Wall clock time and date at job start Sat Mar 6 2021 14:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47048 * 2 1 4 4 C 1.35899 * 117.00399 * 275.32667 * 3 2 1 5 5 C 1.38739 * 120.05267 * 5.08382 * 4 3 2 6 6 C 1.38145 * 119.93988 * 179.70023 * 5 4 3 7 7 C 1.38266 * 120.06005 * 0.59445 * 6 5 4 8 8 C 1.50691 * 119.94831 * 179.69855 * 7 6 5 9 9 O 1.42900 * 109.47298 * 119.98269 * 8 7 6 10 10 Si 1.86309 * 109.46926 * 359.97438 * 8 7 6 11 11 C 1.38271 * 120.10606 * 359.68688 * 7 6 5 12 12 C 1.38137 * 120.05843 * 0.02562 * 11 7 6 13 13 C 1.50693 * 109.47240 * 120.00349 * 2 1 3 14 14 O 1.21279 * 120.00144 * 244.99749 * 13 2 1 15 15 N 1.34781 * 120.00195 * 65.00158 * 13 2 1 16 16 C 1.46494 * 120.00164 * 180.02562 * 15 13 2 17 17 H 1.08997 * 109.47594 * 34.99025 * 16 15 13 18 18 C 1.53002 * 109.47441 * 154.99826 * 16 15 13 19 19 C 1.53002 * 109.47219 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47016 * 299.99741 * 19 18 16 21 21 H 1.09001 * 109.47170 * 300.00198 * 20 19 18 22 22 O 1.42900 * 109.46684 * 179.97438 * 20 19 18 23 23 C 1.52995 * 109.47063 * 60.00268 * 20 19 18 24 24 C 1.53002 * 109.47010 * 274.99303 * 16 15 13 25 25 H 1.09007 * 109.46464 * 299.99823 * 1 2 3 26 26 H 1.09001 * 109.47204 * 59.99616 * 1 2 3 27 27 H 1.09000 * 109.47506 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46464 * 240.00177 * 2 1 3 29 29 H 1.07992 * 120.02879 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.96966 * 180.28147 * 6 5 4 31 31 H 1.08999 * 109.47510 * 239.98402 * 8 7 6 32 32 H 0.96699 * 114.00583 * 180.02562 * 9 8 7 33 33 H 1.48499 * 109.99624 * 298.67694 * 10 8 7 34 34 H 1.48494 * 110.00070 * 59.99984 * 10 8 7 35 35 H 1.07997 * 119.96636 * 179.97438 * 11 7 6 36 36 H 1.08007 * 120.03054 * 180.02562 * 12 11 7 37 37 H 0.96996 * 119.99667 * 359.97438 * 15 13 2 38 38 H 1.08999 * 109.46732 * 299.99368 * 18 16 15 39 39 H 1.09001 * 109.47099 * 59.99457 * 18 16 15 40 40 H 1.09002 * 109.46833 * 59.99626 * 19 18 16 41 41 H 1.08999 * 109.47151 * 179.97438 * 19 18 16 42 42 H 0.96696 * 114.00130 * 59.99999 * 22 20 19 43 43 H 1.09000 * 109.47144 * 179.97438 * 23 20 19 44 44 H 1.09002 * 109.47609 * 59.99611 * 23 20 19 45 45 H 1.08993 * 109.47425 * 300.00330 * 24 16 15 46 46 H 1.09004 * 109.46945 * 60.00337 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.1060 1.9665 -1.2056 5 6 1.6543 1.3304 -2.3529 6 6 1.7511 1.9645 -3.5763 7 6 2.3088 3.2270 -3.6599 8 6 2.4194 3.9136 -4.9967 9 8 1.6854 5.1393 -4.9649 10 14 1.7222 2.8063 -6.3230 11 6 2.7650 3.8606 -2.5187 12 6 2.6651 3.2332 -1.2921 13 6 2.0324 -0.7104 1.2304 14 8 2.6530 -0.0980 2.0733 15 7 1.7920 -2.0265 1.3940 16 6 2.2798 -2.7170 2.5903 17 1 2.2325 -2.0416 3.4445 18 6 1.4080 -3.9447 2.8619 19 6 1.9180 -4.6662 4.1110 20 6 3.3660 -5.1080 3.8893 21 1 3.4131 -5.7832 3.0350 22 8 3.8424 -5.7813 5.0563 23 6 4.2378 -3.8804 3.6179 24 6 3.7279 -3.1588 2.3693 25 1 -0.3632 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.2234 0.3422 -2.2889 30 1 1.3955 1.4717 -4.4691 31 1 3.4671 4.1230 -5.2121 32 1 1.7122 5.6355 -5.7944 33 1 2.4974 1.5413 -6.3877 34 1 0.2941 2.5131 -6.0411 35 1 3.2006 4.8465 -2.5866 36 1 3.0212 3.7287 -0.4009 37 1 1.2953 -2.5162 0.7200 38 1 0.3764 -3.6300 3.0194 39 1 1.4555 -4.6201 2.0077 40 1 1.8709 -3.9909 4.9653 41 1 1.2966 -5.5405 4.3047 42 1 3.3355 -6.5712 5.2891 43 1 5.2694 -4.1950 3.4604 44 1 4.1907 -3.2050 4.4722 45 1 3.7754 -3.8342 1.5152 46 1 4.3491 -2.2842 2.1759 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_10157680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:58:33 Heat of formation + Delta-G solvation = -133.586035 kcal Electronic energy + Delta-G solvation = -27160.254272 eV Core-core repulsion = 23209.367113 eV Total energy + Delta-G solvation = -3950.887159 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96606 -41.01590 -39.80897 -38.97121 -37.27171 -37.01098 -34.87353 -33.32260 -32.05876 -31.93921 -31.74890 -29.36167 -26.74892 -25.53827 -24.38892 -23.92352 -23.16834 -22.27921 -21.57786 -20.94023 -19.65447 -18.72451 -18.32089 -18.26096 -17.54231 -17.11168 -16.91961 -16.78227 -16.29800 -15.85858 -15.72772 -15.59515 -15.41108 -15.31144 -14.77523 -14.61518 -14.37077 -14.17960 -14.03806 -13.83023 -13.62607 -13.50034 -13.45823 -13.32128 -12.99869 -12.89091 -12.51104 -12.46491 -12.24111 -12.20169 -11.99859 -11.92955 -11.88039 -11.30894 -10.99844 -10.82511 -10.29972 -10.25513 -10.20578 -9.33807 -4.92191 0.09418 0.14130 1.31866 1.32259 1.38141 1.65565 1.96969 2.37080 2.48106 3.20960 3.34603 3.41962 3.50387 3.58089 3.60871 3.62591 3.70213 3.76156 3.92712 3.99546 4.06566 4.10308 4.13815 4.23897 4.26064 4.30417 4.37881 4.38723 4.49836 4.52179 4.59105 4.60900 4.78964 4.82286 4.88998 4.96151 4.98104 5.04028 5.04911 5.06085 5.06859 5.17530 5.24845 5.34402 5.36686 5.54575 6.12834 6.36336 6.86668 6.92551 7.02086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.062 3.938 3 O -0.310 6.310 4 C 0.122 3.878 5 C -0.203 4.203 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.078 4.078 9 O -0.566 6.566 10 Si 0.774 3.226 11 C -0.055 4.055 12 C -0.161 4.161 13 C 0.517 3.483 14 O -0.568 6.568 15 N -0.702 5.702 16 C 0.144 3.856 17 H 0.062 0.938 18 C -0.114 4.114 19 C -0.145 4.145 20 C 0.104 3.896 21 H 0.074 0.926 22 O -0.591 6.591 23 C -0.113 4.113 24 C -0.120 4.120 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.159 0.841 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.403 0.597 33 H -0.285 1.285 34 H -0.295 1.295 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.421 0.579 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.395 0.605 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -5.045 -7.676 9.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 O -0.223 6.223 4 C 0.077 3.923 5 C -0.221 4.221 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.187 4.187 9 O -0.376 6.376 10 Si 0.680 3.320 11 C -0.073 4.073 12 C -0.180 4.180 13 C 0.303 3.697 14 O -0.445 6.445 15 N -0.356 5.356 16 C 0.040 3.960 17 H 0.081 0.919 18 C -0.152 4.152 19 C -0.184 4.184 20 C 0.045 3.955 21 H 0.091 0.909 22 O -0.400 6.400 23 C -0.152 4.152 24 C -0.159 4.159 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.132 0.868 28 H 0.143 0.857 29 H 0.176 0.824 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.254 0.746 33 H -0.212 1.212 34 H -0.222 1.222 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.259 0.741 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.246 0.754 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.250 -5.005 -6.469 8.801 hybrid contribution -0.218 -0.391 0.608 0.755 sum -3.469 -5.397 -5.861 8.690 Atomic orbital electron populations 1.22374 0.90463 1.05914 1.04230 1.22461 0.97266 0.82069 0.97949 1.86198 1.81424 1.27122 1.27596 1.19185 0.95847 0.93122 0.84191 1.21387 1.06576 1.02639 0.91484 1.20861 0.98107 0.95054 0.97387 1.19690 1.02294 0.95126 0.95765 1.24823 1.00792 0.93168 0.99963 1.86442 1.74111 1.34519 1.42488 0.94303 0.76113 0.77560 0.84022 1.21001 0.96375 0.99614 0.90279 1.20735 1.03760 0.94086 0.99423 1.20473 0.79070 0.82895 0.87270 1.90757 1.41425 1.67136 1.45223 1.45754 1.57450 1.07814 1.24576 1.21042 0.93722 0.94081 0.87159 0.91929 1.21710 0.99226 0.95039 0.99236 1.22193 0.96347 1.01681 0.98151 1.21884 0.92561 0.93222 0.87816 0.90857 1.86498 1.60457 1.45785 1.47289 1.21412 0.99798 0.96254 0.97691 1.21791 0.95685 1.00023 0.98368 0.92081 0.89993 0.86787 0.85710 0.82375 0.85542 0.89027 0.74606 1.21233 1.22222 0.83624 0.84682 0.74101 0.89697 0.88549 0.92347 0.88915 0.75449 0.91430 0.92891 0.89371 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.69 9.12 71.98 0.66 1.34 16 2 C 0.06 0.06 2.64 29.85 0.08 0.14 16 3 O -0.31 -2.93 9.34 -73.43 -0.69 -3.61 16 4 C 0.12 0.93 6.60 22.51 0.15 1.08 16 5 C -0.20 -0.72 8.24 22.37 0.18 -0.54 16 6 C -0.10 -0.46 8.66 22.25 0.19 -0.27 16 7 C -0.13 -0.69 5.42 -19.85 -0.11 -0.79 16 8 C -0.08 0.03 2.81 71.23 0.20 0.23 16 9 O -0.57 0.00 12.74 -148.98 -1.90 -1.90 16 10 Si 0.77 -2.21 29.78 68.60 2.04 -0.16 16 11 C -0.05 -0.33 9.60 22.25 0.21 -0.12 16 12 C -0.16 -1.30 9.99 22.36 0.22 -1.08 16 13 C 0.52 2.62 7.14 87.65 0.63 3.25 16 14 O -0.57 -9.41 16.17 15.96 0.26 -9.15 16 15 N -0.70 2.22 5.04 -442.55 -2.23 -0.01 16 16 C 0.14 -0.14 2.46 44.99 0.11 -0.03 16 17 H 0.06 0.36 7.58 -2.39 -0.02 0.34 16 18 C -0.11 0.82 5.39 30.60 0.16 0.98 16 19 C -0.15 0.70 5.54 30.60 0.17 0.87 16 20 C 0.10 -0.19 3.47 30.59 0.11 -0.08 16 21 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 22 O -0.59 -0.88 13.32 -148.98 -1.98 -2.86 16 23 C -0.11 -0.25 5.57 30.58 0.17 -0.08 16 24 C -0.12 -0.05 5.49 30.58 0.17 0.12 16 25 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 26 H 0.08 -0.34 6.91 -2.39 -0.02 -0.35 16 27 H 0.11 -1.27 7.92 -2.39 -0.02 -1.29 16 28 H 0.13 -0.60 6.31 -2.38 -0.02 -0.62 16 29 H 0.16 -0.48 5.43 -2.91 -0.02 -0.50 16 30 H 0.13 0.33 4.87 -2.91 -0.01 0.32 16 31 H 0.09 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.40 -4.28 8.74 -74.06 -0.65 -4.93 16 33 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 34 H -0.29 -1.26 7.11 99.48 0.71 -0.55 16 35 H 0.15 0.44 8.06 -2.91 -0.02 0.42 16 36 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.42 -4.74 8.38 -92.71 -0.78 -5.51 16 38 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.40 -2.86 9.08 -74.06 -0.67 -3.53 16 43 H 0.07 0.22 8.14 -2.39 -0.02 0.21 16 44 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 Total: 0.00 -28.54 369.48 -2.23 -30.78 By element: Atomic # 1 Polarization: -17.07 SS G_CDS: -1.04 Total: -18.11 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 3.31 Total: 5.04 kcal Atomic # 7 Polarization: 2.22 SS G_CDS: -2.23 Total: -0.01 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -4.31 Total: -17.52 kcal Atomic # 14 Polarization: -2.21 SS G_CDS: 2.04 Total: -0.16 kcal Total: -28.54 -2.23 -30.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_10157680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.811 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds