.0582 11 6 6.6691 3.1612 -2.6748 12 8 7.5102 2.3477 -2.3418 13 6 6.9598 4.1208 -3.7497 14 6 8.1276 4.1918 -4.4395 15 6 7.9632 5.2790 -5.4039 16 6 8.7868 5.8479 -6.3795 17 6 10.1764 5.3095 -6.6028 18 8 11.0319 5.7454 -5.5443 19 14 10.8320 5.9379 -8.2296 20 6 8.3262 6.8897 -7.1340 21 6 7.0480 7.3919 -6.9354 22 6 6.2184 6.8487 -5.9718 23 8 4.9682 7.3501 -5.7866 24 6 4.5758 8.4403 -6.6229 25 6 6.6686 5.7849 -5.1908 26 8 6.1071 5.0647 -4.1996 27 6 4.1078 2.7142 0.0006 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.5244 1.4144 -2.2072 32 1 4.6622 0.1539 -1.5609 33 1 4.8002 3.8311 -2.3239 34 1 8.9996 3.5688 -4.3058 35 1 10.1457 4.2201 -6.6199 36 1 11.1068 6.7066 -5.4696 37 1 10.8489 7.4228 -8.2307 38 1 12.2022 5.4146 -8.4613 39 1 8.9619 7.3258 -7.8903 40 1 6.6975 8.2156 -7.5397 41 1 5.2538 9.2795 -6.4680 42 1 4.6150 8.1295 -7.6670 43 1 3.5595 8.7435 -6.3716 44 1 4.5104 3.0292 0.9632 45 1 3.4183 3.4415 -0.4283 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_6672420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:37:11 Heat of formation + Delta-G solvation = -117.009973 kcal Electronic energy + Delta-G solvation = -31844.402074 eV Core-core repulsion = 27183.266139 eV Total energy + Delta-G solvation = -4661.135934 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.78260 -42.03636 -41.05268 -40.52286 -39.22710 -39.12759 -37.47092 -37.12240 -34.83419 -33.67736 -31.95806 -31.07892 -29.45506 -28.58692 -27.15062 -26.88076 -26.28328 -24.98071 -24.02832 -22.58056 -21.95650 -21.79915 -20.87174 -19.71991 -19.09613 -18.99774 -18.53952 -18.08089 -17.85077 -17.76792 -17.46569 -17.07425 -16.75752 -16.62136 -16.30128 -16.18735 -15.89222 -15.76335 -15.59643 -14.78836 -14.59479 -14.56754 -14.50286 -14.32200 -14.21117 -13.70524 -13.58810 -13.51170 -13.43496 -13.27177 -13.05184 -12.61566 -12.48891 -12.41246 -12.27538 -12.13274 -11.88480 -11.86594 -11.66541 -11.61686 -11.44302 -11.04131 -10.61064 -10.36853 -9.85603 -9.03011 -4.88682 -0.69936 0.07727 0.58519 1.03215 1.15273 1.30476 1.59712 1.60951 1.84041 1.96871 1.98274 2.12348 2.37352 3.13617 3.18782 3.27517 3.38549 3.53905 3.58316 3.64311 3.71799 3.79546 3.85310 3.94137 4.01097 4.15765 4.24479 4.26830 4.31104 4.40366 4.42838 4.43728 4.49714 4.51391 4.58272 4.66999 4.74822 4.79022 4.81941 4.85221 4.88330 4.92121 5.03026 5.19146 5.25033 5.31423 5.37352 5.56767 6.14494 6.26077 6.50058 6.62198 6.75421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.103 4.103 6 H 0.158 0.842 7 C -0.129 4.129 8 C 0.122 3.878 9 H 0.129 0.871 10 N -0.696 5.696 11 C 0.606 3.394 12 O -0.539 6.539 13 C -0.036 4.036 14 C -0.110 4.110 15 C -0.096 4.096 16 C -0.099 4.099 17 C -0.089 4.089 18 O -0.547 6.547 19 Si 0.781 3.219 20 C -0.089 4.089 21 C -0.165 4.165 22 C 0.136 3.864 23 O -0.334 6.334 24 C 0.014 3.986 25 C 0.021 3.979 26 O -0.183 6.183 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.416 0.584 34 H 0.174 0.826 35 H 0.116 0.884 36 H 0.386 0.614 37 H -0.263 1.263 38 H -0.305 1.305 39 H 0.166 0.834 40 H 0.179 0.821 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 2.412 -4.720 6.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.122 4.122 6 H 0.175 0.825 7 C -0.168 4.168 8 C 0.018 3.982 9 H 0.147 0.853 10 N -0.345 5.345 11 C 0.392 3.608 12 O -0.418 6.418 13 C -0.086 4.086 14 C -0.130 4.130 15 C -0.097 4.097 16 C -0.100 4.100 17 C -0.196 4.196 18 O -0.356 6.356 19 Si 0.685 3.315 20 C -0.106 4.106 21 C -0.184 4.184 22 C 0.090 3.910 23 O -0.248 6.248 24 C -0.080 4.080 25 C -0.028 4.028 26 O -0.085 6.085 27 C -0.159 4.159 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.253 0.747 34 H 0.191 0.809 35 H 0.134 0.866 36 H 0.236 0.764 37 H -0.189 1.189 38 H -0.233 1.233 39 H 0.183 0.817 40 H 0.197 0.803 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.270 1.928 -4.518 5.411 hybrid contribution -0.392 1.004 0.972 1.451 sum -2.662 2.931 -3.546 5.315 Atomic orbital electron populations 1.23533 0.75028 1.05635 1.02442 1.86521 1.24769 1.33111 1.83449 1.23983 0.92517 0.81021 0.70956 1.90674 1.67903 1.37415 1.46745 1.22422 0.85978 1.01402 1.02379 0.82490 1.23427 0.97467 1.01267 0.94616 1.22660 0.98413 0.89508 0.87660 0.85282 1.45856 1.15106 1.36911 1.36672 1.16658 0.82829 0.81464 0.79847 1.90894 1.47675 1.38584 1.64671 1.21973 0.91118 0.94549 1.00934 1.22872 0.98016 0.97850 0.94309 1.19586 0.93253 0.97657 0.99190 1.19555 0.96573 0.97665 0.96197 1.25380 0.87405 1.04779 1.02085 1.86607 1.67429 1.28703 1.52825 0.93888 0.80471 0.78556 0.78617 1.20887 0.95912 0.94876 0.98959 1.21372 0.94362 1.03495 0.99132 1.18003 0.86503 0.91790 0.94686 1.86148 1.27623 1.50586 1.60474 1.23482 1.02702 0.86880 0.94905 1.19225 0.93351 0.96776 0.93406 1.84016 1.40662 1.39542 1.44246 1.23351 0.96404 0.94907 1.01256 0.92116 0.85337 0.91955 0.89421 0.88071 0.74692 0.80853 0.86609 0.76441 1.18868 1.23293 0.81730 0.80336 0.90800 0.90415 0.86753 0.87788 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.36 -1.05 10.57 -51.36 -0.54 -1.59 16 3 C 0.47 1.76 7.48 71.24 0.53 2.30 16 4 O -0.54 -5.32 15.65 21.95 0.34 -4.97 16 5 C -0.10 0.27 4.26 -11.02 -0.05 0.23 16 6 H 0.16 -1.17 8.14 -2.39 -0.02 -1.18 16 7 C -0.13 0.31 7.43 31.12 0.23 0.54 16 8 C 0.12 -0.15 4.24 45.51 0.19 0.04 16 9 H 0.13 -0.10 7.46 -2.39 -0.02 -0.11 16 10 N -0.70 -1.25 5.35 -443.72 -2.37 -3.63 16 11 C 0.61 4.50 7.80 86.54 0.67 5.18 16 12 O -0.54 -6.79 16.43 -4.21 -0.07 -6.86 16 13 C -0.04 -0.29 7.07 24.00 0.17 -0.12 16 14 C -0.11 -0.85 10.68 23.79 0.25 -0.59 16 15 C -0.10 -0.58 6.16 -20.24 -0.12 -0.71 16 16 C -0.10 -0.11 5.26 -19.87 -0.10 -0.21 16 17 C -0.09 0.01 2.71 71.23 0.19 0.20 16 18 O -0.55 -1.82 12.88 -148.98 -1.92 -3.74 16 19 Si 0.78 -3.12 30.25 68.60 2.08 -1.04 16 20 C -0.09 0.29 8.62 22.02 0.19 0.48 16 21 C -0.17 0.49 9.03 22.40 0.20 0.70 16 22 C 0.14 0.45 6.70 22.57 0.15 0.60 16 23 O -0.33 -1.02 10.50 -93.16 -0.98 -2.00 16 24 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 25 C 0.02 0.15 7.35 23.14 0.17 0.32 16 26 O -0.18 -1.56 10.28 -13.37 -0.14 -1.70 16 27 C -0.12 0.31 7.15 31.12 0.22 0.54 16 28 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 29 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 31 H 0.09 -0.09 8.09 -2.39 -0.02 -0.11 16 32 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.42 -0.13 8.44 -92.71 -0.78 -0.92 16 34 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.12 -0.01 7.96 -2.39 -0.02 -0.03 16 36 H 0.39 -1.17 8.70 -74.06 -0.64 -1.82 16 37 H -0.26 0.82 6.69 99.48 0.67 1.48 16 38 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 39 H 0.17 -1.40 4.81 -2.91 -0.01 -1.41 16 40 H 0.18 -1.77 6.26 -2.91 -0.02 -1.79 16 41 H 0.07 -0.69 7.66 -2.39 -0.02 -0.70 16 42 H 0.08 -0.76 7.66 -2.38 -0.02 -0.78 16 43 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 44 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.09 0.00 7.42 -2.38 -0.02 -0.02 16 Total: 0.00 -24.85 387.50 1.26 -23.59 By element: Atomic # 1 Polarization: -9.38 SS G_CDS: -0.36 Total: -9.74 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.22 Total: 11.68 kcal Atomic # 7 Polarization: -1.25 SS G_CDS: -2.37 Total: -3.63 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -3.30 Total: -20.87 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: 2.08 Total: -1.04 kcal Total: -24.85 1.26 -23.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_6672420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.418 kcal (2) G-P(sol) polarization free energy of solvation -24.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds