Wall clock time and date at job start Sat Mar 6 2021 12:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21288 * 119.99593 * 2 1 4 4 C 1.50697 * 120.00369 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.46862 * 300.00562 * 4 2 1 6 6 C 1.53006 * 109.47239 * 59.99719 * 4 2 1 7 7 C 1.52997 * 109.47164 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46978 * 299.99874 * 7 6 4 9 9 H 1.08992 * 109.47056 * 300.00064 * 8 7 6 10 10 C 1.52997 * 109.46978 * 180.02562 * 8 7 6 11 11 N 1.46507 * 109.47321 * 65.00089 * 10 8 7 12 12 C 1.34772 * 120.00342 * 179.97438 * 11 10 8 13 13 O 1.21520 * 119.99673 * 0.02562 * 12 11 10 14 14 C 1.48161 * 120.00152 * 180.02562 * 12 11 10 15 15 C 1.39275 * 119.72521 * 180.02562 * 14 12 11 16 16 C 1.38623 * 119.06052 * 179.97438 * 15 14 12 17 17 C 1.38587 * 118.49217 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.32479 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.46845 * 300.00002 * 18 17 16 20 20 Si 1.86306 * 109.46880 * 180.02562 * 18 17 16 21 21 C 1.38599 * 119.35008 * 0.02562 * 17 16 15 22 22 N 1.31502 * 120.90121 * 359.74248 * 21 17 16 23 23 C 1.52996 * 109.46891 * 60.00410 * 8 7 6 24 24 C 1.52997 * 109.47466 * 180.02562 * 4 2 1 25 25 H 0.97003 * 119.99640 * 180.02562 * 1 2 3 26 26 H 0.96993 * 120.00253 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47002 * 60.00070 * 6 4 2 28 28 H 1.09000 * 109.47050 * 300.00336 * 6 4 2 29 29 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47375 * 59.99966 * 7 6 4 31 31 H 1.08994 * 109.47445 * 185.00212 * 10 8 7 32 32 H 1.09000 * 109.47459 * 305.00519 * 10 8 7 33 33 H 0.97003 * 119.99307 * 0.02562 * 11 10 8 34 34 H 1.07994 * 120.46725 * 0.02562 * 15 14 12 35 35 H 1.08002 * 120.75759 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.47148 * 59.99971 * 18 17 16 37 37 H 0.96704 * 114.00090 * 299.99527 * 19 18 17 38 38 H 1.48497 * 109.99704 * 179.97438 * 20 18 17 39 39 H 1.48498 * 109.99593 * 301.31384 * 20 18 17 40 40 H 1.08000 * 119.55165 * 179.97438 * 21 17 16 41 41 H 1.09004 * 109.47368 * 179.97438 * 23 8 7 42 42 H 1.09001 * 109.47372 * 59.99964 * 23 8 7 43 43 H 1.09002 * 109.47153 * 59.99773 * 24 4 2 44 44 H 1.09001 * 109.46832 * 299.99964 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1013 -1.3050 -0.0006 5 1 1.8379 -1.8770 0.8891 6 6 1.7317 -2.1069 -1.2502 7 6 2.4963 -3.4321 -1.2504 8 6 4.0006 -3.1529 -1.2501 9 1 4.2642 -2.5812 -2.1398 10 6 4.7652 -4.4781 -1.2510 11 7 4.5038 -5.1920 -2.5034 12 6 5.0763 -6.3913 -2.7277 13 8 5.8089 -6.8808 -1.8908 14 6 4.8123 -7.1129 -3.9945 15 6 5.4065 -8.3522 -4.2200 16 6 5.1496 -9.0155 -5.4098 17 6 4.3068 -8.4161 -6.3323 18 6 3.9996 -9.1004 -7.6394 19 8 5.2125 -9.3035 -8.3672 20 14 2.8455 -8.0353 -8.6417 21 6 3.7500 -7.1806 -6.0414 22 7 4.0071 -6.5753 -4.9027 23 6 4.3702 -2.3512 -0.0005 24 6 3.6055 -1.0254 0.0002 25 1 -0.4850 -0.8401 0.0004 26 1 -0.4850 0.8400 0.0004 27 1 1.9950 -1.5349 -2.1399 28 1 0.6601 -2.3061 -1.2503 29 1 2.2333 -4.0031 -2.1409 30 1 2.2327 -4.0039 -0.3607 31 1 5.8335 -4.2814 -1.1611 32 1 4.4362 -5.0881 -0.4097 33 1 3.9193 -4.8010 -3.1715 34 1 6.0575 -8.7905 -3.4781 35 1 5.5955 -9.9780 -5.6130 36 1 3.5279 -10.0632 -7.4434 37 1 5.6867 -8.4872 -8.5770 38 1 2.5353 -8.6987 -9.9335 39 1 1.5930 -7.7899 -7.8825 40 1 3.0931 -6.7104 -6.7581 41 1 5.4420 -2.1526 0.0000 42 1 4.1066 -2.9230 0.8892 43 1 3.8685 -0.4544 0.8906 44 1 3.8692 -0.4533 -0.8893 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11352696_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 12:58:09 Heat of formation + Delta-G solvation = -91.438842 kcal Electronic energy + Delta-G solvation = -26296.364182 eV Core-core repulsion = 22406.908892 eV Total energy + Delta-G solvation = -3889.455290 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89134 -41.15302 -40.32512 -38.90661 -37.85698 -35.95977 -34.71879 -33.86730 -33.02426 -32.22728 -31.64318 -28.37466 -26.81565 -25.00435 -24.09096 -23.69516 -23.13436 -21.78338 -21.32067 -20.62734 -19.28839 -18.58608 -18.41546 -17.78294 -17.57338 -16.81743 -16.75000 -16.48933 -16.28148 -16.23257 -15.93674 -15.53022 -15.29284 -15.09142 -14.79226 -14.77717 -14.44195 -14.34544 -14.23671 -13.75768 -13.52630 -13.42399 -13.16679 -12.89622 -12.53881 -12.19864 -12.15197 -12.05466 -11.77206 -11.51914 -11.35285 -11.06495 -11.04582 -10.81704 -10.67737 -10.63939 -10.59011 -10.33421 -10.06157 -4.99044 -0.59347 0.08123 1.25880 1.54647 1.63867 1.64740 1.97886 1.98810 2.62695 2.67335 2.95802 3.43302 3.51893 3.59660 3.63610 3.68203 3.75137 3.80378 3.96151 4.00878 4.10990 4.13649 4.23764 4.41555 4.42089 4.47432 4.48605 4.56833 4.58230 4.68344 4.73660 4.85997 4.91805 4.99320 5.01823 5.12277 5.16324 5.21795 5.27554 5.32003 5.37352 5.39807 5.53343 5.89208 6.27832 6.46784 6.61432 6.72058 7.04944 7.35294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.514 3.486 3 O -0.598 6.598 4 C -0.104 4.104 5 H 0.118 0.882 6 C -0.104 4.104 7 C -0.111 4.111 8 C -0.092 4.092 9 H 0.082 0.918 10 C 0.123 3.877 11 N -0.696 5.696 12 C 0.566 3.434 13 O -0.569 6.569 14 C 0.064 3.936 15 C -0.117 4.117 16 C -0.054 4.054 17 C -0.142 4.142 18 C -0.070 4.070 19 O -0.551 6.551 20 Si 0.774 3.226 21 C 0.102 3.898 22 N -0.458 5.458 23 C -0.107 4.107 24 C -0.098 4.098 25 H 0.417 0.583 26 H 0.404 0.596 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.419 0.581 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.119 0.881 37 H 0.397 0.603 38 H -0.297 1.297 39 H -0.275 1.275 40 H 0.188 0.812 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -1.155 -3.279 5.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.300 3.700 3 O -0.479 6.479 4 C -0.125 4.125 5 H 0.136 0.864 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.110 4.110 9 H 0.100 0.900 10 C -0.001 4.001 11 N -0.348 5.348 12 C 0.351 3.649 13 O -0.448 6.448 14 C -0.073 4.073 15 C -0.138 4.138 16 C -0.079 4.079 17 C -0.145 4.145 18 C -0.180 4.180 19 O -0.359 6.359 20 Si 0.679 3.321 21 C -0.058 4.058 22 N -0.169 5.169 23 C -0.145 4.145 24 C -0.136 4.136 25 H 0.249 0.751 26 H 0.235 0.765 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.258 0.742 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.136 0.864 37 H 0.248 0.752 38 H -0.225 1.225 39 H -0.202 1.202 40 H 0.204 0.796 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.908 -0.641 -2.761 5.668 hybrid contribution -0.095 -1.071 0.112 1.081 sum -5.003 -1.712 -2.649 5.915 Atomic orbital electron populations 1.43838 1.06539 1.13665 1.76309 1.21195 0.83423 0.91580 0.73815 1.90745 1.69472 1.35758 1.51938 1.21402 0.95705 0.92901 1.02469 0.86410 1.21509 1.01445 0.95555 0.95642 1.21602 0.93068 0.96745 1.03439 1.21364 0.95778 0.93984 0.99911 0.90001 1.21525 1.00211 0.92798 0.85525 1.45816 1.48755 1.18881 1.21327 1.18091 0.79820 0.81674 0.85268 1.90796 1.38920 1.68368 1.46746 1.21078 0.97423 0.94286 0.94524 1.22277 0.98806 0.94200 0.98476 1.21713 0.94722 1.00425 0.91070 1.21768 0.98037 0.96315 0.98368 1.25180 0.94970 1.06258 0.91627 1.86509 1.36727 1.37796 1.74912 0.93753 0.77482 0.84857 0.75995 1.23028 0.97496 0.91646 0.93648 1.67509 1.12514 1.34787 1.02103 1.21484 1.00324 0.94971 0.97683 1.21284 0.92860 0.97168 1.02257 0.75129 0.76531 0.91878 0.89253 0.90649 0.90613 0.91879 0.91322 0.74249 0.83473 0.82320 0.86366 0.75234 1.22516 1.20187 0.79613 0.91200 0.90491 0.92461 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 4.70 8.77 -173.53 -1.52 3.17 16 2 C 0.51 0.95 7.43 87.66 0.65 1.61 16 3 O -0.60 -7.69 16.82 -3.05 -0.05 -7.74 16 4 C -0.10 0.40 2.52 -11.54 -0.03 0.37 16 5 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 6 C -0.10 0.78 5.10 30.60 0.16 0.93 16 7 C -0.11 0.85 5.08 30.59 0.16 1.01 16 8 C -0.09 0.48 2.23 -10.80 -0.02 0.46 16 9 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 10 C 0.12 -0.17 5.07 86.38 0.44 0.27 16 11 N -0.70 -0.11 5.27 -465.67 -2.46 -2.56 16 12 C 0.57 3.40 7.81 86.88 0.68 4.08 16 13 O -0.57 -7.35 16.32 -3.78 -0.06 -7.41 16 14 C 0.06 0.21 6.75 41.89 0.28 0.49 16 15 C -0.12 -0.21 9.63 22.61 0.22 0.01 16 16 C -0.05 0.10 9.76 22.45 0.22 0.32 16 17 C -0.14 0.56 5.40 -19.69 -0.11 0.45 16 18 C -0.07 0.39 2.84 71.24 0.20 0.59 16 19 O -0.55 2.42 12.78 -148.98 -1.90 0.51 16 20 Si 0.77 -5.40 29.82 68.60 2.05 -3.36 16 21 C 0.10 -0.38 9.84 84.83 0.83 0.45 16 22 N -0.46 -0.10 9.54 -184.91 -1.76 -1.86 16 23 C -0.11 0.43 5.20 30.61 0.16 0.59 16 24 C -0.10 0.04 4.50 30.61 0.14 0.18 16 25 H 0.42 -5.11 8.25 -92.71 -0.76 -5.87 16 26 H 0.40 -2.32 8.93 -92.71 -0.83 -3.15 16 27 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.09 -1.00 7.57 -2.39 -0.02 -1.02 16 29 H 0.07 -0.62 7.18 -2.39 -0.02 -0.63 16 30 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.42 -1.35 6.98 -92.71 -0.65 -2.00 16 34 H 0.15 0.33 7.64 -2.91 -0.02 0.31 16 35 H 0.16 -0.73 8.06 -2.91 -0.02 -0.76 16 36 H 0.12 -0.59 7.96 -2.39 -0.02 -0.61 16 37 H 0.40 -4.83 8.70 -74.05 -0.64 -5.47 16 38 H -0.30 -0.39 7.11 99.48 0.71 0.32 16 39 H -0.28 0.83 7.11 99.48 0.71 1.54 16 40 H 0.19 -1.72 4.89 -2.91 -0.01 -1.74 16 41 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.06 0.16 8.10 -2.39 -0.02 0.14 16 44 H 0.06 0.16 8.10 -2.39 -0.02 0.14 16 Total: 0.00 -25.64 360.18 -3.52 -29.15 By element: Atomic # 1 Polarization: -19.95 SS G_CDS: -1.78 Total: -21.73 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 3.97 Total: 11.83 kcal Atomic # 7 Polarization: 4.49 SS G_CDS: -5.74 Total: -1.25 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -2.02 Total: -14.64 kcal Atomic # 14 Polarization: -5.40 SS G_CDS: 2.05 Total: -3.36 kcal Total: -25.64 -3.52 -29.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11352696_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.284 kcal (2) G-P(sol) polarization free energy of solvation -25.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds