Wall clock time and date at job start Sat Mar 6 2021 14:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86307 * 109.47028 * 2 1 4 4 C 1.50698 * 109.46966 * 119.99522 * 2 1 3 5 5 C 1.36454 * 120.29605 * 119.98515 * 4 2 1 6 6 C 1.40089 * 119.25452 * 180.02562 * 5 4 2 7 7 C 1.40854 * 132.86532 * 179.97438 * 6 5 4 8 8 C 1.46571 * 126.57604 * 0.02562 * 7 6 5 9 9 O 1.21720 * 120.00276 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99760 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99814 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47110 * 35.00326 * 11 10 8 13 13 C 1.53006 * 109.46952 * 155.00068 * 11 10 8 14 14 C 1.52993 * 109.46944 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47521 * 300.00136 * 14 13 11 16 16 H 1.08994 * 109.47039 * 300.00170 * 15 14 13 17 17 O 1.42902 * 109.47439 * 180.02562 * 15 14 13 18 18 C 1.53006 * 109.47122 * 59.99973 * 15 14 13 19 19 C 1.52995 * 109.47170 * 275.00084 * 11 10 8 20 20 C 1.40554 * 106.84206 * 180.02562 * 7 6 5 21 21 N 1.30742 * 108.74345 * 0.24591 * 20 7 6 22 22 N 1.36583 * 120.23462 * 0.02562 * 6 5 4 23 23 C 1.36248 * 120.07620 * 359.97438 * 22 6 5 24 24 C 1.35193 * 120.70487 * 0.02562 * 23 22 6 25 25 H 0.96703 * 114.00378 * 300.00228 * 1 2 3 26 26 H 1.08991 * 109.47844 * 239.99882 * 2 1 3 27 27 H 1.48500 * 109.99847 * 178.67860 * 3 2 1 28 28 H 1.48504 * 109.99815 * 299.99307 * 3 2 1 29 29 H 1.07994 * 120.36778 * 0.06311 * 5 4 2 30 30 H 0.97005 * 120.00034 * 0.02562 * 10 8 7 31 31 H 1.08999 * 109.47204 * 300.00017 * 13 11 10 32 32 H 1.08999 * 109.46683 * 60.00517 * 13 11 10 33 33 H 1.08999 * 109.47534 * 60.00178 * 14 13 11 34 34 H 1.09003 * 109.47105 * 180.02562 * 14 13 11 35 35 H 0.96696 * 114.00181 * 179.97438 * 17 15 14 36 36 H 1.08994 * 109.47003 * 60.00175 * 18 15 14 37 37 H 1.08999 * 109.47204 * 180.02562 * 18 15 14 38 38 H 1.08999 * 109.47727 * 300.00255 * 19 11 10 39 39 H 1.09006 * 109.47515 * 60.00474 * 19 11 10 40 40 H 1.08002 * 125.62408 * 179.97438 * 20 7 6 41 41 H 1.07992 * 119.64618 * 179.97438 * 23 22 6 42 42 H 1.08000 * 119.83253 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.7159 -1.8205 1.1124 6 6 3.1703 -2.4640 2.2708 7 6 3.9735 -3.6015 2.4826 8 6 4.5741 -4.4511 1.4502 9 8 4.3951 -4.1975 0.2733 10 7 5.3247 -5.5131 1.8042 11 6 5.9245 -6.3626 0.7724 12 1 6.2124 -5.7491 -0.0812 13 6 7.1628 -7.0585 1.3411 14 6 7.7889 -7.9461 0.2637 15 6 6.7728 -8.9988 -0.1839 16 1 6.4849 -9.6120 0.6700 17 8 7.3578 -9.8282 -1.1898 18 6 5.5345 -8.3029 -0.7526 19 6 4.9086 -7.4152 0.3243 20 6 4.0886 -3.7655 3.8738 21 7 3.4116 -2.8167 4.4661 22 7 2.8296 -1.9834 3.5031 23 6 2.0457 -0.8743 3.6107 24 6 1.5958 -0.2372 2.5065 25 1 -0.3934 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 3.5346 1.7703 0.0322 28 1 1.5615 2.4679 -1.2086 29 1 2.9840 -2.1983 0.1369 30 1 5.4670 -5.7154 2.7422 31 1 7.8866 -6.3086 1.6603 32 1 6.8748 -7.6721 2.1946 33 1 8.0768 -7.3330 -0.5903 34 1 8.6708 -8.4422 0.6689 35 1 6.7688 -10.5201 -1.5206 36 1 5.8223 -7.6897 -1.6065 37 1 4.8104 -9.0528 -1.0710 38 1 4.6206 -8.0289 1.1779 39 1 4.0264 -6.9195 -0.0809 40 1 4.6411 -4.5489 4.3713 41 1 1.7803 -0.5006 4.5885 42 1 0.9756 0.6411 2.6081 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:58:46 Heat of formation + Delta-G solvation = -25.562575 kcal Electronic energy + Delta-G solvation = -26371.910387 eV Core-core repulsion = 22512.623185 eV Total energy + Delta-G solvation = -3859.287202 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.32223 -40.98094 -39.58654 -39.21929 -37.21866 -36.97434 -34.54350 -34.13355 -32.10457 -31.89985 -30.73363 -29.09827 -27.21312 -25.07178 -24.11715 -23.86155 -23.16284 -22.59877 -21.43713 -20.86232 -19.11109 -18.52907 -18.22410 -17.90766 -17.64332 -17.09627 -17.01895 -16.53720 -16.23871 -15.86666 -15.67840 -15.51010 -15.40605 -15.03179 -14.71049 -14.51857 -14.27508 -14.16682 -14.01746 -13.51234 -13.36258 -13.27317 -13.16441 -12.99008 -12.49562 -12.39005 -12.23839 -12.20154 -12.00797 -11.76608 -11.58366 -11.30438 -11.02356 -10.80252 -10.78262 -10.27484 -10.12945 -8.82006 -5.08737 -0.58693 -0.12068 0.99112 1.03933 1.18993 1.66715 1.94956 2.06492 2.16373 2.45775 3.06157 3.21218 3.28481 3.45196 3.57262 3.59431 3.69788 3.73582 3.86396 3.94006 4.01867 4.08585 4.17270 4.19767 4.28296 4.33105 4.37252 4.41244 4.43910 4.60573 4.64681 4.76381 4.87105 4.96039 4.99556 5.07255 5.08868 5.09981 5.15218 5.22717 5.27333 5.32031 5.50571 5.66442 6.27459 6.58000 6.75877 6.85077 7.26552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.077 4.077 3 Si 0.817 3.183 4 C -0.053 4.053 5 C -0.136 4.136 6 C 0.150 3.850 7 C -0.348 4.348 8 C 0.597 3.403 9 O -0.596 6.596 10 N -0.710 5.710 11 C 0.148 3.852 12 H 0.061 0.939 13 C -0.112 4.112 14 C -0.112 4.112 15 C 0.104 3.896 16 H 0.073 0.927 17 O -0.589 6.589 18 C -0.145 4.145 19 C -0.121 4.121 20 C 0.132 3.868 21 N -0.337 5.337 22 N -0.273 5.273 23 C 0.115 3.885 24 C -0.146 4.146 25 H 0.401 0.599 26 H 0.104 0.896 27 H -0.303 1.303 28 H -0.289 1.289 29 H 0.135 0.865 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.235 0.765 41 H 0.215 0.785 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 2.452 7.247 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.185 4.185 3 Si 0.721 3.279 4 C -0.059 4.059 5 C -0.156 4.156 6 C 0.029 3.971 7 C -0.363 4.363 8 C 0.387 3.613 9 O -0.478 6.478 10 N -0.361 5.361 11 C 0.043 3.957 12 H 0.079 0.921 13 C -0.150 4.150 14 C -0.150 4.150 15 C 0.046 3.954 16 H 0.091 0.909 17 O -0.398 6.398 18 C -0.183 4.183 19 C -0.160 4.160 20 C -0.049 4.049 21 N -0.157 5.157 22 N -0.037 5.037 23 C -0.010 4.010 24 C -0.166 4.166 25 H 0.252 0.748 26 H 0.122 0.878 27 H -0.231 1.231 28 H -0.216 1.216 29 H 0.153 0.847 30 H 0.251 0.749 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.251 0.749 41 H 0.231 0.769 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.167 3.677 6.827 8.052 hybrid contribution 0.094 -1.632 -1.247 2.056 sum -2.073 2.045 5.580 6.294 Atomic orbital electron populations 1.86585 1.15884 1.82289 1.50761 1.25335 0.86016 1.11263 0.95914 0.93870 0.76851 0.72155 0.85017 1.20779 0.94071 0.93481 0.97600 1.20630 1.01133 0.96663 0.97184 1.19469 0.96055 0.94622 0.86961 1.19716 1.17675 1.04475 0.94387 1.17098 0.77408 0.79891 0.86874 1.90754 1.63145 1.73495 1.20441 1.45602 1.51837 1.27785 1.10881 1.20953 0.93124 0.90809 0.90814 0.92109 1.21696 0.95529 0.99088 0.98698 1.21430 0.98459 0.96410 0.98711 1.21899 0.92020 0.91362 0.90156 0.90904 1.86480 1.45564 1.48907 1.58811 1.22177 0.98061 0.99595 0.98486 1.21785 0.97893 0.96963 0.99322 1.24589 0.93406 0.95889 0.90970 1.77551 1.19646 1.07177 1.11371 1.46388 1.32573 1.19712 1.05021 1.22494 0.90542 0.83858 1.04114 1.21361 1.03481 1.03611 0.88153 0.74756 0.87850 1.23136 1.21648 0.84681 0.74852 0.89770 0.88630 0.92486 0.90100 0.75641 0.92727 0.90334 0.89796 0.93593 0.74906 0.76853 0.76067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.72 12.87 -148.98 -1.92 -0.19 16 2 C -0.08 0.17 2.84 71.24 0.20 0.38 16 3 Si 0.82 -4.01 31.96 68.60 2.19 -1.82 16 4 C -0.05 0.06 4.53 -19.82 -0.09 -0.03 16 5 C -0.14 -0.94 9.35 22.30 0.21 -0.73 16 6 C 0.15 1.20 6.76 39.49 0.27 1.47 16 7 C -0.35 -2.55 6.17 -19.90 -0.12 -2.67 16 8 C 0.60 5.64 7.75 86.42 0.67 6.31 16 9 O -0.60 -10.61 15.37 -4.41 -0.07 -10.68 16 10 N -0.71 -0.97 5.07 -446.59 -2.26 -3.23 16 11 C 0.15 0.30 2.46 44.99 0.11 0.41 16 12 H 0.06 0.51 7.57 -2.39 -0.02 0.49 16 13 C -0.11 0.38 5.39 30.59 0.16 0.55 16 14 C -0.11 0.01 5.57 30.59 0.17 0.18 16 15 C 0.10 -0.02 3.47 30.60 0.11 0.09 16 16 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 17 O -0.59 -1.54 13.32 -148.98 -1.98 -3.53 16 18 C -0.14 -0.14 5.55 30.58 0.17 0.03 16 19 C -0.12 -0.23 5.49 30.58 0.17 -0.06 16 20 C 0.13 0.21 11.44 85.42 0.98 1.19 16 21 N -0.34 -1.59 12.57 -56.62 -0.71 -2.30 16 22 N -0.27 -1.02 3.86 -187.27 -0.72 -1.74 16 23 C 0.12 -0.61 11.18 83.30 0.93 0.32 16 24 C -0.15 1.29 8.38 22.03 0.18 1.47 16 25 H 0.40 -5.78 8.08 -74.06 -0.60 -6.38 16 26 H 0.10 0.15 7.70 -2.39 -0.02 0.14 16 27 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 28 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 29 H 0.14 1.50 7.01 -2.91 -0.02 1.47 16 30 H 0.41 -2.47 7.52 -92.70 -0.70 -3.17 16 31 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.39 -2.04 9.08 -74.06 -0.67 -2.71 16 36 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 40 H 0.23 -1.95 7.46 -2.91 -0.02 -1.98 16 41 H 0.21 -2.77 8.06 -2.91 -0.02 -2.80 16 42 H 0.22 -4.60 7.31 -2.91 -0.02 -4.62 16 Total: 0.00 -33.15 348.63 -2.21 -35.36 By element: Atomic # 1 Polarization: -19.91 SS G_CDS: -0.85 Total: -20.77 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 4.12 Total: 8.89 kcal Atomic # 7 Polarization: -3.57 SS G_CDS: -3.70 Total: -7.27 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -3.97 Total: -14.40 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.19 Total: -1.82 kcal Total: -33.15 -2.21 -35.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.799 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds