Wall clock time and date at job start Sat Mar 6 2021 19:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.35448 * 126.06676 * 245.30958 * 7 2 1 9 9 N 1.35530 * 108.87723 * 179.97438 * 8 7 2 10 10 C 1.37653 * 108.64309 * 0.02562 * 9 8 7 11 11 C 1.46677 * 126.23700 * 180.02562 * 10 9 8 12 12 O 1.21700 * 120.00131 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99608 * 359.97438 * 11 10 9 14 14 C 1.46506 * 119.99527 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46630 * 179.97438 * 14 13 11 16 16 C 1.38213 * 120.00420 * 270.26874 * 15 14 13 17 17 C 1.38261 * 120.00059 * 180.02562 * 16 15 14 18 Xx 1.80998 * 119.99597 * 179.97438 * 17 16 15 19 18 F 8.99017 * 163.59292 * 295.17057 * 9 1 2 20 19 F 1.60998 * 89.99846 * 134.99922 * 18 17 16 21 20 F 1.60998 * 90.00154 * 314.99922 * 18 17 16 22 21 F 1.61007 * 89.99563 * 225.00025 * 18 17 16 23 22 F 1.60997 * 90.00122 * 44.99836 * 18 17 16 24 23 C 1.38216 * 119.99783 * 359.95719 * 17 16 15 25 24 C 1.38247 * 120.00058 * 0.02562 * 24 17 16 26 25 C 1.38204 * 120.00451 * 359.76864 * 25 24 17 27 26 C 1.37872 * 107.52961 * 359.73081 * 10 9 8 28 27 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 29 28 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 30 29 H 1.08011 * 125.56318 * 359.97438 * 8 7 2 31 30 H 0.97005 * 125.68429 * 179.97438 * 9 8 7 32 31 H 0.96999 * 120.00138 * 359.97438 * 13 11 10 33 32 H 1.08999 * 109.46925 * 299.99551 * 14 13 11 34 33 H 1.09001 * 109.46870 * 59.99667 * 14 13 11 35 34 H 1.07996 * 119.99888 * 359.97438 * 16 15 14 36 35 H 1.08002 * 119.99315 * 179.97438 * 24 17 16 37 36 H 1.08004 * 119.99550 * 179.97438 * 25 24 17 38 37 H 1.08006 * 120.00301 * 180.02562 * 26 25 24 39 38 H 1.08005 * 126.45974 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 2.6283 -0.1487 2.2469 9 7 2.9017 -1.1021 3.1706 10 6 2.3715 -2.2971 2.7397 11 6 2.4427 -3.5815 3.4445 12 8 1.9311 -4.5723 2.9570 13 7 3.0746 -3.6643 4.6321 14 6 3.1462 -4.9474 5.3357 15 6 3.9004 -4.7699 6.6282 16 6 5.2724 -4.9351 6.6561 17 6 5.9642 -4.7727 7.8421 18 9 9.3586 -5.1831 7.9116 19 9 7.9046 -3.6507 8.7609 20 9 7.6170 -6.3288 6.9964 21 9 7.6279 -5.8626 9.2251 22 9 7.8936 -4.1170 6.5323 23 6 5.2840 -4.4444 8.9996 24 6 3.9117 -4.2789 8.9716 25 6 3.2206 -4.4369 7.7853 26 6 1.7557 -2.0654 1.5282 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 2.9189 0.8896 2.3109 30 1 3.3902 -0.9653 3.9974 31 1 3.4827 -2.8747 5.0204 32 1 2.1376 -5.3015 5.5489 33 1 3.6628 -5.6760 4.7110 34 1 5.8038 -5.1917 5.7517 35 1 5.8245 -4.3180 9.9261 36 1 3.3802 -4.0227 9.8763 37 1 2.1486 -4.3072 7.7634 38 1 1.2404 -2.7945 0.9203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10974094_10543058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:35:01 Heat of formation + Delta-G solvation = 411.018453 kcal Electronic energy + Delta-G solvation = -30585.208289 eV Core-core repulsion = 25180.025047 eV Total energy + Delta-G solvation = -5405.183242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.092 amu Computer time = 15.73 seconds Orbital eigenvalues (eV) -46.01845 -42.00043 -41.51259 -40.66064 -40.10278 -40.05536 -40.01258 -39.91951 -38.64765 -37.24161 -35.03175 -34.00204 -32.85099 -31.78583 -28.70484 -27.63964 -25.79996 -23.57941 -23.53223 -22.63773 -22.55313 -21.60188 -19.33182 -18.56481 -18.45474 -18.13923 -17.62143 -17.16878 -17.14160 -16.56445 -16.40707 -16.18157 -16.07486 -15.80207 -15.48496 -14.63364 -14.53119 -14.15705 -14.03247 -13.54179 -12.99371 -12.83559 -12.57891 -12.43987 -12.38243 -12.01973 -11.96624 -11.94712 -11.12242 -10.99796 -10.93292 -10.91933 -10.87542 -10.60832 -10.40770 -10.39988 -10.17935 -10.05573 -9.89378 -9.63308 -9.52653 -9.21985 -8.60176 -8.45641 -5.95220 -2.75358 -1.99171 -1.10334 -0.91224 -0.81692 -0.40549 0.10249 0.16353 0.44158 0.55549 0.73076 0.87144 1.35754 1.56136 1.64774 1.90351 2.22153 2.41643 2.48437 2.63924 2.77477 3.01658 3.26696 3.57079 3.64783 3.79141 3.86869 3.92664 3.95992 4.07990 4.23628 4.31285 4.40020 4.61823 4.74252 4.99228 5.04655 5.17472 5.62076 5.65657 5.71077 6.51496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.066 4.066 3 Si 0.909 3.091 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.290 1.290 7 C -0.052 4.052 8 C 0.583 3.417 9 N -0.608 5.608 10 C 0.538 3.462 11 C 0.508 3.492 12 O -0.448 6.448 13 N -0.610 5.610 14 C 0.167 3.833 15 C -0.085 4.085 16 C -0.130 4.130 17 C 0.410 3.590 18 F -0.299 7.299 19 F -0.595 7.595 20 F -0.600 7.600 21 F -0.612 7.612 22 F -0.578 7.578 23 C -0.161 4.161 24 C -0.067 4.067 25 C -0.070 4.070 26 C -0.040 4.040 27 H 0.411 0.589 28 H 0.191 0.809 29 H 0.338 0.662 30 H 0.507 0.493 31 H 0.434 0.566 32 H 0.186 0.814 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.199 0.801 37 H 0.242 0.758 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -62.473 40.463 -48.996 89.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.176 4.176 3 Si 0.729 3.271 4 H -0.105 1.105 5 H -0.133 1.133 6 H -0.216 1.216 7 C -0.059 4.059 8 C 0.439 3.561 9 N -0.223 5.223 10 C 0.421 3.579 11 C 0.290 3.710 12 O -0.318 6.318 13 N -0.257 5.257 14 C 0.047 3.953 15 C -0.086 4.086 16 C -0.149 4.149 17 C 0.401 3.599 18 F -0.299 7.299 19 F -0.591 7.591 20 F -0.597 7.597 21 F -0.610 7.610 22 F -0.575 7.575 23 C -0.180 4.180 24 C -0.085 4.085 25 C -0.087 4.087 26 C -0.063 4.063 27 H 0.264 0.736 28 H 0.208 0.792 29 H 0.352 0.648 30 H 0.364 0.636 31 H 0.275 0.725 32 H 0.203 0.797 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.216 0.784 37 H 0.258 0.742 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -62.310 40.055 -49.494 89.088 hybrid contribution 3.572 -0.524 1.547 3.928 sum -58.738 39.532 -47.947 85.509 Atomic orbital electron populations 1.86928 1.14173 1.81035 1.50995 1.25436 0.86907 1.09906 0.95320 0.86461 0.82154 0.72577 0.85905 1.10452 1.13312 1.21610 1.23664 0.89366 0.94285 0.98573 1.28385 0.53499 1.00129 0.74107 1.45421 1.45105 1.05860 1.25918 1.26096 0.59127 0.86622 0.86024 1.17146 0.84619 0.86374 0.82830 1.91440 1.44025 1.32524 1.63801 1.46971 1.45160 1.15757 1.17832 1.21012 1.03923 0.83400 0.86973 1.19809 0.85338 1.04010 0.99422 1.21546 0.94656 1.02409 0.96263 1.25225 0.40935 0.97404 0.96377 1.99924 1.40902 1.94350 1.94742 1.99883 1.94546 1.76947 1.87729 1.99876 1.82442 1.87596 1.89802 1.99900 1.88253 1.78894 1.93948 1.99882 1.93122 1.99056 1.65484 1.22040 0.96632 1.01645 0.97649 1.21778 0.85236 0.97822 1.03617 1.22014 1.03448 0.95370 0.87874 1.24632 0.92487 0.98937 0.90294 0.73589 0.79218 0.64816 0.63557 0.72505 0.79721 0.87134 0.85895 0.88458 0.78403 0.74198 0.71222 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 322. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 29.15 12.88 -148.98 -1.92 27.23 16 2 C -0.07 4.20 3.02 71.23 0.22 4.41 16 3 Si 0.91 -50.42 25.89 68.60 1.78 -48.65 16 4 H -0.18 11.18 7.11 99.48 0.71 11.89 16 5 H -0.21 11.65 7.11 99.48 0.71 12.35 16 6 H -0.29 10.96 7.11 99.48 0.71 11.67 16 7 C -0.05 3.79 5.43 -20.12 -0.11 3.68 16 8 C 0.58 -46.34 10.45 83.48 0.87 -45.47 16 9 N -0.61 45.11 5.99 -183.62 -1.10 44.01 16 10 C 0.54 -35.53 7.06 40.35 0.28 -35.24 16 11 C 0.51 -24.82 7.79 86.45 0.67 -24.14 16 12 O -0.45 17.11 16.88 -4.35 -0.07 17.03 16 13 N -0.61 24.18 5.54 -470.80 -2.61 21.57 16 14 C 0.17 -3.87 5.80 85.63 0.50 -3.37 16 15 C -0.09 0.21 5.25 -19.86 -0.10 0.11 16 16 C -0.13 -3.70 8.28 22.27 0.18 -3.51 16 17 C 0.41 21.88 4.82 22.27 0.11 21.99 16 18 F -0.30 -31.44 16.66 44.97 0.75 -30.69 16 19 F -0.59 -55.40 15.31 44.97 0.69 -54.72 16 20 F -0.60 -55.49 15.31 44.97 0.69 -54.80 16 21 F -0.61 -60.01 15.31 44.97 0.69 -59.32 16 22 F -0.58 -49.46 15.31 44.97 0.69 -48.77 16 23 C -0.16 -6.35 8.62 22.27 0.19 -6.16 16 24 C -0.07 -0.61 10.05 22.26 0.22 -0.39 16 25 C -0.07 0.57 9.70 22.27 0.22 0.78 16 26 C -0.04 2.79 10.59 22.57 0.24 3.03 16 27 H 0.41 -26.51 8.70 -74.06 -0.64 -27.16 16 28 H 0.19 -12.08 7.96 -2.39 -0.02 -12.09 16 29 H 0.34 -29.84 6.21 -2.90 -0.02 -29.86 16 30 H 0.51 -38.00 8.19 -92.70 -0.76 -38.76 16 31 H 0.43 -19.64 7.59 -92.71 -0.70 -20.35 16 32 H 0.19 -6.08 8.09 -2.39 -0.02 -6.09 16 33 H 0.11 -1.92 8.09 -2.39 -0.02 -1.94 16 34 H 0.12 4.35 7.40 -2.91 -0.02 4.33 16 35 H 0.10 5.14 7.40 -2.91 -0.02 5.12 16 36 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 37 H 0.24 -6.61 8.06 -2.91 -0.02 -6.63 16 38 H 0.27 -18.88 8.06 -2.91 -0.02 -18.91 16 Total: 0.00 -391.01 357.05 2.89 -388.12 By element: Atomic # 1 Polarization: -116.56 SS G_CDS: -0.18 Total: -116.73 kcal Atomic # 6 Polarization: -87.78 SS G_CDS: 3.49 Total: -84.29 kcal Atomic # 7 Polarization: 69.29 SS G_CDS: -3.71 Total: 65.58 kcal Atomic # 8 Polarization: 46.25 SS G_CDS: -1.99 Total: 44.26 kcal Atomic # 9 Polarization: -251.80 SS G_CDS: 3.50 Total: -248.29 kcal Atomic # 14 Polarization: -50.42 SS G_CDS: 1.78 Total: -48.65 kcal Total: -391.01 2.89 -388.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10974094_10543058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 799.134 kcal (2) G-P(sol) polarization free energy of solvation -391.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 408.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -388.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 411.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.73 seconds