Wall clock time and date at job start Sat Mar 6 2021 14:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35448 * 125.55854 * 2 1 4 4 C 1.50701 * 126.07359 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.46791 * 332.00419 * 4 3 2 6 6 Si 1.86298 * 109.47328 * 212.00703 * 4 3 2 7 7 C 1.39840 * 107.86137 * 180.02562 * 3 2 1 8 8 C 1.50708 * 126.45591 * 180.02562 * 7 3 2 9 9 C 1.37870 * 107.08476 * 0.02562 * 7 3 2 10 10 C 1.46676 * 126.23077 * 179.97438 * 9 7 3 11 11 O 1.21694 * 120.00235 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00139 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00327 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46811 * 35.00780 * 13 12 10 15 15 C 1.52997 * 109.47025 * 155.00641 * 13 12 10 16 16 C 1.52998 * 109.47041 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.46935 * 299.99505 * 16 15 13 18 18 H 1.08994 * 109.47616 * 300.00131 * 17 16 15 19 19 O 1.42897 * 109.47021 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.46852 * 60.00379 * 17 16 15 21 21 C 1.52998 * 109.47041 * 299.99556 * 20 17 16 22 22 N 1.35526 * 125.56578 * 180.31468 * 2 1 3 23 23 H 1.09001 * 109.47554 * 84.54889 * 1 2 3 24 24 H 1.09002 * 109.46907 * 204.54868 * 1 2 3 25 25 H 1.09000 * 109.47268 * 324.54135 * 1 2 3 26 26 H 1.08999 * 109.46932 * 92.00154 * 4 3 2 27 27 H 0.96702 * 114.00205 * 299.99888 * 5 4 3 28 28 H 1.48499 * 110.00096 * 58.67849 * 6 4 3 29 29 H 1.48501 * 109.99986 * 179.97438 * 6 4 3 30 30 H 1.09002 * 109.46726 * 269.98466 * 8 7 3 31 31 H 1.09001 * 109.47203 * 29.98202 * 8 7 3 32 32 H 1.08993 * 109.46785 * 149.98591 * 8 7 3 33 33 H 0.97007 * 119.99647 * 0.02562 * 12 10 9 34 34 H 1.08999 * 109.47798 * 59.99988 * 15 13 12 35 35 H 1.08998 * 109.47338 * 299.99947 * 15 13 12 36 36 H 1.09000 * 109.47093 * 179.97438 * 16 15 13 37 37 H 1.08995 * 109.47731 * 59.99602 * 16 15 13 38 38 H 0.96705 * 114.00087 * 180.02562 * 19 17 16 39 39 H 1.09002 * 109.47504 * 59.99479 * 20 17 16 40 40 H 1.08998 * 109.47338 * 179.97438 * 20 17 16 41 41 H 1.08995 * 109.47731 * 300.00398 * 21 20 17 42 42 H 1.09000 * 109.47093 * 180.02562 * 21 20 17 43 43 H 0.97006 * 125.68250 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1019 0.0000 4 6 1.8198 2.5321 0.0005 5 8 0.5404 2.6094 -0.6314 6 14 3.0373 3.5911 -0.9306 7 6 3.6269 0.6768 -0.0006 8 6 4.8485 1.5594 -0.0003 9 6 3.6122 -0.7018 -0.0015 10 6 4.7860 -1.5813 -0.0029 11 8 5.9049 -1.1028 -0.0029 12 7 4.6254 -2.9195 -0.0032 13 6 5.7978 -3.7980 -0.0041 14 1 6.5935 -3.3424 0.5852 15 6 5.4222 -5.1502 0.6052 16 6 6.6468 -6.0674 0.6049 17 6 7.1302 -6.2723 -0.8322 18 1 6.3347 -6.7280 -1.4217 19 8 8.2735 -7.1294 -0.8325 20 6 7.5058 -4.9200 -1.4415 21 6 6.2812 -4.0028 -1.4412 22 7 2.2953 -1.1024 -0.0061 23 1 -0.3634 0.0976 -1.0230 24 1 -0.3633 -0.9348 0.4270 25 1 -0.3634 0.8371 0.5962 26 1 1.7398 2.8880 1.0277 27 1 0.5367 2.3079 -1.5502 28 1 3.1793 3.0966 -2.3236 29 1 2.5800 5.0040 -0.9378 30 1 5.1429 1.7726 -1.0279 31 1 4.6219 2.4934 0.5140 32 1 5.6642 1.0505 0.5132 33 1 3.7335 -3.3009 -0.0029 34 1 4.6264 -5.6059 0.0160 35 1 5.0782 -5.0044 1.6292 36 1 6.3793 -7.0307 1.0394 37 1 7.4423 -5.6117 1.1944 38 1 8.6346 -7.3032 -1.7127 39 1 8.3013 -4.4642 -0.8520 40 1 7.8506 -5.0659 -2.4651 41 1 5.4857 -4.4585 -2.0306 42 1 6.5487 -3.0396 -1.8757 43 1 1.9834 -2.0210 -0.0107 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12297754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:58:50 Heat of formation + Delta-G solvation = -92.977523 kcal Electronic energy + Delta-G solvation = -24493.821440 eV Core-core repulsion = 20926.177620 eV Total energy + Delta-G solvation = -3567.643820 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.67985 -40.87956 -39.44464 -37.83399 -37.03768 -34.76849 -33.95866 -32.51913 -31.91075 -29.67741 -29.24796 -27.43301 -26.19119 -23.91852 -23.43470 -22.10624 -21.28408 -20.80717 -20.16741 -19.28771 -18.22692 -17.80006 -17.43451 -16.71804 -16.67198 -15.98473 -15.89287 -15.52654 -15.34178 -15.09270 -15.01408 -14.65098 -14.39092 -14.23472 -14.11479 -13.84885 -13.51737 -13.37826 -13.29152 -13.23654 -13.14197 -13.01341 -12.60184 -12.47127 -12.32046 -12.21567 -11.91091 -11.78654 -11.32231 -11.08517 -10.80086 -10.70673 -10.22465 -9.52277 -8.98132 -4.75232 0.36611 1.22293 1.63646 1.68234 1.92686 2.00187 2.12122 2.27949 3.25186 3.42030 3.54756 3.67810 3.79565 3.90922 3.98422 3.98993 4.08332 4.17731 4.21082 4.26658 4.35918 4.39608 4.44759 4.59186 4.60953 4.70196 4.79939 4.84380 4.84674 4.89387 4.93543 4.98283 5.06336 5.08802 5.14476 5.15942 5.21340 5.27319 5.36245 5.42559 5.72418 5.85361 6.37018 6.52988 6.58515 6.84896 7.10156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.229 4.229 4 C -0.028 4.028 5 O -0.541 6.541 6 Si 0.720 3.280 7 C -0.077 4.077 8 C -0.102 4.102 9 C -0.075 4.075 10 C 0.589 3.411 11 O -0.560 6.560 12 N -0.715 5.715 13 C 0.147 3.853 14 H 0.069 0.931 15 C -0.113 4.113 16 C -0.112 4.112 17 C 0.103 3.897 18 H 0.070 0.930 19 O -0.589 6.589 20 C -0.145 4.145 21 C -0.121 4.121 22 N -0.523 5.523 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.382 0.618 28 H -0.298 1.298 29 H -0.296 1.296 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.408 0.592 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.394 0.606 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -4.668 -0.490 6.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C -0.235 4.235 4 C -0.140 4.140 5 O -0.348 6.348 6 Si 0.628 3.372 7 C -0.086 4.086 8 C -0.158 4.158 9 C -0.187 4.187 10 C 0.378 3.622 11 O -0.439 6.439 12 N -0.366 5.366 13 C 0.042 3.958 14 H 0.087 0.913 15 C -0.151 4.151 16 C -0.150 4.150 17 C 0.045 3.955 18 H 0.088 0.912 19 O -0.398 6.398 20 C -0.183 4.183 21 C -0.160 4.160 22 N -0.122 5.122 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.138 0.862 27 H 0.231 0.769 28 H -0.225 1.225 29 H -0.224 1.224 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -3.326 -3.780 0.055 5.035 hybrid contribution -1.018 -0.906 -1.454 1.993 sum -4.343 -4.686 -1.399 6.541 Atomic orbital electron populations 1.20547 0.85387 1.04210 1.04217 1.20640 0.94654 0.85085 1.02646 1.19607 0.92418 0.95613 1.15852 1.24110 0.90822 0.95770 1.03249 1.86531 1.29241 1.88218 1.30855 0.94092 0.87560 0.75168 0.80419 1.19944 0.95123 0.91804 1.01750 1.20389 0.94406 0.97891 1.03116 1.19952 0.83510 0.93836 1.21435 1.17159 0.87205 0.82055 0.75749 1.90816 1.25502 1.75702 1.51836 1.45797 1.10509 1.04906 1.75436 1.21005 0.87719 0.90320 0.96708 0.91271 1.21692 0.98277 0.92564 1.02533 1.21425 0.97551 1.00407 0.95631 1.21901 0.87742 0.88853 0.97039 0.91212 1.86484 1.47656 1.69425 1.36196 1.22180 0.98019 0.96096 1.02018 1.21793 0.98188 0.99463 0.96540 1.41783 1.04376 1.09129 1.56886 0.89502 0.90188 0.89354 0.86169 0.76923 1.22520 1.22388 0.90717 0.88177 0.89906 0.75551 0.89034 0.89784 0.90298 0.92172 0.75628 0.92342 0.90363 0.90164 0.93030 0.72971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.53 9.01 71.24 0.64 1.17 16 2 C 0.09 -0.15 7.08 41.34 0.29 0.14 16 3 C -0.23 -0.37 5.34 -20.12 -0.11 -0.48 16 4 C -0.03 -0.02 2.98 71.24 0.21 0.19 16 5 O -0.54 -0.50 10.43 -148.98 -1.55 -2.06 16 6 Si 0.72 1.74 27.21 68.60 1.87 3.61 16 7 C -0.08 -0.30 5.88 -19.56 -0.11 -0.41 16 8 C -0.10 -0.24 7.67 71.24 0.55 0.31 16 9 C -0.08 -0.19 7.06 40.35 0.28 0.09 16 10 C 0.59 2.61 7.75 86.45 0.67 3.28 16 11 O -0.56 -6.61 14.46 -4.33 -0.06 -6.67 16 12 N -0.72 1.87 5.07 -446.51 -2.27 -0.40 16 13 C 0.15 -0.22 2.45 44.99 0.11 -0.11 16 14 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 15 C -0.11 0.67 5.39 30.59 0.16 0.83 16 16 C -0.11 0.25 5.57 30.60 0.17 0.42 16 17 C 0.10 -0.22 3.47 30.59 0.11 -0.12 16 18 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 19 O -0.59 -0.57 13.32 -148.98 -1.98 -2.56 16 20 C -0.14 0.23 5.55 30.59 0.17 0.40 16 21 C -0.12 0.16 5.50 30.60 0.17 0.32 16 22 N -0.52 1.94 5.99 -171.94 -1.03 0.91 16 23 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H 0.09 -0.32 7.18 -2.39 -0.02 -0.34 16 26 H 0.12 -0.07 7.96 -2.39 -0.02 -0.09 16 27 H 0.38 -1.41 8.69 -74.06 -0.64 -2.05 16 28 H -0.30 -2.51 7.11 99.48 0.71 -1.80 16 29 H -0.30 -2.62 7.11 99.48 0.71 -1.91 16 30 H 0.07 0.17 7.29 -2.39 -0.02 0.15 16 31 H 0.10 -0.29 5.52 -2.39 -0.01 -0.30 16 32 H 0.08 0.46 6.49 -2.39 -0.02 0.45 16 33 H 0.41 -3.76 7.73 -92.70 -0.72 -4.48 16 34 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.39 -2.63 9.08 -74.05 -0.67 -3.30 16 39 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.43 -4.59 8.19 -92.70 -0.76 -5.35 16 Total: 0.00 -20.30 336.67 -3.41 -23.71 By element: Atomic # 1 Polarization: -20.88 SS G_CDS: -1.69 Total: -22.58 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 3.31 Total: 6.03 kcal Atomic # 7 Polarization: 3.81 SS G_CDS: -3.30 Total: 0.51 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -3.60 Total: -11.28 kcal Atomic # 14 Polarization: 1.74 SS G_CDS: 1.87 Total: 3.61 kcal Total: -20.30 -3.41 -23.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12297754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.269 kcal (2) G-P(sol) polarization free energy of solvation -20.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds