Wall clock time and date at job start Sat Mar 6 2021 19:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37654 * 125.67475 * 2 1 4 4 C 1.46684 * 126.23377 * 359.97438 * 3 2 1 5 5 O 1.21698 * 119.99688 * 5.37313 * 4 3 2 6 6 N 1.34768 * 119.99892 * 185.37658 * 4 3 2 7 7 C 1.46501 * 119.99886 * 185.07302 * 6 4 3 8 8 C 1.50700 * 109.47528 * 179.97438 * 7 6 4 9 9 C 1.38215 * 120.00082 * 270.28028 * 8 7 6 10 10 C 1.38254 * 119.99560 * 179.97438 * 9 8 7 11 11 C 1.38211 * 120.00807 * 359.97438 * 10 9 8 12 12 C 1.38261 * 119.99529 * 359.97438 * 11 10 9 13 Xx 1.80996 * 119.99979 * 179.97438 * 12 11 10 14 13 F 9.22250 * 133.15281 * 136.21121 * 3 1 2 15 14 F 1.61004 * 90.00028 * 314.99796 * 13 12 11 16 15 F 1.61004 * 89.99972 * 134.99796 * 13 12 11 17 16 F 1.60998 * 90.00017 * 44.99749 * 13 12 11 18 17 F 1.60998 * 89.99983 * 224.99749 * 13 12 11 19 18 C 1.38215 * 120.00139 * 359.81398 * 12 11 10 20 19 C 1.37864 * 107.53470 * 179.97438 * 3 2 1 21 20 C 1.39832 * 107.08738 * 0.02562 * 20 3 2 22 21 C 1.35456 * 107.86291 * 359.75616 * 21 20 3 23 22 C 1.50700 * 125.56210 * 180.02562 * 22 21 20 24 23 O 1.42904 * 109.46894 * 209.97416 * 23 22 21 25 24 Si 1.86293 * 109.47220 * 329.97309 * 23 22 21 26 25 H 1.48498 * 109.47181 * 60.00757 * 25 23 22 27 26 H 1.48503 * 109.47138 * 180.02562 * 25 23 22 28 27 H 1.48492 * 109.47643 * 300.00333 * 25 23 22 29 28 H 1.08997 * 109.47336 * 264.45672 * 1 2 3 30 29 H 1.08994 * 109.47077 * 24.46046 * 1 2 3 31 30 H 1.09008 * 109.46658 * 144.45811 * 1 2 3 32 31 H 0.97001 * 120.00237 * 5.07857 * 6 4 3 33 32 H 1.09000 * 109.47533 * 300.00585 * 7 6 4 34 33 H 1.09001 * 109.47159 * 60.00210 * 7 6 4 35 34 H 1.07993 * 120.00010 * 359.97438 * 9 8 7 36 35 H 1.08005 * 119.99873 * 179.97438 * 10 9 8 37 36 H 1.07996 * 120.00648 * 179.97438 * 11 10 9 38 37 H 1.07991 * 120.00257 * 180.02562 * 19 12 11 39 38 H 1.08003 * 126.46161 * 179.97438 * 20 3 2 40 39 H 1.08001 * 126.07155 * 180.02562 * 21 20 3 41 40 H 1.09000 * 109.47089 * 89.97899 * 23 22 21 42 41 H 0.96703 * 114.00112 * 59.99702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8123 2.5125 -0.0005 5 8 0.6258 2.7651 0.0977 6 7 2.7076 3.5139 -0.1098 7 6 2.2663 4.9064 0.0011 8 6 3.4521 5.8232 -0.1554 9 6 4.1832 6.2031 0.9544 10 6 5.2713 7.0437 0.8106 11 6 5.6284 7.5039 -0.4427 12 6 4.8977 7.1231 -1.5530 13 9 5.7771 8.2640 -4.6559 14 9 5.5491 9.2098 -2.5967 15 9 5.1807 6.2426 -3.7919 16 9 6.9094 7.4049 -2.8728 17 9 3.8204 8.0475 -3.5159 18 6 3.8125 6.2791 -1.4099 19 6 3.5779 0.6890 0.0006 20 6 3.5522 -0.7091 0.0003 21 6 2.2555 -1.1008 0.0051 22 6 1.7711 -2.5278 0.0071 23 8 0.5104 -2.6038 -0.6614 24 14 3.0082 -3.6049 -0.8761 25 1 4.3182 -3.5261 -0.1813 26 1 2.5305 -5.0110 -0.8746 27 1 3.1618 -3.1363 -2.2767 28 1 -0.3634 -0.0993 1.0228 29 1 -0.3633 0.9354 -0.4255 30 1 -0.3633 -0.8363 -0.5974 31 1 3.6442 3.3126 -0.2620 32 1 1.5362 5.1196 -0.7797 33 1 1.8104 5.0663 0.9782 34 1 3.9044 5.8432 1.9337 35 1 5.8424 7.3409 1.6778 36 1 6.4782 8.1609 -0.5550 37 1 3.2420 5.9813 -2.2771 38 1 4.4583 1.3146 0.0004 39 1 4.4133 -1.3609 0.0011 40 1 1.6584 -2.8718 1.0353 41 1 0.5357 -2.3123 -1.5831 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10974094_10803936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:50 Heat of formation + Delta-G solvation = 380.365041 kcal Electronic energy + Delta-G solvation = -33017.619249 eV Core-core repulsion = 27455.569156 eV Total energy + Delta-G solvation = -5562.050093 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.107 amu Computer time = 21.83 seconds Orbital eigenvalues (eV) -44.39134 -44.24482 -44.20058 -44.10281 -43.54188 -42.60169 -41.37961 -40.13074 -37.78992 -36.39126 -33.93528 -33.14272 -32.46256 -31.32170 -28.23203 -27.43635 -26.17667 -24.03240 -23.28447 -22.63754 -21.47940 -20.57644 -18.99699 -18.37276 -18.05317 -17.36067 -17.23948 -16.89683 -16.38478 -16.08678 -15.77896 -15.52583 -15.38277 -15.24260 -15.19883 -14.98773 -14.88636 -14.86241 -14.75568 -14.65766 -14.34891 -14.22494 -14.17338 -14.13598 -14.03025 -13.90740 -13.85507 -13.78563 -13.62523 -13.62156 -13.32105 -13.17549 -12.97916 -12.79566 -12.31769 -12.30781 -12.00513 -11.94299 -11.86656 -11.40839 -11.33620 -10.79740 -10.73998 -10.60412 -10.32550 -9.73927 -9.09890 -5.26639 -4.81061 -3.09750 -0.73443 -0.57417 0.35551 1.07328 1.48134 1.56338 1.65074 1.68610 1.89931 2.04345 2.30955 2.40683 2.64195 2.89112 3.29270 3.29737 3.42293 3.60180 3.61478 3.71638 3.80724 4.01923 4.23061 4.32804 4.35030 4.39434 4.54116 4.55537 4.56803 4.63222 4.74672 4.80089 4.89533 5.05306 5.10047 5.14444 5.19967 5.70484 5.99769 6.13454 6.36974 6.50668 7.05466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.402 5.402 3 C -0.082 4.082 4 C 0.594 3.406 5 O -0.578 6.578 6 N -0.707 5.707 7 C 0.164 3.836 8 C -0.043 4.043 9 C -0.054 4.054 10 C -0.029 4.029 11 C -0.104 4.104 12 C 0.319 3.681 13 F -0.219 7.219 14 F -0.160 7.160 15 F -0.162 7.162 16 F -0.154 7.154 17 F -0.168 7.168 18 C -0.103 4.103 19 C -0.124 4.124 20 C -0.221 4.221 21 C 0.010 3.990 22 C -0.063 4.063 23 O -0.551 6.551 24 Si 1.017 2.983 25 H -0.244 1.244 26 H -0.272 1.272 27 H -0.265 1.265 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.419 0.581 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.211 0.789 35 H 0.227 0.773 36 H 0.184 0.816 37 H 0.169 0.831 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.132 0.868 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -4.984 13.569 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.075 5.075 3 C -0.195 4.195 4 C 0.383 3.617 5 O -0.459 6.459 6 N -0.360 5.360 7 C 0.041 3.959 8 C -0.043 4.043 9 C -0.071 4.071 10 C -0.046 4.046 11 C -0.121 4.121 12 C 0.315 3.685 13 F -0.219 7.219 14 F -0.159 7.159 15 F -0.161 7.161 16 F -0.153 7.153 17 F -0.167 7.167 18 C -0.121 4.121 19 C -0.150 4.150 20 C -0.245 4.245 21 C -0.108 4.108 22 C -0.172 4.172 23 O -0.358 6.358 24 Si 0.839 3.161 25 H -0.168 1.168 26 H -0.197 1.197 27 H -0.189 1.189 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.257 0.743 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.228 0.772 35 H 0.243 0.757 36 H 0.201 0.799 37 H 0.186 0.814 38 H 0.193 0.807 39 H 0.180 0.820 40 H 0.150 0.850 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 0.203 -5.496 13.832 14.885 hybrid contribution 0.398 1.105 -2.299 2.581 sum 0.602 -4.391 11.533 12.356 Atomic orbital electron populations 1.22553 0.75509 1.05877 1.04389 1.43916 1.07255 1.04416 1.51916 1.20183 0.91267 0.87437 1.20584 1.17019 0.85082 0.84018 0.75590 1.90821 1.17608 1.85183 1.52281 1.45487 1.12058 1.04609 1.73846 1.20377 0.92128 0.77484 1.05865 1.19898 0.98286 0.99041 0.87092 1.22339 0.91348 0.92518 1.00927 1.22127 0.96757 0.93986 0.91729 1.22380 1.02248 1.01903 0.85605 1.27684 0.98726 1.00068 0.42051 2.00000 1.52680 1.77741 1.91508 1.99920 1.78124 1.68237 1.69619 1.99920 1.67687 1.53091 1.95372 1.99920 1.44283 1.95914 1.75156 1.99920 1.30554 1.88785 1.97417 1.21764 0.94598 0.95310 1.00411 1.21671 0.94628 0.95403 1.03330 1.20994 0.95431 0.96192 1.11837 1.21440 0.91240 0.89756 1.08362 1.25028 0.93982 0.93605 1.04588 1.86475 1.30293 1.88818 1.30221 0.84727 0.76374 0.76422 0.78608 1.16751 1.19699 1.18866 0.91061 0.89565 0.86695 0.74323 0.89921 0.86232 0.77211 0.75653 0.79927 0.81406 0.80684 0.82031 0.85026 0.76124 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 375. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.00 10.21 127.77 1.30 1.31 16 2 N -0.40 -0.34 3.16 -519.71 -1.64 -1.98 16 3 C -0.08 0.03 6.88 40.35 0.28 0.31 16 4 C 0.59 -0.58 7.77 86.45 0.67 0.09 16 5 O -0.58 -3.52 14.63 -4.34 -0.06 -3.59 16 6 N -0.71 7.03 5.52 -470.81 -2.60 4.43 16 7 C 0.16 -2.13 5.80 85.63 0.50 -1.63 16 8 C -0.04 0.68 5.25 -19.86 -0.10 0.58 16 9 C -0.05 1.22 9.70 22.27 0.22 1.44 16 10 C -0.03 0.65 10.05 22.27 0.22 0.87 16 11 C -0.10 1.24 8.62 22.27 0.19 1.44 16 12 C 0.32 -0.99 4.82 22.27 0.11 -0.88 16 13 F -0.22 -5.73 16.67 44.97 0.75 -4.98 16 14 F -0.16 -2.31 15.31 44.97 0.69 -1.62 16 15 F -0.16 -2.44 15.31 44.97 0.69 -1.75 16 16 F -0.15 -2.11 15.32 44.97 0.69 -1.42 16 17 F -0.17 -2.67 15.31 44.97 0.69 -1.98 16 18 C -0.10 0.85 8.28 22.27 0.18 1.04 16 19 C -0.12 0.55 10.35 22.57 0.23 0.79 16 20 C -0.22 0.67 9.37 22.01 0.21 0.88 16 21 C 0.01 -0.02 6.15 41.34 0.25 0.24 16 22 C -0.06 0.29 2.99 71.24 0.21 0.50 16 23 O -0.55 2.09 10.11 -148.98 -1.51 0.58 16 24 Si 1.02 -5.12 26.55 68.60 1.82 -3.30 16 25 H -0.24 1.34 6.79 99.48 0.68 2.01 16 26 H -0.27 0.44 7.11 99.48 0.71 1.14 16 27 H -0.26 0.72 7.11 99.48 0.71 1.43 16 28 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.09 0.26 6.13 -2.39 -0.01 0.25 16 30 H 0.11 -0.35 5.23 -2.38 -0.01 -0.37 16 31 H 0.42 -6.13 7.41 -92.71 -0.69 -6.82 16 32 H 0.08 -0.79 8.09 -2.39 -0.02 -0.81 16 33 H 0.12 -1.86 8.09 -2.39 -0.02 -1.88 16 34 H 0.21 -6.19 8.06 -2.91 -0.02 -6.21 16 35 H 0.23 -6.78 8.06 -2.91 -0.02 -6.81 16 36 H 0.18 -2.13 7.40 -2.91 -0.02 -2.15 16 37 H 0.17 -0.93 7.40 -2.92 -0.02 -0.95 16 38 H 0.18 -2.05 7.49 -2.91 -0.02 -2.07 16 39 H 0.16 -1.04 6.65 -2.91 -0.02 -1.06 16 40 H 0.13 -0.83 7.96 -2.39 -0.02 -0.85 16 41 H 0.39 -3.49 8.29 -74.06 -0.61 -4.11 16 Total: 0.00 -42.42 369.52 4.54 -37.88 By element: Atomic # 1 Polarization: -29.77 SS G_CDS: 0.55 Total: -29.22 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 4.48 Total: 6.96 kcal Atomic # 7 Polarization: 6.69 SS G_CDS: -4.24 Total: 2.44 kcal Atomic # 8 Polarization: -1.43 SS G_CDS: -1.57 Total: -3.00 kcal Atomic # 9 Polarization: -15.27 SS G_CDS: 3.50 Total: -11.76 kcal Atomic # 14 Polarization: -5.12 SS G_CDS: 1.82 Total: -3.30 kcal Total: -42.42 4.54 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10974094_10803936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 418.241 kcal (2) G-P(sol) polarization free energy of solvation -42.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 375.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 380.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.83 seconds