Wall clock time and date at job start Sat Mar 6 2021 15:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99330 * 2 1 4 4 O 1.20823 * 120.00389 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99567 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.90791 * 311.25185 * 5 3 2 7 7 C 1.53779 * 113.61429 * 82.50513 * 5 3 2 8 8 C 1.53779 * 87.08402 * 139.98140 * 7 5 3 9 9 H 1.08998 * 113.69354 * 89.12517 * 8 7 5 10 10 N 1.46501 * 113.61719 * 220.02087 * 8 7 5 11 11 C 1.34772 * 120.00042 * 252.49461 * 10 8 7 12 12 O 1.21626 * 120.00251 * 0.02562 * 11 10 8 13 13 C 1.47265 * 120.00041 * 179.97438 * 11 10 8 14 14 C 1.36774 * 126.94415 * 179.71234 * 13 11 10 15 15 C 1.50700 * 125.79582 * 359.97438 * 14 13 11 16 16 N 1.34655 * 108.39841 * 179.83904 * 14 13 11 17 17 C 1.36446 * 110.29701 * 0.44264 * 16 14 13 18 18 C 1.50703 * 125.57317 * 179.70804 * 17 16 14 19 19 O 1.42899 * 109.46902 * 245.02691 * 18 17 16 20 20 Si 1.86300 * 109.46765 * 5.02561 * 18 17 16 21 21 C 1.34484 * 108.85866 * 359.72860 * 17 16 14 22 22 C 1.53784 * 113.61308 * 180.02562 * 5 3 2 23 23 H 1.09008 * 109.47278 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47577 * 299.99697 * 1 2 3 25 25 H 1.08999 * 109.47611 * 59.99846 * 1 2 3 26 26 H 1.09006 * 113.61307 * 25.43343 * 7 5 3 27 27 H 1.08999 * 113.69146 * 254.53828 * 7 5 3 28 28 H 0.97005 * 120.00129 * 72.49260 * 10 8 7 29 29 H 1.08993 * 109.47611 * 90.00233 * 15 14 13 30 30 H 1.09005 * 109.46453 * 210.00216 * 15 14 13 31 31 H 1.09008 * 109.47423 * 329.99675 * 15 14 13 32 32 H 0.96996 * 124.85137 * 180.14709 * 16 14 13 33 33 H 1.08997 * 109.46904 * 125.02410 * 18 17 16 34 34 H 0.96697 * 114.00639 * 60.00000 * 19 18 17 35 35 H 1.48502 * 109.99868 * 180.02562 * 20 18 17 36 36 H 1.48504 * 110.00016 * 301.31726 * 20 18 17 37 37 H 1.07999 * 126.83697 * 180.02562 * 21 17 16 38 38 H 1.09004 * 113.61451 * 105.47354 * 22 5 3 39 39 H 1.08994 * 113.61477 * 334.56656 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 1 4.0243 0.6363 0.7558 7 6 4.1915 1.1235 -1.3961 8 6 5.1813 2.2269 -0.9866 9 1 6.0815 1.8497 -0.5013 10 7 5.4707 3.1830 -2.0582 11 6 6.6689 3.1616 -2.6748 12 8 7.5098 2.3483 -2.3421 13 6 6.9596 4.1224 -3.7524 14 6 8.1215 4.2305 -4.4660 15 6 9.3493 3.3755 -4.2859 16 7 7.9806 5.2288 -5.3586 17 6 6.7445 5.7950 -5.2444 18 6 6.2265 6.9436 -6.0711 19 8 6.0068 8.0763 -5.2280 20 14 7.4767 7.3785 -7.3821 21 6 6.0640 5.1609 -4.2730 22 6 4.1075 2.7144 0.0011 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 3.5241 1.4147 -2.2073 27 1 4.6622 0.1545 -1.5624 28 1 4.7999 3.8314 -2.3239 29 1 9.2823 2.5022 -4.9347 30 1 10.2360 3.9539 -4.5455 31 1 9.4178 3.0520 -3.2472 32 1 8.6622 5.5084 -5.9896 33 1 5.2881 6.6559 -6.5451 34 1 6.8010 8.3878 -4.7727 35 1 6.9780 8.5104 -8.2039 36 1 8.7703 7.7418 -6.7497 37 1 5.0581 5.3736 -3.9424 38 1 4.5103 3.0291 0.9639 39 1 3.4172 3.4407 -0.4278 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_9865296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:37:30 Heat of formation + Delta-G solvation = -82.395774 kcal Electronic energy + Delta-G solvation = -23405.208381 eV Core-core repulsion = 19702.190326 eV Total energy + Delta-G solvation = -3703.018056 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.49790 -41.92353 -40.48609 -38.94958 -37.89161 -37.41775 -34.55064 -32.80616 -32.06691 -29.40407 -28.90851 -27.05508 -26.80242 -25.44940 -23.68093 -22.16121 -21.47495 -21.16049 -20.17864 -18.94551 -18.74407 -17.99983 -17.75376 -17.43820 -16.92193 -16.59356 -16.46663 -16.15617 -15.78164 -15.40958 -15.00073 -14.75033 -14.53072 -14.37930 -14.19185 -13.96962 -13.83877 -13.58755 -13.45145 -13.35042 -12.99288 -12.76813 -12.62772 -12.44595 -12.30387 -12.14336 -11.85090 -11.77162 -11.41117 -10.98947 -10.61069 -10.12577 -9.81354 -9.16373 -5.05143 0.69905 1.06509 1.12540 1.26734 1.44802 1.67105 1.82713 2.06970 2.46937 2.50850 3.27085 3.33255 3.36171 3.66363 3.71462 3.77974 3.88455 4.00060 4.12774 4.23637 4.26324 4.28623 4.50300 4.53630 4.55988 4.60709 4.65812 4.68661 4.75101 4.77822 4.85833 4.93994 5.04197 5.12782 5.28823 5.33464 5.57835 5.69089 5.85930 6.39704 6.44695 6.62941 6.65849 7.33429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.104 4.104 6 H 0.153 0.847 7 C -0.128 4.128 8 C 0.128 3.872 9 H 0.118 0.882 10 N -0.709 5.709 11 C 0.590 3.410 12 O -0.581 6.581 13 C -0.267 4.267 14 C 0.121 3.879 15 C -0.096 4.096 16 N -0.535 5.535 17 C -0.021 4.021 18 C -0.049 4.049 19 O -0.541 6.541 20 Si 0.758 3.242 21 C -0.138 4.138 22 C -0.121 4.121 23 H 0.128 0.872 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.410 0.590 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.426 0.574 33 H 0.138 0.862 34 H 0.387 0.613 35 H -0.295 1.295 36 H -0.273 1.273 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -1.266 -3.142 3.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.123 4.123 6 H 0.171 0.829 7 C -0.167 4.167 8 C 0.022 3.978 9 H 0.136 0.864 10 N -0.359 5.359 11 C 0.381 3.619 12 O -0.463 6.463 13 C -0.276 4.276 14 C 0.001 3.999 15 C -0.154 4.154 16 N -0.135 5.135 17 C -0.130 4.130 18 C -0.159 4.159 19 O -0.349 6.349 20 Si 0.661 3.339 21 C -0.163 4.163 22 C -0.159 4.159 23 H 0.146 0.854 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.246 0.754 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.267 0.733 33 H 0.156 0.844 34 H 0.236 0.764 35 H -0.222 1.222 36 H -0.199 1.199 37 H 0.172 0.828 38 H 0.116 0.884 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.788 -0.929 -3.550 4.082 hybrid contribution -0.525 1.221 0.748 1.525 sum 1.263 0.292 -2.802 3.087 Atomic orbital electron populations 1.23525 0.75078 1.05591 1.02436 1.86525 1.24739 1.33161 1.83477 1.23999 0.92509 0.80998 0.70906 1.90664 1.67887 1.37398 1.46787 1.22436 0.85890 1.01553 1.02466 0.82937 1.23408 0.97656 1.01309 0.94336 1.22392 0.97543 0.89697 0.88125 0.86397 1.45669 1.16000 1.37028 1.37183 1.17596 0.81468 0.82191 0.80667 1.90724 1.47624 1.40951 1.66991 1.20203 0.97229 1.04850 1.05342 1.20586 0.97112 0.91322 0.90876 1.20626 0.91848 0.98170 1.04723 1.41703 1.14119 1.27354 1.30348 1.20589 0.86756 1.01713 1.03904 1.24663 1.10504 0.83154 0.97591 1.86633 1.38941 1.46466 1.62865 0.94529 0.74587 0.86661 0.78113 1.21966 0.99921 0.96149 0.98235 1.23342 0.96673 0.94670 1.01222 0.85391 0.92003 0.92074 0.89529 0.88743 0.75388 0.89373 0.89328 0.89911 0.73273 0.84417 0.76382 1.22164 1.19890 0.82831 0.88356 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.23 10.57 -51.44 -0.54 -1.78 16 3 C 0.47 2.04 7.48 71.24 0.53 2.58 16 4 O -0.54 -5.51 15.65 21.97 0.34 -5.16 16 5 C -0.10 0.17 4.26 -11.01 -0.05 0.12 16 6 H 0.15 -0.91 8.14 -2.39 -0.02 -0.93 16 7 C -0.13 0.17 7.43 31.12 0.23 0.40 16 8 C 0.13 -0.02 4.24 45.53 0.19 0.17 16 9 H 0.12 0.18 7.46 -2.39 -0.02 0.16 16 10 N -0.71 -1.11 5.35 -443.39 -2.37 -3.49 16 11 C 0.59 4.00 7.81 86.62 0.68 4.68 16 12 O -0.58 -7.21 14.42 -4.11 -0.06 -7.27 16 13 C -0.27 -1.11 6.29 -19.04 -0.12 -1.23 16 14 C 0.12 0.15 7.17 41.78 0.30 0.45 16 15 C -0.10 0.08 9.88 71.24 0.70 0.79 16 16 N -0.53 1.78 5.41 -171.07 -0.93 0.85 16 17 C -0.02 0.04 6.09 40.98 0.25 0.29 16 18 C -0.05 0.19 2.98 71.24 0.21 0.40 16 19 O -0.54 0.13 12.88 -148.98 -1.92 -1.79 16 20 Si 0.76 -4.55 30.96 68.60 2.12 -2.42 16 21 C -0.14 -0.13 10.45 23.62 0.25 0.12 16 22 C -0.12 0.20 7.16 31.14 0.22 0.43 16 23 H 0.13 -0.78 8.14 -2.38 -0.02 -0.80 16 24 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 25 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 26 H 0.09 -0.02 8.09 -2.38 -0.02 -0.04 16 27 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.41 -0.69 7.85 -92.70 -0.73 -1.42 16 29 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.09 -0.51 8.14 -2.38 -0.02 -0.53 16 31 H 0.08 0.34 6.47 -2.38 -0.02 0.33 16 32 H 0.43 -3.69 6.72 -92.71 -0.62 -4.31 16 33 H 0.14 -0.77 7.96 -2.39 -0.02 -0.79 16 34 H 0.39 -2.11 8.70 -74.06 -0.64 -2.76 16 35 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 36 H -0.27 0.87 7.11 99.48 0.71 1.58 16 37 H 0.15 -0.23 7.70 -2.91 -0.02 -0.25 16 38 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.09 0.04 7.41 -2.39 -0.02 0.02 16 Total: 0.00 -21.62 334.73 0.40 -21.22 By element: Atomic # 1 Polarization: -9.69 SS G_CDS: -0.85 Total: -10.54 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 4.60 Total: 10.37 kcal Atomic # 7 Polarization: 0.66 SS G_CDS: -3.30 Total: -2.63 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -2.18 Total: -15.99 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.12 Total: -2.42 kcal Total: -21.62 0.40 -21.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_9865296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.175 kcal (2) G-P(sol) polarization free energy of solvation -21.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds