Wall clock time and date at job start Sat Mar 6 2021 14:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86296 * 109.46988 * 2 1 4 4 C 1.50697 * 109.47115 * 239.99681 * 2 1 3 5 5 C 1.38234 * 120.00422 * 300.00131 * 4 2 1 6 6 C 1.38230 * 120.00620 * 179.97438 * 5 4 2 7 7 C 1.38244 * 119.99641 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99775 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46701 * 90.00477 * 8 7 6 10 10 O 1.21280 * 120.00268 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00082 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00336 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46684 * 324.99535 * 12 11 9 14 14 C 1.53002 * 109.47428 * 84.99288 * 12 11 9 15 15 C 1.52996 * 109.46972 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47165 * 300.00293 * 15 14 12 17 17 H 1.09000 * 109.47140 * 299.99954 * 16 15 14 18 18 O 1.42905 * 109.47266 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47592 * 60.00300 * 16 15 14 20 20 C 1.52997 * 109.47079 * 204.99808 * 12 11 9 21 21 C 1.38235 * 119.99752 * 0.27709 * 7 6 5 22 22 C 1.38233 * 120.00084 * 359.51400 * 21 7 6 23 23 H 0.96693 * 114.00085 * 299.99834 * 1 2 3 24 24 H 1.09003 * 109.46680 * 120.00102 * 2 1 3 25 25 H 1.48505 * 109.99714 * 178.68208 * 3 2 1 26 26 H 1.48503 * 109.99951 * 299.99802 * 3 2 1 27 27 H 1.08002 * 119.99806 * 359.97438 * 5 4 2 28 28 H 1.07993 * 120.00616 * 180.02562 * 6 5 4 29 29 H 1.08990 * 109.47415 * 330.00431 * 8 7 6 30 30 H 1.08999 * 109.47354 * 209.99796 * 8 7 6 31 31 H 0.97005 * 119.99682 * 359.97438 * 11 9 8 32 32 H 1.08992 * 109.46974 * 300.00496 * 14 12 11 33 33 H 1.08996 * 109.46550 * 60.00602 * 14 12 11 34 34 H 1.09000 * 109.47054 * 60.00300 * 15 14 12 35 35 H 1.09001 * 109.46997 * 180.02562 * 15 14 12 36 36 H 0.96705 * 113.99792 * 59.99753 * 18 16 15 37 37 H 1.08993 * 109.47839 * 180.02562 * 19 16 15 38 38 H 1.09000 * 109.47160 * 59.99666 * 19 16 15 39 39 H 1.09001 * 109.46922 * 59.99748 * 20 12 11 40 40 H 1.09000 * 109.47140 * 299.99448 * 20 12 11 41 41 H 1.08001 * 119.99779 * 179.72460 * 21 7 6 42 42 H 1.08001 * 119.99997 * 180.27341 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5974 -2.0339 -1.4492 6 6 2.0577 -2.6855 -2.5780 7 6 2.8517 -2.0133 -3.4886 8 6 3.3540 -2.7238 -4.7190 9 6 2.3607 -2.5514 -5.8392 10 8 1.3448 -1.9148 -5.6563 11 7 2.6009 -3.1056 -7.0440 12 6 1.6356 -2.9376 -8.1332 13 1 0.6249 -2.9316 -7.7251 14 6 1.9032 -1.6137 -8.8521 15 6 0.8947 -1.4380 -9.9891 16 6 1.0371 -2.5947 -10.9804 17 1 2.0477 -2.6008 -11.3889 18 8 0.0955 -2.4303 -12.0428 19 6 0.7695 -3.9185 -10.2616 20 6 1.7787 -4.0942 -9.1243 21 6 3.1899 -0.6914 -3.2672 22 6 2.7260 -0.0387 -2.1404 23 1 -0.3933 0.4416 0.7650 24 1 1.7923 -0.5139 0.8900 25 1 3.5346 1.7702 0.0321 26 1 1.5615 2.4678 -1.2085 27 1 0.9768 -2.5589 -0.7380 28 1 1.7965 -3.7193 -2.7492 29 1 3.4759 -3.7848 -4.5016 30 1 4.3137 -2.3012 -5.0162 31 1 3.4133 -3.6151 -7.1902 32 1 1.8013 -0.7898 -8.1460 33 1 2.9139 -1.6198 -9.2601 34 1 -0.1159 -1.4319 -9.5807 35 1 1.0855 -0.4951 -10.5016 36 1 0.2064 -1.6102 -12.5432 37 1 0.8714 -4.7425 -10.9676 38 1 -0.2411 -3.9124 -9.8532 39 1 1.5880 -5.0373 -8.6121 40 1 2.7894 -4.1002 -9.5324 41 1 3.8138 -0.1676 -3.9763 42 1 2.9866 0.9954 -1.9697 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:59:01 Heat of formation + Delta-G solvation = -106.504610 kcal Electronic energy + Delta-G solvation = -23103.776736 eV Core-core repulsion = 19628.283727 eV Total energy + Delta-G solvation = -3475.493009 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42503 -40.51657 -39.51975 -37.67570 -37.00452 -34.60328 -34.11943 -32.10729 -31.92670 -30.48021 -28.83254 -25.73620 -24.00456 -23.92650 -23.34207 -22.03646 -21.48122 -20.89838 -18.42801 -18.33803 -18.15285 -17.84697 -17.23867 -16.97756 -16.40675 -16.29687 -15.82993 -15.55255 -15.25159 -14.98730 -14.91500 -14.77390 -14.46969 -14.24031 -13.87909 -13.51726 -13.41619 -13.31235 -13.26071 -13.04795 -12.93780 -12.47848 -12.35832 -12.23890 -12.10079 -11.86536 -11.78901 -11.33727 -11.06536 -10.81884 -10.37703 -10.13179 -10.04116 -9.69358 -4.99676 0.09293 0.28538 1.26441 1.57862 1.58584 1.94154 2.06802 2.63495 3.23948 3.38934 3.53227 3.55712 3.65711 3.70510 3.79988 3.91653 3.95531 3.98818 4.08189 4.16256 4.22714 4.26091 4.30698 4.36788 4.38199 4.43721 4.52361 4.58382 4.60685 4.83826 4.87860 4.91828 4.94591 4.95920 5.04117 5.06960 5.19253 5.21831 5.28480 5.39002 5.43887 5.46437 5.86974 6.51917 6.82217 6.87729 7.23388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.081 4.081 3 Si 0.778 3.222 4 C -0.097 4.097 5 C -0.103 4.103 6 C -0.111 4.111 7 C -0.071 4.071 8 C -0.096 4.096 9 C 0.511 3.489 10 O -0.582 6.582 11 N -0.713 5.713 12 C 0.144 3.856 13 H 0.058 0.942 14 C -0.121 4.121 15 C -0.146 4.146 16 C 0.104 3.896 17 H 0.073 0.927 18 O -0.590 6.590 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.147 4.147 23 H 0.403 0.597 24 H 0.097 0.903 25 H -0.284 1.284 26 H -0.306 1.306 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.419 0.581 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.394 0.606 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -2.104 1.127 6.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.190 4.190 3 Si 0.685 3.315 4 C -0.097 4.097 5 C -0.121 4.121 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.135 4.135 9 C 0.299 3.701 10 O -0.462 6.462 11 N -0.366 5.366 12 C 0.039 3.961 13 H 0.076 0.924 14 C -0.159 4.159 15 C -0.185 4.185 16 C 0.046 3.954 17 H 0.091 0.909 18 O -0.398 6.398 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.130 4.130 22 C -0.164 4.164 23 H 0.254 0.746 24 H 0.114 0.886 25 H -0.211 1.211 26 H -0.234 1.234 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.257 0.743 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.155 0.845 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.459 -1.965 0.525 5.826 hybrid contribution 0.223 0.215 -0.498 0.587 sum 5.682 -1.750 0.027 5.946 Atomic orbital electron populations 1.86456 1.17376 1.82381 1.51384 1.24863 0.85788 1.11047 0.97317 0.94565 0.77258 0.75298 0.84412 1.19734 0.98383 0.95158 0.96451 1.21174 0.98734 0.93936 0.98229 1.21360 0.96648 1.01047 0.93871 1.19598 0.97785 0.93979 0.95761 1.20766 0.98847 1.04623 0.89305 1.21046 0.86960 0.77959 0.84125 1.90760 1.30105 1.42061 1.83238 1.45936 1.25201 1.55123 1.10315 1.20941 0.92821 0.95503 0.86871 0.92415 1.21786 1.00315 0.97025 0.96815 1.22194 0.99502 0.99666 0.97112 1.21903 0.92441 0.94537 0.86563 0.90875 1.86485 1.58539 1.46961 1.47822 1.21453 0.99602 0.96846 0.97244 1.21698 1.01000 0.97487 0.94740 1.21144 1.00324 0.94673 0.96855 1.20982 1.00578 0.98862 0.96006 0.74577 0.88558 1.21146 1.23432 0.84679 0.84009 0.84601 0.84947 0.74287 0.93635 0.89628 0.92929 0.90399 0.75633 0.90140 0.92598 0.89687 0.88655 0.84548 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.06 12.74 -148.98 -1.90 -3.96 16 2 C -0.08 -0.24 2.81 71.23 0.20 -0.04 16 3 Si 0.78 0.88 29.79 68.60 2.04 2.92 16 4 C -0.10 -0.87 5.42 -19.87 -0.11 -0.97 16 5 C -0.10 -0.80 9.61 22.27 0.21 -0.59 16 6 C -0.11 -0.64 9.70 22.27 0.22 -0.43 16 7 C -0.07 -0.35 4.37 -19.86 -0.09 -0.43 16 8 C -0.10 0.29 5.83 29.10 0.17 0.46 16 9 C 0.51 1.71 7.79 87.66 0.68 2.39 16 10 O -0.58 -8.70 15.70 -3.03 -0.05 -8.75 16 11 N -0.71 2.12 5.08 -442.54 -2.25 -0.12 16 12 C 0.14 0.00 2.45 44.99 0.11 0.11 16 13 H 0.06 0.41 7.58 -2.39 -0.02 0.39 16 14 C -0.12 -0.04 5.49 30.59 0.17 0.12 16 15 C -0.15 -0.06 5.54 30.59 0.17 0.11 16 16 C 0.10 -0.08 3.47 30.59 0.11 0.03 16 17 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 18 O -0.59 -1.38 13.32 -148.98 -1.98 -3.36 16 19 C -0.11 0.09 5.58 30.61 0.17 0.26 16 20 C -0.11 0.54 5.39 30.61 0.17 0.70 16 21 C -0.11 -0.81 9.70 22.27 0.22 -0.59 16 22 C -0.15 -1.43 8.67 22.27 0.19 -1.24 16 23 H 0.40 -3.07 8.74 -74.06 -0.65 -3.72 16 24 H 0.10 -0.18 7.96 -2.39 -0.02 -0.20 16 25 H -0.28 -1.57 7.11 99.48 0.71 -0.87 16 26 H -0.31 -3.08 7.11 99.48 0.71 -2.37 16 27 H 0.14 0.69 8.06 -2.91 -0.02 0.67 16 28 H 0.14 0.16 8.06 -2.91 -0.02 0.13 16 29 H 0.14 -1.21 8.08 -2.39 -0.02 -1.23 16 30 H 0.13 -1.12 8.08 -2.39 -0.02 -1.14 16 31 H 0.42 -4.42 8.60 -92.70 -0.80 -5.22 16 32 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.05 0.25 8.14 -2.39 -0.02 0.24 16 35 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.39 -2.14 9.08 -74.05 -0.67 -2.81 16 37 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.14 0.42 8.06 -2.91 -0.02 0.40 16 42 H 0.11 1.01 4.88 -2.91 -0.01 1.00 16 Total: 0.00 -27.40 343.15 -2.59 -29.98 By element: Atomic # 1 Polarization: -15.56 SS G_CDS: -1.04 Total: -16.60 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 2.59 Total: -0.11 kcal Atomic # 7 Polarization: 2.12 SS G_CDS: -2.25 Total: -0.12 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -3.93 Total: -16.07 kcal Atomic # 14 Polarization: 0.88 SS G_CDS: 2.04 Total: 2.92 kcal Total: -27.40 -2.59 -29.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.520 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds