Wall clock time and date at job start Sat Mar 6 2021 12:59:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.34782 * 1
3 3 O 1.21276 * 119.99842 * 2 1
4 4 C 1.50695 * 119.99750 * 180.02562 * 2 1 3
5 5 H 1.09004 * 109.47006 * 299.99847 * 4 2 1
6 6 C 1.52999 * 109.47387 * 59.99695 * 4 2 1
7 7 C 1.53002 * 109.47285 * 179.97438 * 6 4 2
8 8 C 1.53004 * 109.47154 * 300.00257 * 7 6 4
9 9 H 1.08992 * 109.46902 * 299.99724 * 8 7 6
10 10 C 1.53000 * 109.47043 * 179.97438 * 8 7 6
11 11 N 1.46506 * 109.46844 * 64.99876 * 10 8 7
12 12 C 1.34777 * 119.99881 * 179.97438 * 11 10 8
13 13 O 1.21280 * 119.99610 * 0.02562 * 12 11 10
14 14 C 1.50694 * 119.99733 * 180.02562 * 12 11 10
15 15 O 1.42912 * 109.46971 * 180.02562 * 14 12 11
16 16 C 1.35901 * 116.99754 * 180.02562 * 15 14 12
17 17 C 1.38708 * 120.05158 * 179.97438 * 16 15 14
18 18 C 1.50707 * 120.02924 * 359.97438 * 17 16 15
19 19 O 1.42903 * 109.46442 * 74.72569 * 18 17 16
20 20 Si 1.86293 * 109.47256 * 194.72135 * 18 17 16
21 21 C 1.38163 * 119.94393 * 179.72220 * 17 16 15
22 22 C 1.38240 * 120.05726 * 0.27920 * 21 17 16
23 23 C 1.38294 * 120.10750 * 359.97438 * 22 21 17
24 24 C 1.38115 * 120.05752 * 359.97438 * 23 22 21
25 25 C 1.52999 * 109.46808 * 60.00045 * 8 7 6
26 26 C 1.52997 * 109.47142 * 179.97438 * 4 2 1
27 27 H 0.97003 * 120.00224 * 179.97438 * 1 2 3
28 28 H 0.97007 * 119.99743 * 0.02562 * 1 2 3
29 29 H 1.08994 * 109.47332 * 299.99973 * 6 4 2
30 30 H 1.09004 * 109.46923 * 60.00102 * 6 4 2
31 31 H 1.08998 * 109.46919 * 179.97438 * 7 6 4
32 32 H 1.09004 * 109.46854 * 60.00307 * 7 6 4
33 33 H 1.08997 * 109.47353 * 305.00304 * 10 8 7
34 34 H 1.08992 * 109.47287 * 184.99995 * 10 8 7
35 35 H 0.97004 * 119.99897 * 0.02562 * 11 10 8
36 36 H 1.08992 * 109.47590 * 60.00180 * 14 12 11
37 37 H 1.08999 * 109.47314 * 299.99984 * 14 12 11
38 38 H 1.08999 * 109.47345 * 314.72639 * 18 17 16
39 39 H 0.96700 * 114.00311 * 60.00230 * 19 18 17
40 40 H 1.48501 * 109.99918 * 58.68485 * 20 18 17
41 41 H 1.48506 * 109.99973 * 180.02562 * 20 18 17
42 42 H 1.08001 * 119.97255 * 180.24634 * 21 17 16
43 43 H 1.07996 * 119.95085 * 179.97438 * 22 21 17
44 44 H 1.08007 * 119.96879 * 180.02562 * 23 22 21
45 45 H 1.08001 * 120.02756 * 180.02562 * 24 23 22
46 46 H 1.09004 * 109.47408 * 59.99822 * 25 8 7
47 47 H 1.09002 * 109.47172 * 180.02562 * 25 8 7
48 48 H 1.09005 * 109.46964 * 60.00226 * 26 4 2
49 49 H 1.08995 * 109.47189 * 300.00240 * 26 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3478 0.0000 0.0000
3 8 1.9542 1.0503 0.0000
4 6 2.1012 -1.3051 -0.0006
5 1 1.8379 -1.8770 0.8892
6 6 1.7316 -2.1069 -1.2501
7 6 2.4970 -3.4317 -1.2510
8 6 4.0012 -3.1516 -1.2512
9 1 4.2641 -2.5796 -2.1409
10 6 4.7666 -4.4764 -1.2515
11 7 4.5052 -5.1911 -2.5034
12 6 5.0784 -6.3903 -2.7270
13 8 5.8101 -6.8778 -1.8917
14 6 4.8099 -7.1251 -4.0150
15 8 5.5247 -8.3626 -4.0152
16 6 5.3908 -9.1522 -5.1132
17 6 6.0571 -10.3670 -5.1806
18 6 6.9309 -10.8125 -4.0364
19 8 6.1092 -11.2446 -2.9500
20 14 8.0142 -12.2215 -4.5944
21 6 5.9148 -11.1706 -6.2955
22 6 5.1139 -10.7623 -7.3456
23 6 4.4527 -9.5492 -7.2830
24 6 4.5909 -8.7428 -6.1703
25 6 4.3708 -2.3499 -0.0016
26 6 3.6055 -1.0256 -0.0011
27 1 -0.4850 -0.8401 -0.0004
28 1 -0.4850 0.8401 -0.0004
29 1 0.6600 -2.3061 -1.2502
30 1 1.9949 -1.5349 -2.1399
31 1 2.2333 -4.0030 -2.1410
32 1 2.2340 -4.0038 -0.3612
33 1 4.4381 -5.0860 -0.4097
34 1 5.8348 -4.2789 -1.1620
35 1 3.9202 -4.8009 -3.1716
36 1 5.1383 -6.5153 -4.8565
37 1 3.7418 -7.3230 -4.1046
38 1 7.5556 -9.9806 -3.7110
39 1 5.5257 -11.9842 -3.1682
40 1 8.8508 -11.7943 -5.7446
41 1 8.8804 -12.6705 -3.4748
42 1 6.4302 -12.1183 -6.3468
43 1 5.0042 -11.3916 -8.2164
44 1 3.8272 -9.2326 -8.1046
45 1 4.0740 -7.7957 -6.1217
46 1 4.1078 -2.9220 0.8882
47 1 5.4423 -2.1499 -0.0019
48 1 3.8691 -0.4542 0.8890
49 1 3.8685 -0.4538 -0.8910
There are 65 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 65
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_11352696_2989392.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 12:59:19
Heat of formation + Delta-G solvation = -136.650400 kcal
Electronic energy + Delta-G solvation = -30228.909020 eV
Core-core repulsion = 25928.699310 eV
Total energy + Delta-G solvation = -4300.209710 eV
No. of doubly occupied orbitals = 65
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 349.177 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.63520 -41.19618 -40.58555 -39.04102 -38.41785 -37.47002 -35.93711 -34.72902
-32.83637 -32.52948 -31.69183 -31.19778 -29.59993 -26.96716 -26.65520 -23.89597
-23.71911 -23.12271 -22.59228 -21.67713 -21.25899 -20.62006 -19.46594 -18.52066
-18.34789 -17.97949 -17.62394 -17.53038 -17.06649 -16.82676 -16.53600 -16.39094
-15.97765 -15.72201 -15.58321 -15.30504 -15.10773 -14.98931 -14.94209 -14.80611
-14.62156 -14.20725 -13.89638 -13.79273 -13.47762 -13.40298 -13.19252 -13.00503
-12.92380 -12.35367 -12.22588 -12.16277 -12.08637 -12.06634 -11.80369 -11.75234
-11.42144 -11.12582 -11.00590 -10.82181 -10.65729 -10.37425 -10.22882 -9.94261
-9.20000 -5.05382 0.26175 0.43691 1.29055 1.41751 1.50003 1.62244
1.62427 1.95759 2.59863 2.61786 2.73261 3.51754 3.56768 3.57173
3.61826 3.71996 3.77018 3.90820 3.97154 3.98904 4.04443 4.09138
4.14810 4.20265 4.33302 4.38222 4.39239 4.44575 4.45798 4.53912
4.54339 4.64663 4.66640 4.74194 4.84882 4.99596 4.99725 5.10138
5.12991 5.19047 5.24711 5.28673 5.30632 5.34857 5.40248 5.50750
5.55268 5.78779 5.87707 6.27976 6.45446 6.45645 6.82530 7.10024
7.33926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.840 5.840
2 C 0.514 3.486
3 O -0.599 6.599
4 C -0.104 4.104
5 H 0.117 0.883
6 C -0.104 4.104
7 C -0.111 4.111
8 C -0.090 4.090
9 H 0.086 0.914
10 C 0.127 3.873
11 N -0.706 5.706
12 C 0.510 3.490
13 O -0.574 6.574
14 C 0.037 3.963
15 O -0.316 6.316
16 C 0.125 3.875
17 C -0.172 4.172
18 C -0.073 4.073
19 O -0.557 6.557
20 Si 0.795 3.205
21 C -0.079 4.079
22 C -0.154 4.154
23 C -0.076 4.076
24 C -0.213 4.213
25 C -0.109 4.109
26 C -0.097 4.097
27 H 0.418 0.582
28 H 0.404 0.596
29 H 0.091 0.909
30 H 0.064 0.936
31 H 0.084 0.916
32 H 0.073 0.927
33 H 0.062 0.938
34 H 0.054 0.946
35 H 0.420 0.580
36 H 0.120 0.880
37 H 0.124 0.876
38 H 0.078 0.922
39 H 0.391 0.609
40 H -0.282 1.282
41 H -0.304 1.304
42 H 0.157 0.843
43 H 0.154 0.846
44 H 0.154 0.846
45 H 0.154 0.846
46 H 0.073 0.927
47 H 0.065 0.935
48 H 0.054 0.946
49 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.783 -2.866 -6.979 12.354
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.403 5.403
2 C 0.300 3.700
3 O -0.480 6.480
4 C -0.125 4.125
5 H 0.135 0.865
6 C -0.142 4.142
7 C -0.148 4.148
8 C -0.108 4.108
9 H 0.104 0.896
10 C 0.003 3.997
11 N -0.361 5.361
12 C 0.296 3.704
13 O -0.453 6.453
14 C -0.041 4.041
15 O -0.229 6.229
16 C 0.079 3.921
17 C -0.173 4.173
18 C -0.182 4.182
19 O -0.364 6.364
20 Si 0.700 3.300
21 C -0.096 4.096
22 C -0.172 4.172
23 C -0.094 4.094
24 C -0.232 4.232
25 C -0.147 4.147
26 C -0.135 4.135
27 H 0.249 0.751
28 H 0.235 0.765
29 H 0.109 0.891
30 H 0.083 0.917
31 H 0.103 0.897
32 H 0.092 0.908
33 H 0.080 0.920
34 H 0.072 0.928
35 H 0.258 0.742
36 H 0.138 0.862
37 H 0.142 0.858
38 H 0.096 0.904
39 H 0.240 0.760
40 H -0.209 1.209
41 H -0.233 1.233
42 H 0.174 0.826
43 H 0.172 0.828
44 H 0.171 0.829
45 H 0.171 0.829
46 H 0.092 0.908
47 H 0.084 0.916
48 H 0.073 0.927
49 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -7.518 -2.473 -6.009 9.937
hybrid contribution -0.481 1.403 0.256 1.506
sum -7.999 -1.070 -5.753 9.911
Atomic orbital electron populations
1.43837 1.06495 1.13693 1.76269 1.21196 0.83449 0.91565 0.73833
1.90745 1.69492 1.35808 1.51964 1.21404 0.95518 0.92958 1.02661
0.86549 1.21524 1.01572 0.95587 0.95497 1.21618 0.92664 0.96740
1.03798 1.21363 0.95964 0.93708 0.99814 0.89562 1.21404 0.99759
0.92759 0.85751 1.45676 1.49952 1.18887 1.21595 1.20557 0.79783
0.81903 0.88167 1.90782 1.38399 1.67973 1.48118 1.22705 0.99657
0.85086 0.96646 1.86195 1.67504 1.30617 1.38536 1.19118 0.95840
0.90760 0.86335 1.19851 1.03740 0.95076 0.98635 1.25183 0.98164
1.06505 0.88323 1.86543 1.57958 1.55914 1.36007 0.94051 0.78602
0.80997 0.76344 1.21109 0.97830 0.98793 0.91878 1.21454 0.98284
0.97748 0.99702 1.21415 0.97315 0.93452 0.97213 1.21584 1.03373
1.03486 0.94736 1.21482 1.00163 0.95143 0.97940 1.21258 0.93011
0.97054 1.02208 0.75078 0.76524 0.89059 0.91704 0.89716 0.90833
0.92001 0.92805 0.74178 0.86188 0.85805 0.90421 0.76006 1.20887
1.23255 0.82601 0.82794 0.82853 0.82873 0.90784 0.91577 0.92727
0.92497
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 5.33 8.77 -173.53 -1.52 3.80 16
2 C 0.51 0.64 7.43 87.65 0.65 1.29 16
3 O -0.60 -7.48 16.82 -3.02 -0.05 -7.53 16
4 C -0.10 0.48 2.53 -11.54 -0.03 0.45 16
5 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16
6 C -0.10 0.98 5.10 30.59 0.16 1.13 16
7 C -0.11 1.12 5.08 30.60 0.16 1.28 16
8 C -0.09 0.61 2.23 -10.79 -0.02 0.59 16
9 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16
10 C 0.13 -0.26 5.06 86.38 0.44 0.17 16
11 N -0.71 2.77 5.28 -463.07 -2.45 0.33 16
12 C 0.51 2.26 7.91 87.66 0.69 2.95 16
13 O -0.57 -9.91 16.50 16.00 0.26 -9.65 16
14 C 0.04 -0.04 5.22 71.23 0.37 0.33 16
15 O -0.32 -2.75 9.01 -73.40 -0.66 -3.41 16
16 C 0.12 0.61 6.66 22.51 0.15 0.76 16
17 C -0.17 -0.74 5.27 -19.77 -0.10 -0.84 16
18 C -0.07 -0.51 2.37 71.24 0.17 -0.34 16
19 O -0.56 -4.69 12.88 -148.98 -1.92 -6.61 16
20 Si 0.80 1.26 29.92 68.60 2.05 3.32 16
21 C -0.08 0.12 8.66 22.25 0.19 0.32 16
22 C -0.15 0.61 10.04 22.28 0.22 0.83 16
23 C -0.08 0.32 10.04 22.25 0.22 0.54 16
24 C -0.21 0.39 9.04 22.36 0.20 0.59 16
25 C -0.11 0.44 5.20 30.58 0.16 0.59 16
26 C -0.10 0.07 4.49 30.58 0.14 0.21 16
27 H 0.42 -5.50 8.25 -92.71 -0.76 -6.26 16
28 H 0.40 -2.58 8.93 -92.70 -0.83 -3.40 16
29 H 0.09 -1.21 7.56 -2.39 -0.02 -1.23 16
30 H 0.06 -0.48 8.14 -2.39 -0.02 -0.50 16
31 H 0.08 -1.10 7.18 -2.39 -0.02 -1.12 16
32 H 0.07 -0.71 8.14 -2.39 -0.02 -0.73 16
33 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16
34 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16
35 H 0.42 -4.94 7.66 -92.71 -0.71 -5.65 16
36 H 0.12 -0.89 7.65 -2.39 -0.02 -0.91 16
37 H 0.12 -0.98 7.67 -2.39 -0.02 -1.00 16
38 H 0.08 1.02 7.84 -2.39 -0.02 1.00 16
39 H 0.39 -0.66 8.70 -74.06 -0.64 -1.31 16
40 H -0.28 -1.55 7.11 99.48 0.71 -0.84 16
41 H -0.30 -2.93 7.11 99.48 0.71 -2.22 16
42 H 0.16 -1.10 5.13 -2.91 -0.01 -1.11 16
43 H 0.15 -1.40 8.06 -2.91 -0.02 -1.42 16
44 H 0.15 -1.46 8.06 -2.91 -0.02 -1.48 16
45 H 0.15 -1.23 6.30 -2.91 -0.02 -1.24 16
46 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16
47 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16
48 H 0.05 0.17 8.10 -2.38 -0.02 0.15 16
49 H 0.06 0.13 8.10 -2.39 -0.02 0.11 16
Total: 0.00 -37.66 396.02 -2.42 -40.08
By element:
Atomic # 1 Polarization: -29.29 SS G_CDS: -1.90 Total: -31.19 kcal
Atomic # 6 Polarization: 7.09 SS G_CDS: 3.76 Total: 10.85 kcal
Atomic # 7 Polarization: 8.10 SS G_CDS: -3.97 Total: 4.13 kcal
Atomic # 8 Polarization: -24.82 SS G_CDS: -2.37 Total: -27.19 kcal
Atomic # 14 Polarization: 1.26 SS G_CDS: 2.05 Total: 3.32 kcal
Total: -37.66 -2.42 -40.08 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_11352696_2989392.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.572 kcal
(2) G-P(sol) polarization free energy of solvation -37.663 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.235 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.415 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds