Wall clock time and date at job start Sat Mar 6 2021 15:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00065 * 2 1 4 4 O 1.20826 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00267 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.84814 * 311.19538 * 5 3 2 7 7 C 1.53778 * 113.61136 * 82.49955 * 5 3 2 8 8 C 1.53788 * 87.08087 * 139.98460 * 7 5 3 9 9 H 1.09000 * 113.69058 * 89.12467 * 8 7 5 10 10 N 1.46502 * 113.61531 * 220.02311 * 8 7 5 11 11 C 1.34782 * 119.99286 * 252.49366 * 10 8 7 12 12 O 1.21632 * 120.00375 * 359.97438 * 11 10 8 13 13 C 1.47194 * 119.99380 * 179.97438 * 11 10 8 14 14 C 1.36010 * 123.46255 * 359.97438 * 13 11 10 15 15 S 1.70444 * 110.81590 * 180.02562 * 14 13 11 16 16 C 1.75504 * 92.44403 * 359.97438 * 15 14 13 17 17 C 1.50707 * 124.70921 * 180.02562 * 16 15 14 18 18 O 1.42903 * 109.46442 * 245.02425 * 17 16 15 19 19 Si 1.86293 * 109.47256 * 5.01992 * 17 16 15 20 20 C 1.32764 * 110.58141 * 0.26612 * 16 15 14 21 21 C 1.53780 * 113.61302 * 179.97438 * 5 3 2 22 22 H 1.08998 * 109.47136 * 299.99922 * 1 2 3 23 23 H 1.08993 * 109.47232 * 60.00157 * 1 2 3 24 24 H 1.08996 * 109.47090 * 180.02562 * 1 2 3 25 25 H 1.08998 * 113.61957 * 25.43862 * 7 5 3 26 26 H 1.09001 * 113.61904 * 254.52970 * 7 5 3 27 27 H 0.96996 * 119.99971 * 72.49168 * 10 8 7 28 28 H 1.07998 * 124.59164 * 359.97438 * 14 13 11 29 29 H 1.08999 * 109.47345 * 125.02495 * 17 16 15 30 30 H 0.96700 * 114.00311 * 60.00230 * 18 17 16 31 31 H 1.48501 * 109.99918 * 58.68485 * 19 17 16 32 32 H 1.48506 * 109.99973 * 180.02562 * 19 17 16 33 33 H 1.08002 * 123.46400 * 179.73481 * 20 16 15 34 34 H 1.08998 * 113.61283 * 105.47392 * 21 5 3 35 35 H 1.08993 * 113.61962 * 334.56224 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0234 0.6365 0.7567 7 6 4.1916 1.1231 -1.3961 8 6 5.1815 2.2266 -0.9866 9 1 6.0817 1.8493 -0.5013 10 7 5.4709 3.1826 -2.0583 11 6 6.6692 3.1611 -2.6749 12 8 7.5104 2.3483 -2.3414 13 6 6.9598 4.1213 -3.7520 14 6 6.0722 5.0583 -4.1810 15 16 6.7409 5.9955 -5.4379 16 6 8.2562 5.1113 -5.3925 17 6 9.4382 5.3878 -6.2856 18 8 9.6636 4.2637 -7.1388 19 14 9.0930 6.8958 -7.3236 20 6 8.2149 4.1617 -4.4655 21 6 4.1077 2.7142 -0.0001 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.5243 1.4143 -2.2073 26 1 4.6621 0.1538 -1.5610 27 1 4.8002 3.8310 -2.3240 28 1 5.0781 5.1901 -3.7802 29 1 10.3231 5.5627 -5.6737 30 1 8.9157 4.0497 -7.7132 31 1 8.8254 8.0648 -6.4477 32 1 10.2509 7.1787 -8.2093 33 1 9.0364 3.4902 -4.2639 34 1 4.5104 3.0297 0.9624 35 1 3.4175 3.4401 -0.4298 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_6894386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:37:17 Heat of formation + Delta-G solvation = -90.145567 kcal Electronic energy + Delta-G solvation = -21038.883716 eV Core-core repulsion = 17517.419240 eV Total energy + Delta-G solvation = -3521.464476 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.02675 -41.04719 -39.45956 -38.63193 -37.45166 -37.08086 -34.70841 -31.74720 -29.39643 -27.25584 -26.93081 -26.84582 -25.35538 -22.67187 -21.93508 -21.03511 -20.26604 -19.13592 -18.74622 -18.18863 -17.91625 -17.55607 -17.42256 -16.53724 -16.33614 -16.25611 -15.87818 -15.58601 -15.13283 -14.56631 -14.47963 -14.25602 -14.12710 -13.78659 -13.68722 -13.59769 -13.42215 -13.01674 -12.67904 -12.51204 -12.36904 -12.28039 -11.92198 -11.86078 -11.82645 -11.44328 -11.04658 -10.58259 -10.23498 -9.99536 -9.44017 -5.13767 -0.34297 0.39223 0.70112 0.81441 1.04859 1.22683 1.60746 1.64401 1.90742 2.16030 2.23003 3.22014 3.30479 3.40496 3.63496 3.66632 3.73701 3.87896 3.96332 4.04164 4.25360 4.27450 4.28249 4.41178 4.49799 4.56281 4.61445 4.68247 4.71114 4.81148 4.90711 4.98300 5.06949 5.16589 5.31979 5.44504 6.42242 6.63506 6.69238 7.10719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.105 4.105 6 H 0.151 0.849 7 C -0.129 4.129 8 C 0.124 3.876 9 H 0.115 0.885 10 N -0.702 5.702 11 C 0.578 3.422 12 O -0.580 6.580 13 C -0.184 4.184 14 C -0.191 4.191 15 S 0.251 5.749 16 C -0.249 4.249 17 C -0.037 4.037 18 O -0.552 6.552 19 Si 0.742 3.258 20 C -0.075 4.075 21 C -0.118 4.118 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.414 0.586 28 H 0.203 0.797 29 H 0.114 0.886 30 H 0.397 0.603 31 H -0.257 1.257 32 H -0.274 1.274 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 1.812 -2.272 6.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.169 0.831 7 C -0.168 4.168 8 C 0.019 3.981 9 H 0.133 0.867 10 N -0.353 5.353 11 C 0.365 3.635 12 O -0.461 6.461 13 C -0.202 4.202 14 C -0.329 4.329 15 S 0.518 5.482 16 C -0.366 4.366 17 C -0.149 4.149 18 O -0.360 6.360 19 Si 0.643 3.357 20 C -0.105 4.105 21 C -0.156 4.156 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.145 0.855 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.252 0.748 28 H 0.219 0.781 29 H 0.131 0.869 30 H 0.247 0.753 31 H -0.182 1.182 32 H -0.199 1.199 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.936 3.543 -2.814 6.696 hybrid contribution 0.296 -1.386 1.509 2.070 sum -4.640 2.157 -1.305 5.281 Atomic orbital electron populations 1.23527 0.75000 1.05587 1.02503 1.86524 1.24799 1.33222 1.83451 1.23944 0.92420 0.81017 0.70962 1.90663 1.67839 1.37304 1.46740 1.22423 0.86041 1.01653 1.02356 0.83142 1.23423 0.97583 1.01151 0.94598 1.22444 0.97720 0.89815 0.88133 0.86663 1.45688 1.15559 1.37060 1.36995 1.17913 0.81810 0.82568 0.81161 1.90791 1.47994 1.40890 1.66382 1.20109 0.96157 1.01493 1.02419 1.26178 1.05031 0.99156 1.02563 1.82882 1.02982 1.31822 1.30560 1.24901 1.02215 1.03962 1.05545 1.24686 0.95604 0.99767 0.94845 1.86506 1.44891 1.49537 1.55106 0.94189 0.87137 0.74058 0.80295 1.20989 0.96940 0.98201 0.94332 1.23329 0.96405 0.94715 1.01155 0.91978 0.91925 0.85495 0.88979 0.88962 0.74809 0.78050 0.86874 0.75296 1.18240 1.19923 0.84953 0.88264 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.76 10.56 -51.34 -0.54 -1.30 16 3 C 0.47 1.19 7.48 71.24 0.53 1.72 16 4 O -0.54 -4.27 15.65 21.96 0.34 -3.93 16 5 C -0.11 0.35 4.26 -11.01 -0.05 0.30 16 6 H 0.15 -1.05 8.14 -2.39 -0.02 -1.07 16 7 C -0.13 0.40 7.43 31.12 0.23 0.63 16 8 C 0.12 -0.25 4.24 45.51 0.19 -0.06 16 9 H 0.12 0.08 7.46 -2.39 -0.02 0.06 16 10 N -0.70 1.09 5.32 -443.54 -2.36 -1.27 16 11 C 0.58 3.24 7.79 86.59 0.67 3.92 16 12 O -0.58 -8.38 16.39 -4.13 -0.07 -8.45 16 13 C -0.18 -0.43 5.98 -19.87 -0.12 -0.54 16 14 C -0.19 0.90 10.38 67.30 0.70 1.60 16 15 S 0.25 -1.40 20.20 -56.49 -1.14 -2.54 16 16 C -0.25 0.05 5.65 24.51 0.14 0.19 16 17 C -0.04 0.02 2.94 71.24 0.21 0.23 16 18 O -0.55 -0.38 12.88 -148.98 -1.92 -2.30 16 19 Si 0.74 -2.73 30.92 68.60 2.12 -0.61 16 20 C -0.08 -0.34 9.95 22.67 0.23 -0.12 16 21 C -0.12 0.49 7.15 31.11 0.22 0.71 16 22 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 23 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 24 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H 0.09 -0.28 8.09 -2.39 -0.02 -0.30 16 26 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.41 -3.04 7.22 -92.71 -0.67 -3.71 16 28 H 0.20 -2.37 7.01 -2.91 -0.02 -2.39 16 29 H 0.11 0.09 7.96 -2.39 -0.02 0.07 16 30 H 0.40 -3.10 8.70 -74.06 -0.64 -3.75 16 31 H -0.26 0.10 7.11 99.48 0.71 0.81 16 32 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 33 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.10 -0.33 7.41 -2.39 -0.02 -0.34 16 Total: 0.00 -22.81 320.72 0.46 -22.35 By element: Atomic # 1 Polarization: -11.55 SS G_CDS: -0.13 Total: -11.69 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.16 Total: 9.73 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -2.36 Total: -1.27 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -2.19 Total: -15.97 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.12 Total: -0.61 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -1.14 Total: -2.54 kcal Total: -22.81 0.46 -22.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_6894386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.792 kcal (2) G-P(sol) polarization free energy of solvation -22.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds