Wall clock time and date at job start Sat Mar 6 2021 15:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99884 * 2 1 4 4 O 1.20825 * 119.99699 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99777 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.85266 * 311.19270 * 5 3 2 7 7 C 1.53776 * 113.69127 * 82.46574 * 5 3 2 8 8 C 1.53780 * 87.08451 * 139.98772 * 7 5 3 9 9 H 1.09004 * 113.68916 * 89.12436 * 8 7 5 10 10 N 1.46494 * 113.61649 * 220.01778 * 8 7 5 11 11 C 1.34777 * 120.00049 * 252.49320 * 10 8 7 12 12 O 1.21281 * 120.00149 * 0.02562 * 11 10 8 13 13 C 1.50702 * 119.99859 * 179.97438 * 11 10 8 14 14 N 1.46501 * 109.46912 * 180.02562 * 13 11 10 15 15 C 1.36833 * 125.06099 * 264.97953 * 14 13 11 16 16 C 1.34241 * 109.93938 * 180.02562 * 15 14 13 17 17 C 1.50699 * 126.50213 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.46972 * 255.02545 * 17 16 15 19 19 Si 1.86295 * 109.47097 * 15.02184 * 17 16 15 20 20 C 1.46488 * 106.99527 * 0.24015 * 16 15 14 21 21 C 1.39595 * 134.03517 * 180.47468 * 20 16 15 22 22 C 1.36663 * 119.76416 * 179.63886 * 21 20 16 23 23 C 1.38786 * 120.52944 * 359.67930 * 22 21 20 24 24 C 1.37781 * 120.66525 * 0.02562 * 23 22 21 25 25 C 1.37687 * 125.06521 * 84.97529 * 14 13 11 26 26 C 1.53780 * 113.60968 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.47407 * 299.99978 * 1 2 3 28 28 H 1.08998 * 109.46887 * 60.00543 * 1 2 3 29 29 H 1.08998 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09006 * 113.61693 * 25.43778 * 7 5 3 31 31 H 1.08995 * 113.61459 * 254.54254 * 7 5 3 32 32 H 0.97004 * 119.99979 * 72.50162 * 10 8 7 33 33 H 1.08997 * 109.47071 * 60.00722 * 13 11 10 34 34 H 1.08994 * 109.47211 * 300.00264 * 13 11 10 35 35 H 1.08004 * 125.03533 * 359.97438 * 15 14 13 36 36 H 1.09000 * 109.47247 * 135.02480 * 17 16 15 37 37 H 0.96696 * 114.00036 * 179.97438 * 18 17 16 38 38 H 1.48496 * 110.00262 * 300.00047 * 19 17 16 39 39 H 1.48497 * 109.99780 * 61.32038 * 19 17 16 40 40 H 1.08004 * 120.11946 * 359.34406 * 21 20 16 41 41 H 1.08006 * 119.73104 * 179.70087 * 22 21 20 42 42 H 1.08005 * 119.66246 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.11072 * 180.02562 * 24 23 22 44 44 H 1.08997 * 113.61502 * 105.38821 * 26 5 3 45 45 H 1.09001 * 113.61813 * 334.48455 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0234 0.6366 0.7567 7 6 4.1936 1.1225 -1.3951 8 6 5.1828 2.2261 -0.9849 9 1 6.0823 1.8492 -0.4981 10 7 5.4737 3.1815 -2.0566 11 6 6.6728 3.1598 -2.6716 12 8 7.5108 2.3491 -2.3380 13 6 6.9718 4.1423 -3.7745 14 7 8.3292 3.9147 -4.2764 15 6 9.4449 4.5878 -3.8586 16 6 10.5244 4.1382 -4.5178 17 6 11.9425 4.6194 -4.3492 18 8 12.3034 5.4382 -5.4634 19 14 12.0787 5.6126 -2.7789 20 6 10.0615 3.0957 -5.4369 21 6 10.6969 2.2662 -6.3626 22 6 9.9631 1.3651 -7.0818 23 6 8.5917 1.2631 -6.8946 24 6 7.9454 2.0677 -5.9818 25 6 8.6724 2.9917 -5.2387 26 6 4.1077 2.7142 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5273 1.4132 -2.2074 31 1 4.6642 0.1531 -1.5589 32 1 4.8033 3.8299 -2.3236 33 1 6.8928 5.1582 -3.3874 34 1 6.2571 4.0061 -4.5861 35 1 9.4554 5.3662 -3.1099 36 1 12.6133 3.7619 -4.2960 37 1 13.2054 5.7841 -5.4215 38 1 11.1690 6.7847 -2.8388 39 1 11.7367 4.7634 -1.6097 40 1 11.7638 2.3397 -6.5134 41 1 10.4546 0.7269 -7.8014 42 1 8.0255 0.5463 -7.4708 43 1 6.8779 1.9804 -5.8430 44 1 4.5090 3.0302 0.9627 45 1 3.4180 3.4400 -0.4311 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_9818708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:37:27 Heat of formation + Delta-G solvation = -48.759940 kcal Electronic energy + Delta-G solvation = -29532.244232 eV Core-core repulsion = 25290.468696 eV Total energy + Delta-G solvation = -4241.775537 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.65396 -42.03676 -40.87866 -39.28478 -38.09683 -37.60839 -37.46897 -34.84540 -34.15851 -31.55101 -30.37039 -29.68542 -28.94994 -26.92529 -26.90751 -25.62372 -23.89532 -23.09506 -22.35479 -21.78842 -20.80335 -20.58849 -19.08388 -18.58282 -18.29794 -18.26585 -17.93949 -17.74259 -17.49494 -16.67444 -16.51414 -16.36745 -16.19741 -15.68081 -15.52189 -15.01826 -14.93380 -14.81832 -14.64830 -14.52017 -14.30337 -14.18995 -13.79285 -13.64341 -13.63384 -13.32255 -13.05598 -12.76800 -12.65414 -12.62136 -12.48711 -12.40433 -12.06328 -11.91087 -11.89096 -11.81381 -11.50786 -11.24810 -10.63999 -10.27449 -10.17990 -9.25766 -8.73538 -4.97392 0.04850 0.57290 0.99216 1.29067 1.30318 1.32813 1.48267 1.64883 1.69547 1.97812 2.14795 2.89095 3.15508 3.23304 3.45195 3.47166 3.56893 3.58692 3.66159 3.68743 3.80494 3.95295 3.97138 4.01677 4.18603 4.21407 4.22533 4.24317 4.35802 4.40304 4.49515 4.52047 4.55326 4.61589 4.64476 4.71306 4.74125 4.83632 4.84059 4.96764 5.07408 5.26945 5.35428 5.44570 5.58782 5.65558 5.66402 6.04042 6.15331 6.33604 6.58557 6.98864 6.99805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.107 4.107 6 H 0.148 0.852 7 C -0.128 4.128 8 C 0.125 3.875 9 H 0.110 0.890 10 N -0.701 5.701 11 C 0.495 3.505 12 O -0.567 6.567 13 C 0.085 3.915 14 N -0.467 5.467 15 C 0.053 3.947 16 C -0.180 4.180 17 C -0.047 4.047 18 O -0.566 6.566 19 Si 0.786 3.214 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.102 4.102 24 C -0.136 4.136 25 C 0.090 3.910 26 C -0.117 4.117 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.420 0.580 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.175 0.825 36 H 0.075 0.925 37 H 0.399 0.601 38 H -0.281 1.281 39 H -0.300 1.300 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.150 0.850 43 H 0.134 0.866 44 H 0.097 0.903 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 1.271 0.777 2.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.126 4.126 6 H 0.166 0.834 7 C -0.166 4.166 8 C 0.020 3.980 9 H 0.128 0.872 10 N -0.354 5.354 11 C 0.281 3.719 12 O -0.445 6.445 13 C -0.040 4.040 14 N -0.150 5.150 15 C -0.073 4.073 16 C -0.187 4.187 17 C -0.156 4.156 18 O -0.375 6.375 19 Si 0.690 3.310 20 C -0.123 4.123 21 C -0.101 4.101 22 C -0.170 4.170 23 C -0.121 4.121 24 C -0.156 4.156 25 C -0.015 4.015 26 C -0.155 4.155 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.259 0.741 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.192 0.808 36 H 0.093 0.907 37 H 0.249 0.751 38 H -0.208 1.208 39 H -0.228 1.228 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.300 1.230 1.650 3.087 hybrid contribution -1.046 -0.241 -0.162 1.086 sum -3.347 0.989 1.488 3.794 Atomic orbital electron populations 1.23534 0.74942 1.05619 1.02522 1.86525 1.24849 1.33226 1.83443 1.23926 0.92395 0.81028 0.70997 1.90666 1.67823 1.37291 1.46705 1.22419 0.86100 1.01740 1.02373 0.83407 1.23404 0.97574 1.01017 0.94653 1.22372 0.97431 0.89912 0.88287 0.87200 1.45788 1.15631 1.37118 1.36857 1.21360 0.82146 0.84890 0.83528 1.90795 1.47897 1.40338 1.65490 1.21994 0.82743 1.01435 0.97804 1.43379 1.06808 1.31759 1.33052 1.21723 0.85307 0.99038 1.01210 1.20052 0.94591 1.01694 1.02384 1.24234 0.91878 0.99036 1.00472 1.86482 1.37565 1.68558 1.44879 0.94247 0.88339 0.76768 0.71639 1.19350 0.92796 0.99742 1.00440 1.20504 1.00303 0.94542 0.94703 1.20983 0.94517 1.00071 1.01412 1.21194 0.94873 0.98655 0.97375 1.20260 0.99922 0.96941 0.98508 1.18484 0.94351 0.94689 0.93997 1.23317 0.96385 0.94648 1.01119 0.91946 0.91918 0.85471 0.88774 0.89300 0.74149 0.82749 0.83507 0.80806 0.90734 0.75056 1.20798 1.22757 0.85393 0.83830 0.83220 0.84859 0.88423 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.74 10.57 -51.40 -0.54 -1.28 16 3 C 0.47 1.09 7.49 71.24 0.53 1.62 16 4 O -0.54 -4.16 15.65 21.97 0.34 -3.81 16 5 C -0.11 0.39 4.26 -11.01 -0.05 0.34 16 6 H 0.15 -1.02 8.14 -2.39 -0.02 -1.04 16 7 C -0.13 0.50 7.43 31.12 0.23 0.73 16 8 C 0.13 -0.44 4.24 45.51 0.19 -0.24 16 9 H 0.11 0.02 7.46 -2.38 -0.02 0.00 16 10 N -0.70 3.50 5.35 -440.10 -2.36 1.14 16 11 C 0.50 0.68 7.90 87.66 0.69 1.38 16 12 O -0.57 -7.06 16.02 -3.03 -0.05 -7.11 16 13 C 0.08 -0.25 6.48 85.63 0.56 0.30 16 14 N -0.47 -3.14 2.27 -520.00 -1.18 -4.32 16 15 C 0.05 0.45 9.89 83.00 0.82 1.27 16 16 C -0.18 -1.95 5.61 -18.63 -0.10 -2.05 16 17 C -0.05 -0.21 3.05 71.24 0.22 0.01 16 18 O -0.57 -2.21 12.86 -148.98 -1.92 -4.13 16 19 Si 0.79 0.19 30.79 68.60 2.11 2.30 16 20 C -0.12 -1.52 6.35 -20.20 -0.13 -1.65 16 21 C -0.08 -0.81 10.05 22.23 0.22 -0.59 16 22 C -0.15 -0.98 9.97 22.03 0.22 -0.76 16 23 C -0.10 -0.54 10.01 22.29 0.22 -0.32 16 24 C -0.14 -0.93 10.00 22.37 0.22 -0.71 16 25 C 0.09 0.94 6.80 39.03 0.27 1.21 16 26 C -0.12 0.59 7.15 31.11 0.22 0.81 16 27 H 0.06 -0.09 8.13 -2.39 -0.02 -0.10 16 28 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 29 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.09 -0.39 8.10 -2.38 -0.02 -0.41 16 31 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.42 -4.73 8.73 -92.70 -0.81 -5.54 16 33 H 0.15 -1.52 8.12 -2.39 -0.02 -1.54 16 34 H 0.15 -1.26 8.14 -2.39 -0.02 -1.28 16 35 H 0.18 0.75 6.30 -2.91 -0.02 0.73 16 36 H 0.07 0.20 7.96 -2.39 -0.02 0.18 16 37 H 0.40 -2.91 8.74 -74.06 -0.65 -3.56 16 38 H -0.28 -1.26 7.04 99.48 0.70 -0.56 16 39 H -0.30 -2.23 7.11 99.48 0.71 -1.52 16 40 H 0.13 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.14 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 43 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 44 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 45 H 0.10 -0.43 7.41 -2.39 -0.02 -0.45 16 Total: 0.00 -32.13 386.92 1.56 -30.56 By element: Atomic # 1 Polarization: -15.47 SS G_CDS: -0.39 Total: -15.86 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 5.54 Total: 2.49 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -3.54 Total: -3.18 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -2.16 Total: -16.32 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: 2.11 Total: 2.30 kcal Total: -32.13 1.56 -30.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_9818708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.195 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds