Wall clock time and date at job start Sat Mar 6 2021 14:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.47118 * 2 1 4 4 C 1.50696 * 109.46644 * 119.99848 * 2 1 3 5 5 C 1.34451 * 126.48410 * 254.96965 * 4 2 1 6 6 N 1.36563 * 109.98862 * 180.02562 * 5 4 2 7 7 C 1.37824 * 109.85683 * 0.02562 * 6 5 4 8 8 C 1.38653 * 133.37303 * 180.30287 * 7 6 5 9 9 C 1.39330 * 119.66192 * 180.15039 * 8 7 6 10 10 C 1.47577 * 119.83071 * 179.76398 * 9 8 7 11 11 O 1.21592 * 119.99929 * 359.72990 * 10 9 8 12 12 N 1.34770 * 119.99922 * 179.72491 * 10 9 8 13 13 C 1.46500 * 120.00256 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46845 * 325.00694 * 13 12 10 15 15 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 16 16 C 1.52997 * 109.47164 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46978 * 299.99874 * 16 15 13 18 18 H 1.08992 * 109.47056 * 300.00064 * 17 16 15 19 19 O 1.42903 * 109.46797 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.46891 * 60.00410 * 17 16 15 21 21 C 1.52997 * 109.47473 * 205.00145 * 13 12 10 22 22 C 1.40194 * 120.33389 * 359.49166 * 9 8 7 23 23 C 1.36235 * 120.38350 * 0.27760 * 22 9 8 24 24 C 1.39883 * 119.95641 * 359.97438 * 23 22 9 25 25 H 0.96698 * 114.00372 * 300.00316 * 1 2 3 26 26 H 1.08996 * 109.47154 * 239.99625 * 2 1 3 27 27 H 1.48503 * 109.99991 * 300.00050 * 3 2 1 28 28 H 1.48498 * 109.99963 * 61.31591 * 3 2 1 29 29 H 1.08001 * 125.00650 * 0.02737 * 5 4 2 30 30 H 0.97002 * 125.06997 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.17077 * 359.91674 * 8 7 6 32 32 H 0.97005 * 120.00370 * 0.02562 * 12 10 9 33 33 H 1.09001 * 109.47002 * 60.00085 * 15 13 12 34 34 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 35 35 H 1.09002 * 109.47045 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47375 * 59.99966 * 16 15 13 37 37 H 0.96699 * 114.00345 * 60.00309 * 19 17 16 38 38 H 1.09004 * 109.47368 * 179.97438 * 20 17 16 39 39 H 1.09001 * 109.47372 * 59.99964 * 20 17 16 40 40 H 1.09002 * 109.47153 * 59.99757 * 21 13 12 41 41 H 1.09001 * 109.46832 * 299.99948 * 21 13 12 42 42 H 1.08001 * 119.81189 * 180.24942 * 22 9 8 43 43 H 1.07995 * 120.02496 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.4620 -0.1364 2.3243 6 7 2.8041 -1.0947 3.2351 7 6 2.4955 -2.3431 2.7393 8 6 2.6273 -3.6276 3.2445 9 6 2.2141 -4.7156 2.4785 10 6 2.3576 -6.0847 3.0104 11 8 2.8399 -6.2612 4.1125 12 7 1.9539 -7.1392 2.2747 13 6 2.0957 -8.4982 2.8029 14 1 3.0058 -8.5631 3.3992 15 6 0.8871 -8.8337 3.6791 16 6 1.0355 -10.2528 4.2312 17 6 1.1150 -11.2460 3.0701 18 1 0.2049 -11.1815 2.4739 19 8 1.2531 -12.5716 3.5859 20 6 2.3237 -10.9106 2.1941 21 6 2.1749 -9.4912 1.6415 22 6 1.6575 -4.5160 1.2073 23 6 1.5199 -3.2570 0.7053 24 6 1.9349 -2.1548 1.4601 25 1 -0.3934 0.4417 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5615 2.4679 -1.2085 28 1 1.5879 2.4585 1.2242 29 1 2.5977 0.9262 2.4624 30 1 3.2045 -0.9225 4.1016 31 1 3.0517 -3.7842 4.2252 32 1 1.5693 -6.9983 1.3953 33 1 -0.0231 -8.7687 3.0829 34 1 0.8306 -8.1263 4.5065 35 1 0.1743 -10.4919 4.8551 36 1 1.9457 -10.3173 4.8275 37 1 0.5206 -12.8519 4.1515 38 1 2.3806 -11.6185 1.3671 39 1 3.2338 -10.9752 2.7904 40 1 3.0360 -9.2522 1.0173 41 1 1.2648 -9.4262 1.0453 42 1 1.3363 -5.3652 0.6224 43 1 1.0908 -3.1099 -0.2747 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12335838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:59:04 Heat of formation + Delta-G solvation = -67.488198 kcal Electronic energy + Delta-G solvation = -25902.612113 eV Core-core repulsion = 22106.932791 eV Total energy + Delta-G solvation = -3795.679322 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46801 -41.21903 -39.68308 -37.99359 -37.53348 -36.99542 -34.55019 -33.26371 -31.89064 -30.98986 -30.71692 -29.06954 -26.47908 -24.92609 -23.90460 -23.61776 -22.90963 -21.50697 -21.00332 -20.74491 -19.40037 -18.46498 -18.19633 -17.86767 -17.23489 -16.97095 -16.48293 -16.17585 -16.06636 -15.66131 -15.52845 -15.46808 -15.13375 -14.86213 -14.76659 -14.71608 -14.50487 -14.15756 -13.88732 -13.37297 -13.27974 -13.09330 -12.98178 -12.66375 -12.49122 -12.44380 -12.21360 -12.19285 -11.77501 -11.75729 -11.30862 -11.12135 -10.79956 -10.77335 -10.44871 -10.17146 -9.36683 -8.79921 -4.83109 -0.32506 0.37864 1.38740 1.40278 1.64597 1.88221 1.89782 2.05079 2.23754 2.86961 3.26364 3.54706 3.56200 3.63038 3.69422 3.71558 3.86376 3.91133 4.00264 4.09748 4.13146 4.20099 4.27679 4.30838 4.38027 4.41903 4.49050 4.55569 4.59587 4.64410 4.80210 4.86962 4.94601 4.97837 5.00162 5.07857 5.10754 5.20627 5.24698 5.30076 5.41622 5.43500 5.52737 5.61848 5.98292 6.46721 6.51348 6.62468 6.85978 7.13749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.048 4.048 3 Si 0.773 3.227 4 C -0.224 4.224 5 C 0.090 3.910 6 N -0.577 5.577 7 C 0.067 3.933 8 C -0.068 4.068 9 C -0.136 4.136 10 C 0.561 3.439 11 O -0.583 6.583 12 N -0.707 5.707 13 C 0.144 3.856 14 H 0.065 0.935 15 C -0.122 4.122 16 C -0.145 4.145 17 C 0.103 3.897 18 H 0.072 0.928 19 O -0.589 6.589 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.083 4.083 24 C -0.080 4.080 25 H 0.383 0.617 26 H 0.114 0.886 27 H -0.309 1.309 28 H -0.269 1.269 29 H 0.207 0.793 30 H 0.434 0.566 31 H 0.127 0.873 32 H 0.415 0.585 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.153 0.847 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 2.926 -2.429 3.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.157 4.157 3 Si 0.677 3.323 4 C -0.231 4.231 5 C -0.040 4.040 6 N -0.181 5.181 7 C -0.040 4.040 8 C -0.090 4.090 9 C -0.140 4.140 10 C 0.350 3.650 11 O -0.464 6.464 12 N -0.359 5.359 13 C 0.039 3.961 14 H 0.083 0.917 15 C -0.161 4.161 16 C -0.183 4.183 17 C 0.045 3.955 18 H 0.090 0.910 19 O -0.398 6.398 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.101 4.101 24 C -0.085 4.085 25 H 0.232 0.768 26 H 0.132 0.868 27 H -0.237 1.237 28 H -0.195 1.195 29 H 0.223 0.777 30 H 0.274 0.726 31 H 0.144 0.856 32 H 0.254 0.746 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.171 0.829 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.415 3.350 -2.416 4.151 hybrid contribution -1.516 -0.094 1.222 1.949 sum -1.101 3.257 -1.193 3.639 Atomic orbital electron populations 1.86573 1.19151 1.80462 1.49924 1.24557 0.82714 1.11296 0.97118 0.94149 0.90001 0.71168 0.76962 1.20756 1.11903 0.91488 0.98996 1.22288 0.97698 0.95575 0.88422 1.41805 1.54151 1.03315 1.18792 1.18122 1.03887 0.86765 0.95207 1.20129 0.99953 0.88870 1.00004 1.19467 1.06167 0.91658 0.96738 1.18402 0.76835 0.85493 0.84225 1.90767 1.46763 1.86788 1.22095 1.45838 1.63345 1.05361 1.21326 1.21033 0.98563 0.80642 0.95851 0.91672 1.21805 0.98716 0.96137 0.99417 1.22185 1.02756 0.94662 0.98700 1.21902 0.98745 0.81203 0.93656 0.91033 1.86481 1.51479 1.31495 1.70305 1.21436 0.97613 0.96406 0.99543 1.21713 1.04692 0.92225 0.96485 1.20911 0.99527 0.98194 0.94002 1.20420 0.98928 0.90601 1.00170 1.19553 1.00936 0.94193 0.93808 0.76756 0.86802 1.23688 1.19506 0.77671 0.72610 0.85551 0.74606 0.89841 0.93290 0.90291 0.92527 0.75646 0.90150 0.92296 0.89653 0.88781 0.82907 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.05 12.88 -148.98 -1.92 -2.96 16 2 C -0.05 0.09 3.06 71.23 0.22 0.30 16 3 Si 0.77 -3.77 30.82 68.60 2.11 -1.65 16 4 C -0.22 0.18 5.57 -18.65 -0.10 0.08 16 5 C 0.09 -0.43 10.43 83.09 0.87 0.44 16 6 N -0.58 1.76 6.07 -187.72 -1.14 0.63 16 7 C 0.07 0.20 7.26 38.96 0.28 0.49 16 8 C -0.07 -0.38 9.61 22.63 0.22 -0.16 16 9 C -0.14 -0.65 5.87 -20.08 -0.12 -0.77 16 10 C 0.56 4.06 7.72 86.71 0.67 4.73 16 11 O -0.58 -9.06 15.97 -4.00 -0.06 -9.12 16 12 N -0.71 -0.14 5.03 -445.66 -2.24 -2.38 16 13 C 0.14 0.12 2.45 44.99 0.11 0.23 16 14 H 0.07 0.43 7.58 -2.39 -0.02 0.42 16 15 C -0.12 -0.08 5.49 30.60 0.17 0.09 16 16 C -0.14 0.01 5.54 30.59 0.17 0.18 16 17 C 0.10 -0.09 3.47 30.59 0.11 0.01 16 18 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 19 O -0.59 -1.17 13.32 -148.98 -1.98 -3.15 16 20 C -0.11 0.10 5.58 30.61 0.17 0.27 16 21 C -0.11 0.47 5.39 30.61 0.17 0.63 16 22 C -0.11 -0.01 9.46 22.28 0.21 0.20 16 23 C -0.08 -0.13 10.03 22.20 0.22 0.10 16 24 C -0.08 -0.25 6.35 -20.14 -0.13 -0.38 16 25 H 0.38 -1.47 8.70 -74.06 -0.64 -2.11 16 26 H 0.11 -0.24 7.96 -2.39 -0.02 -0.26 16 27 H -0.31 -1.25 7.11 99.48 0.71 -0.55 16 28 H -0.27 0.90 7.00 99.48 0.70 1.60 16 29 H 0.21 -2.38 6.27 -2.91 -0.02 -2.40 16 30 H 0.43 -3.63 8.96 -92.71 -0.83 -4.46 16 31 H 0.13 0.81 7.62 -2.91 -0.02 0.79 16 32 H 0.42 -2.56 6.59 -92.70 -0.61 -3.17 16 33 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.39 -2.27 9.08 -74.06 -0.67 -2.94 16 38 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H 0.15 -1.03 6.36 -2.91 -0.02 -1.05 16 43 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 Total: 0.00 -24.35 351.94 -3.65 -28.00 By element: Atomic # 1 Polarization: -14.14 SS G_CDS: -1.65 Total: -15.79 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 3.23 Total: 6.43 kcal Atomic # 7 Polarization: 1.62 SS G_CDS: -3.38 Total: -1.76 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -3.97 Total: -15.24 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.11 Total: -1.65 kcal Total: -24.35 -3.65 -28.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12335838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.487 kcal (2) G-P(sol) polarization free energy of solvation -24.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds