Wall clock time and date at job start Sat Mar 6 2021 19:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.36449 * 120.29665 * 120.27292 * 7 2 1 9 9 C 1.40095 * 119.25251 * 180.02562 * 8 7 2 10 10 C 1.40853 * 132.86501 * 179.97438 * 9 8 7 11 11 C 1.46565 * 126.58041 * 0.02562 * 10 9 8 12 12 O 1.21717 * 119.99888 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00103 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00094 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47089 * 179.97438 * 14 13 11 16 16 C 1.38215 * 119.99523 * 270.27099 * 15 14 13 17 17 C 1.38263 * 119.99762 * 179.97438 * 16 15 14 18 Xx 1.80993 * 120.00176 * 179.97438 * 17 16 15 19 18 F 9.15893 * 154.76973 * 331.09801 * 10 1 2 20 19 F 1.61001 * 90.00098 * 135.00003 * 18 17 16 21 20 F 1.61001 * 89.99901 * 315.00003 * 18 17 16 22 21 F 1.61001 * 90.00277 * 225.00392 * 18 17 16 23 22 F 1.61005 * 90.00070 * 45.00053 * 18 17 16 24 23 C 1.38211 * 119.99849 * 359.95973 * 17 16 15 25 24 C 1.38264 * 120.00095 * 0.02562 * 24 17 16 26 25 C 1.38210 * 119.99540 * 359.77262 * 25 24 17 27 26 C 1.40555 * 106.83852 * 180.02562 * 10 9 8 28 27 N 1.30732 * 108.74755 * 359.97438 * 27 10 9 29 28 N 1.36575 * 120.22956 * 359.97438 * 9 8 7 30 29 C 1.36237 * 120.08208 * 359.96417 * 29 9 8 31 30 C 1.35179 * 120.70807 * 359.78763 * 30 29 9 32 31 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 33 32 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 34 33 H 1.07998 * 120.37278 * 359.97438 * 8 7 2 35 34 H 0.97002 * 119.99961 * 359.97438 * 13 11 10 36 35 H 1.08998 * 109.47323 * 299.99691 * 14 13 11 37 36 H 1.09001 * 109.47102 * 60.00350 * 14 13 11 38 37 H 1.08003 * 120.00669 * 359.97438 * 16 15 14 39 38 H 1.08006 * 120.00117 * 179.97438 * 24 17 16 40 39 H 1.07999 * 119.99921 * 179.97438 * 25 24 17 41 40 H 1.08007 * 119.99422 * 179.97438 * 26 25 24 42 41 H 1.08005 * 125.62214 * 179.97438 * 27 10 9 43 42 H 1.08008 * 119.64450 * 179.97438 * 30 29 9 44 43 H 1.08000 * 119.84442 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 2.7207 -1.8171 1.1122 9 6 3.1750 -2.4609 2.2706 10 6 3.9824 -3.5955 2.4822 11 6 4.5890 -4.4408 1.4499 12 8 4.4125 -4.1853 0.2730 13 7 5.3422 -5.5009 1.8038 14 6 5.9480 -6.3462 0.7719 15 6 6.7338 -7.4529 1.4267 16 6 8.0677 -7.2639 1.7356 17 6 8.7886 -8.2791 2.3368 18 9 12.0897 -7.8117 3.1002 19 9 10.2930 -8.6881 4.1909 20 9 10.7779 -7.3757 1.2907 21 9 10.8800 -9.4856 2.1404 22 9 10.1911 -6.5782 3.3410 23 6 8.1751 -9.4825 2.6296 24 6 6.8407 -9.6713 2.3209 25 6 6.1191 -8.6550 1.7237 26 6 4.0948 -3.7614 3.8734 27 7 3.4174 -2.8131 4.4658 28 7 2.8303 -1.9833 3.5028 29 6 2.0427 -0.8769 3.6105 30 6 1.5969 -0.2367 2.5065 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5139 -0.8900 33 1 2.9916 -2.1930 0.1366 34 1 5.4831 -5.7043 2.7417 35 1 5.1643 -6.7764 0.1484 36 1 6.6145 -5.7441 0.1543 37 1 8.5470 -6.3233 1.5074 38 1 8.7383 -10.2756 3.0989 39 1 6.3615 -10.6118 2.5493 40 1 5.0768 -8.8028 1.4821 41 1 4.6493 -4.5434 4.3709 42 1 1.7740 -0.5055 4.5885 43 1 0.9736 0.6394 2.6081 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10974094_11618758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:12 Heat of formation + Delta-G solvation = 431.541353 kcal Electronic energy + Delta-G solvation = -37159.003758 eV Core-core repulsion = 31149.068504 eV Total energy + Delta-G solvation = -6009.935254 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 405.102 amu Computer time = 21.69 seconds Orbital eigenvalues (eV) -44.38384 -44.24113 -44.19180 -44.09936 -43.52957 -43.30680 -41.39155 -40.23092 -39.28127 -37.19362 -36.20875 -34.22928 -33.08689 -32.42869 -32.09408 -30.42286 -27.96434 -26.89187 -24.94473 -24.03375 -23.72256 -23.07146 -22.51138 -21.31290 -19.22996 -18.59525 -18.26125 -17.94415 -17.54872 -17.32129 -16.97401 -16.92371 -16.55096 -15.95205 -15.80339 -15.67104 -15.40073 -15.28630 -15.23542 -15.08101 -14.97719 -14.91914 -14.76167 -14.56185 -14.31274 -14.20211 -14.16707 -14.11225 -14.03442 -14.00546 -13.90212 -13.75047 -13.61980 -13.60880 -13.49150 -13.30073 -13.20386 -12.76839 -12.40144 -12.29070 -12.19081 -12.08982 -11.93504 -11.83135 -11.53725 -11.40614 -11.18705 -10.77826 -10.75780 -10.62472 -10.26657 -10.20757 -8.79388 -5.25883 -4.80255 -3.08422 -0.71653 -0.56352 -0.55042 -0.12052 1.01778 1.03812 1.12450 1.45361 1.57613 1.78557 1.93435 2.07567 2.33878 2.49457 2.66499 2.91802 3.10919 3.26747 3.33351 3.44576 3.45971 3.62931 3.63593 3.73171 3.80950 3.88873 3.98547 4.21449 4.26880 4.35505 4.38654 4.43626 4.59074 4.61723 4.69300 4.76262 4.80398 4.92614 5.11596 5.12723 5.16786 5.29007 5.33172 5.66257 6.29092 6.51727 6.70326 7.24460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.079 4.079 3 Si 0.985 3.015 4 H -0.223 1.223 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.059 4.059 8 C -0.120 4.120 9 C 0.151 3.849 10 C -0.341 4.341 11 C 0.605 3.395 12 O -0.583 6.583 13 N -0.717 5.717 14 C 0.164 3.836 15 C -0.040 4.040 16 C -0.103 4.103 17 C 0.319 3.681 18 F -0.221 7.221 19 F -0.155 7.155 20 F -0.167 7.167 21 F -0.159 7.159 22 F -0.163 7.163 23 C -0.105 4.105 24 C -0.030 4.030 25 C -0.055 4.055 26 C 0.131 3.869 27 N -0.343 5.343 28 N -0.275 5.275 29 C 0.113 3.887 30 C -0.157 4.157 31 H 0.393 0.607 32 H 0.124 0.876 33 H 0.153 0.847 34 H 0.415 0.585 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.227 0.773 40 H 0.210 0.790 41 H 0.235 0.765 42 H 0.205 0.795 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 -1.306 0.640 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.188 4.188 3 Si 0.806 3.194 4 H -0.145 1.145 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.065 4.065 8 C -0.140 4.140 9 C 0.029 3.971 10 C -0.356 4.356 11 C 0.395 3.605 12 O -0.464 6.464 13 N -0.370 5.370 14 C 0.041 3.959 15 C -0.040 4.040 16 C -0.122 4.122 17 C 0.315 3.685 18 F -0.221 7.221 19 F -0.154 7.154 20 F -0.165 7.165 21 F -0.157 7.157 22 F -0.161 7.161 23 C -0.122 4.122 24 C -0.046 4.046 25 C -0.073 4.073 26 C -0.050 4.050 27 N -0.163 5.163 28 N -0.039 5.039 29 C -0.012 4.012 30 C -0.178 4.178 31 H 0.244 0.756 32 H 0.142 0.858 33 H 0.171 0.829 34 H 0.252 0.748 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.186 0.814 38 H 0.200 0.800 39 H 0.243 0.757 40 H 0.227 0.773 41 H 0.251 0.749 42 H 0.222 0.778 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -15.630 -0.199 0.499 15.639 hybrid contribution 2.372 -0.286 0.451 2.432 sum -13.257 -0.485 0.950 13.300 Atomic orbital electron populations 1.86597 1.16314 1.81996 1.50302 1.25103 0.85467 1.11025 0.97213 0.85215 0.78901 0.73224 0.82086 1.14545 1.20058 1.18932 1.20747 0.94635 0.94115 0.96990 1.20716 0.99838 0.95819 0.97626 1.19594 0.95973 0.94720 0.86776 1.19677 1.17284 1.04460 0.94195 1.16831 0.77296 0.79602 0.86723 1.90795 1.63112 1.72608 1.19877 1.45536 1.51995 1.28524 1.10906 1.20335 0.96951 0.88951 0.89646 1.19938 0.86522 0.97882 0.99705 1.21773 0.91858 1.00668 0.97853 1.27698 0.35707 0.97696 1.07403 2.00000 1.99547 1.33848 1.88698 1.99920 1.94440 1.44898 1.76155 1.99920 1.94529 1.54306 1.67771 1.99919 1.97201 1.19190 1.99436 1.99920 1.89773 1.29658 1.96776 1.22368 0.94426 0.94799 1.00642 1.22122 0.84995 1.02772 0.94760 1.22329 1.03776 0.89518 0.91664 1.24620 0.93339 0.95745 0.91316 1.77583 1.19650 1.07398 1.11665 1.46333 1.32350 1.19769 1.05447 1.22248 0.91051 0.84303 1.03611 1.21246 1.03871 1.03365 0.89306 0.75649 0.85845 0.82907 0.74783 0.86513 0.90113 0.81361 0.79998 0.75703 0.77321 0.74935 0.77797 0.78249 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 280. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.76 12.88 -148.98 -1.92 0.84 16 2 C -0.08 0.43 2.84 71.23 0.20 0.63 16 3 Si 0.99 -5.65 27.26 68.60 1.87 -3.78 16 4 H -0.22 2.10 7.04 99.48 0.70 2.80 16 5 H -0.28 0.30 7.11 99.48 0.71 1.00 16 6 H -0.27 0.50 7.11 99.48 0.71 1.21 16 7 C -0.06 0.21 4.53 -19.82 -0.09 0.12 16 8 C -0.12 -0.21 9.35 22.30 0.21 0.00 16 9 C 0.15 0.52 6.76 39.50 0.27 0.78 16 10 C -0.34 -0.44 6.17 -19.90 -0.12 -0.56 16 11 C 0.61 0.23 7.78 86.41 0.67 0.90 16 12 O -0.58 -4.47 15.71 -4.40 -0.07 -4.54 16 13 N -0.72 6.51 5.54 -470.91 -2.61 3.90 16 14 C 0.16 -1.96 5.80 85.64 0.50 -1.46 16 15 C -0.04 0.61 5.25 -19.87 -0.10 0.51 16 16 C -0.10 0.80 8.28 22.27 0.18 0.99 16 17 C 0.32 -0.83 4.82 22.27 0.11 -0.72 16 18 F -0.22 -5.88 16.66 44.97 0.75 -5.13 16 19 F -0.16 -2.21 15.31 44.97 0.69 -1.52 16 20 F -0.17 -2.72 15.31 44.97 0.69 -2.03 16 21 F -0.16 -2.36 15.31 44.97 0.69 -1.67 16 22 F -0.16 -2.51 15.31 44.97 0.69 -1.83 16 23 C -0.10 1.20 8.62 22.27 0.19 1.39 16 24 C -0.03 0.64 10.05 22.27 0.22 0.86 16 25 C -0.06 1.21 9.70 22.27 0.22 1.43 16 26 C 0.13 -0.33 11.44 85.42 0.98 0.65 16 27 N -0.34 -0.81 12.57 -56.62 -0.71 -1.52 16 28 N -0.28 -0.42 3.86 -187.28 -0.72 -1.14 16 29 C 0.11 -0.60 11.17 83.30 0.93 0.33 16 30 C -0.16 1.29 8.38 22.03 0.18 1.48 16 31 H 0.39 -5.48 8.08 -74.06 -0.60 -6.08 16 32 H 0.12 -0.63 7.71 -2.39 -0.02 -0.65 16 33 H 0.15 0.50 7.01 -2.91 -0.02 0.48 16 34 H 0.42 -6.03 7.38 -92.71 -0.68 -6.71 16 35 H 0.12 -1.65 8.09 -2.39 -0.02 -1.67 16 36 H 0.08 -0.69 8.09 -2.39 -0.02 -0.71 16 37 H 0.17 -0.85 7.40 -2.91 -0.02 -0.87 16 38 H 0.18 -2.01 7.40 -2.91 -0.02 -2.03 16 39 H 0.23 -6.61 8.06 -2.91 -0.02 -6.63 16 40 H 0.21 -5.94 8.06 -2.91 -0.02 -5.97 16 41 H 0.23 -2.90 7.46 -2.91 -0.02 -2.92 16 42 H 0.21 -2.37 8.06 -2.91 -0.02 -2.40 16 43 H 0.20 -3.35 7.26 -2.91 -0.02 -3.37 16 Total: 0.00 -50.10 397.96 4.49 -45.61 By element: Atomic # 1 Polarization: -35.11 SS G_CDS: 0.60 Total: -34.51 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 4.55 Total: 7.31 kcal Atomic # 7 Polarization: 5.28 SS G_CDS: -4.04 Total: 1.24 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: -1.99 Total: -3.70 kcal Atomic # 9 Polarization: -15.67 SS G_CDS: 3.50 Total: -12.17 kcal Atomic # 14 Polarization: -5.65 SS G_CDS: 1.87 Total: -3.78 kcal Total: -50.10 4.49 -45.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10974094_11618758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 477.149 kcal (2) G-P(sol) polarization free energy of solvation -50.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 427.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 431.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.70 seconds