Wall clock time and date at job start Sat Mar 6 2021 14:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35531 * 125.68075 * 2 1 4 4 C 1.35454 * 108.87345 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.06562 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.46988 * 119.98071 * 5 4 3 7 7 Si 1.86302 * 109.47460 * 359.97438 * 5 4 3 8 8 C 1.39838 * 107.86352 * 359.74511 * 4 3 2 9 9 C 1.37656 * 125.67888 * 180.02562 * 2 1 3 10 10 C 1.46685 * 126.23252 * 359.97438 * 9 2 1 11 11 O 1.21697 * 119.99898 * 5.17479 * 10 9 2 12 12 N 1.34766 * 119.99989 * 185.17157 * 10 9 2 13 13 C 1.46505 * 120.00162 * 174.41238 * 12 10 9 14 14 H 1.09000 * 109.46921 * 35.00123 * 13 12 10 15 15 C 1.52994 * 109.47235 * 155.00178 * 13 12 10 16 16 C 1.52998 * 109.47169 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47198 * 299.99903 * 16 15 13 18 18 H 1.09000 * 109.47218 * 299.99900 * 17 16 15 19 19 O 1.42902 * 109.47255 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46951 * 60.00209 * 17 16 15 21 21 C 1.52998 * 109.46809 * 299.99572 * 20 17 16 22 22 H 1.08994 * 109.47602 * 270.73389 * 1 2 3 23 23 H 1.09002 * 109.46801 * 30.74105 * 1 2 3 24 24 H 1.09007 * 109.47035 * 150.73501 * 1 2 3 25 25 H 1.08001 * 125.56042 * 359.97438 * 3 2 1 26 26 H 1.09007 * 109.47589 * 239.97997 * 5 4 3 27 27 H 0.96701 * 113.99541 * 299.99901 * 6 5 4 28 28 H 1.48504 * 110.00148 * 179.97438 * 7 5 4 29 29 H 1.48504 * 109.99713 * 301.31694 * 7 5 4 30 30 H 1.07996 * 126.45246 * 180.30697 * 8 4 3 31 31 H 0.97008 * 120.00195 * 354.41339 * 12 10 9 32 32 H 1.09000 * 109.47651 * 59.99817 * 15 13 12 33 33 H 1.08999 * 109.47318 * 300.00137 * 15 13 12 34 34 H 1.08997 * 109.47536 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.46954 * 59.99965 * 16 15 13 36 36 H 0.96701 * 114.00172 * 179.97438 * 19 17 16 37 37 H 1.09000 * 109.47412 * 59.99809 * 20 17 16 38 38 H 1.09004 * 109.46920 * 180.02562 * 20 17 16 39 39 H 1.09000 * 109.47357 * 300.00846 * 21 20 17 40 40 H 1.09002 * 109.47287 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0006 5 6 4.7536 1.6188 -0.0002 6 8 5.5400 1.3687 1.1665 7 14 4.1887 3.3941 0.0003 8 6 3.5779 -0.6889 0.0050 9 6 2.2678 -1.1182 -0.0005 10 6 1.8124 -2.5125 -0.0006 11 8 0.6257 -2.7650 -0.0953 12 7 2.7081 -3.5140 0.1041 13 6 2.2472 -4.8992 0.2273 14 1 1.3414 -5.0346 -0.3636 15 6 3.3353 -5.8460 -0.2829 16 6 2.8542 -7.2926 -0.1536 17 6 2.5567 -7.6018 1.3150 18 1 3.4627 -7.4661 1.9056 19 8 2.1068 -8.9528 1.4356 20 6 1.4685 -6.6550 1.8252 21 6 1.9497 -5.2084 1.6960 22 1 -0.3634 0.0132 1.0275 23 1 -0.3633 0.8833 -0.5253 24 1 -0.3633 -0.8966 -0.5024 25 1 1.9082 2.1235 -0.0004 26 1 5.3535 1.4288 -0.8903 27 1 5.0689 1.5179 1.9977 28 1 5.3644 4.3013 0.0013 29 1 3.3435 3.6585 -1.1918 30 1 4.4583 -1.3144 0.0107 31 1 3.6581 -3.3177 0.0979 32 1 4.2412 -5.7106 0.3080 33 1 3.5476 -5.6254 -1.3290 34 1 3.6292 -7.9672 -0.5175 35 1 1.9482 -7.4284 -0.7443 36 1 1.8994 -9.2189 2.3419 37 1 0.5625 -6.7907 1.2345 38 1 1.2568 -6.8750 2.8716 39 1 2.8557 -5.0727 2.2865 40 1 1.1743 -4.5337 2.0590 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_10803934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:58:39 Heat of formation + Delta-G solvation = -77.684582 kcal Electronic energy + Delta-G solvation = -22388.067809 eV Core-core repulsion = 18976.624759 eV Total energy + Delta-G solvation = -3411.443049 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57118 -40.85571 -39.42363 -37.67586 -37.00082 -34.78667 -33.73471 -31.90961 -31.25284 -29.15246 -28.22110 -25.72721 -24.31387 -23.88834 -22.59977 -21.36618 -21.04505 -20.34305 -18.86179 -18.22031 -17.71528 -17.34780 -16.84302 -16.72512 -16.12872 -15.82537 -15.62541 -15.52473 -15.26003 -15.00876 -14.69598 -14.45019 -14.22402 -14.08971 -13.50324 -13.37776 -13.29857 -13.23785 -13.15766 -12.99355 -12.47177 -12.26171 -12.20773 -11.92595 -11.78543 -11.31464 -11.16043 -10.79663 -10.32424 -10.21640 -9.69357 -9.26709 -4.93627 0.38389 1.40449 1.53205 1.57457 1.72962 2.05026 2.25920 2.28639 3.25716 3.53984 3.65325 3.68338 3.72502 3.83103 3.99289 4.03067 4.09155 4.18642 4.23594 4.27254 4.35746 4.37387 4.40210 4.40737 4.61753 4.67382 4.71531 4.77407 4.85216 4.92618 4.98980 5.06501 5.09226 5.17684 5.21909 5.29141 5.42047 5.66275 5.87776 6.15676 6.43714 6.86211 6.90925 7.08958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.412 5.412 3 C 0.034 3.966 4 C -0.219 4.219 5 C -0.036 4.036 6 O -0.559 6.559 7 Si 0.777 3.223 8 C -0.111 4.111 9 C -0.080 4.080 10 C 0.587 3.413 11 O -0.584 6.584 12 N -0.703 5.703 13 C 0.147 3.853 14 H 0.067 0.933 15 C -0.114 4.114 16 C -0.112 4.112 17 C 0.103 3.897 18 H 0.072 0.928 19 O -0.589 6.589 20 C -0.144 4.144 21 C -0.120 4.120 22 H 0.086 0.914 23 H 0.111 0.889 24 H 0.084 0.916 25 H 0.200 0.800 26 H 0.101 0.899 27 H 0.393 0.607 28 H -0.304 1.304 29 H -0.283 1.283 30 H 0.157 0.843 31 H 0.415 0.585 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.394 0.606 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 2.047 3.658 4.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.084 5.084 3 C -0.103 4.103 4 C -0.225 4.225 5 C -0.147 4.147 6 O -0.367 6.367 7 Si 0.684 3.316 8 C -0.137 4.137 9 C -0.192 4.192 10 C 0.377 3.623 11 O -0.466 6.466 12 N -0.354 5.354 13 C 0.043 3.957 14 H 0.085 0.915 15 C -0.152 4.152 16 C -0.150 4.150 17 C 0.045 3.955 18 H 0.090 0.910 19 O -0.398 6.398 20 C -0.182 4.182 21 C -0.159 4.159 22 H 0.105 0.895 23 H 0.129 0.871 24 H 0.102 0.898 25 H 0.217 0.783 26 H 0.119 0.881 27 H 0.243 0.757 28 H -0.232 1.232 29 H -0.210 1.210 30 H 0.175 0.825 31 H 0.253 0.747 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.244 0.756 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.061 2.432 2.106 3.218 hybrid contribution 0.244 -0.442 0.117 0.518 sum 0.304 1.990 2.223 2.999 Atomic orbital electron populations 1.22444 0.74932 1.05841 1.04822 1.44027 1.07607 1.04830 1.51974 1.22328 0.89811 0.92484 1.05713 1.19902 0.94169 0.94774 1.13673 1.24446 0.91593 1.08112 0.90512 1.86441 1.41509 1.92329 1.16406 0.93969 0.79644 0.72226 0.85781 1.21407 0.94224 0.95219 1.02860 1.20066 0.90988 0.87523 1.20650 1.17213 0.85344 0.84341 0.75424 1.90772 1.17835 1.85337 1.52661 1.45612 1.10207 1.05750 1.73849 1.21026 0.98357 0.79639 0.96713 0.91470 1.21698 0.97983 0.92549 1.02964 1.21420 1.02147 0.96086 0.95318 1.21901 0.95757 0.80911 0.96971 0.91049 1.86483 1.89015 1.29061 1.35202 1.22181 0.99180 0.94523 1.02351 1.21796 1.01981 0.96073 0.96018 0.89536 0.87099 0.89761 0.78343 0.88140 0.75731 1.23245 1.20977 0.82513 0.74730 0.88908 0.89941 0.90267 0.92261 0.75600 0.92446 0.90129 0.89871 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.07 10.66 127.77 1.36 1.29 16 2 N -0.41 -0.75 3.16 -534.31 -1.69 -2.44 16 3 C 0.03 -0.06 9.94 83.48 0.83 0.77 16 4 C -0.22 0.07 5.44 -20.12 -0.11 -0.04 16 5 C -0.04 0.05 3.02 71.23 0.22 0.26 16 6 O -0.56 0.29 12.88 -148.98 -1.92 -1.63 16 7 Si 0.78 -2.82 30.59 68.60 2.10 -0.72 16 8 C -0.11 -0.12 10.29 22.57 0.23 0.11 16 9 C -0.08 -0.32 6.89 40.35 0.28 -0.04 16 10 C 0.59 3.65 7.74 86.45 0.67 4.32 16 11 O -0.58 -7.49 14.26 -4.34 -0.06 -7.55 16 12 N -0.70 -0.05 5.06 -446.49 -2.26 -2.31 16 13 C 0.15 0.03 2.50 44.99 0.11 0.14 16 14 H 0.07 0.39 7.50 -2.39 -0.02 0.37 16 15 C -0.11 0.45 5.39 30.59 0.16 0.62 16 16 C -0.11 0.11 5.57 30.59 0.17 0.28 16 17 C 0.10 -0.14 3.47 30.60 0.11 -0.03 16 18 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 19 O -0.59 -0.89 13.32 -148.98 -1.98 -2.88 16 20 C -0.14 0.16 5.54 30.60 0.17 0.32 16 21 C -0.12 0.06 5.49 30.60 0.17 0.23 16 22 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 23 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 24 H 0.08 0.34 6.18 -2.38 -0.01 0.33 16 25 H 0.20 -1.65 6.19 -2.91 -0.02 -1.67 16 26 H 0.10 0.03 7.96 -2.38 -0.02 0.01 16 27 H 0.39 -3.25 8.70 -74.06 -0.64 -3.89 16 28 H -0.30 -1.40 7.11 99.48 0.71 -0.70 16 29 H -0.28 -0.18 7.11 99.48 0.71 0.52 16 30 H 0.16 -0.39 7.45 -2.91 -0.02 -0.41 16 31 H 0.42 -2.11 7.50 -92.70 -0.70 -2.80 16 32 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.39 -2.49 9.08 -74.06 -0.67 -3.17 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.13 16 38 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 39 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -21.04 325.55 -2.35 -23.40 By element: Atomic # 1 Polarization: -13.20 SS G_CDS: -0.90 Total: -14.11 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 4.37 Total: 8.23 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -3.95 Total: -4.74 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -3.97 Total: -12.06 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.10 Total: -0.72 kcal Total: -21.04 -2.35 -23.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_10803934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.289 kcal (2) G-P(sol) polarization free energy of solvation -21.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds