Wall clock time and date at job start Sat Mar 6 2021 14:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34809 * 125.90134 * 2 1 4 4 C 1.40999 * 107.48533 * 180.29037 * 3 2 1 5 5 C 1.50701 * 126.25546 * 179.75563 * 4 3 2 6 6 O 1.42902 * 109.46588 * 104.98103 * 5 4 3 7 7 Si 1.86296 * 109.47189 * 344.98156 * 5 4 3 8 8 C 1.34807 * 107.48542 * 359.74281 * 4 3 2 9 9 C 1.50701 * 125.90333 * 179.97438 * 8 4 3 10 10 N 1.36652 * 125.90400 * 179.85129 * 2 1 3 11 11 C 1.39666 * 125.68418 * 359.95729 * 10 2 1 12 12 C 1.40200 * 120.15341 * 89.69584 * 11 10 2 13 13 C 1.47578 * 120.19319 * 0.02727 * 12 11 10 14 14 O 1.21583 * 120.00001 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00056 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27917 * 15 13 12 17 17 H 1.09004 * 109.47372 * 34.71852 * 16 15 13 18 18 C 1.52999 * 109.46963 * 154.72290 * 16 15 13 19 19 C 1.53003 * 109.47087 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47241 * 300.00042 * 19 18 16 21 21 H 1.08995 * 109.47096 * 299.99819 * 20 19 18 22 22 O 1.42898 * 109.47199 * 179.97438 * 20 19 18 23 23 C 1.52999 * 109.47114 * 59.99975 * 20 19 18 24 24 C 1.52997 * 109.47036 * 274.72131 * 16 15 13 25 25 C 1.39660 * 119.61403 * 180.30333 * 12 11 10 26 26 C 1.37833 * 119.91531 * 359.42475 * 25 12 11 27 27 C 1.38533 * 120.31025 * 0.57793 * 26 25 12 28 28 C 1.38065 * 120.39350 * 359.72255 * 27 26 25 29 29 H 1.08997 * 109.47015 * 270.15037 * 1 2 3 30 30 H 1.08998 * 109.47553 * 30.15562 * 1 2 3 31 31 H 1.09009 * 109.46775 * 150.15383 * 1 2 3 32 32 H 1.07999 * 126.26009 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47067 * 224.97576 * 5 4 3 34 34 H 0.96702 * 113.99860 * 179.97438 * 6 5 4 35 35 H 1.48501 * 110.00185 * 60.00072 * 7 5 4 36 36 H 1.48500 * 109.99748 * 181.31869 * 7 5 4 37 37 H 1.08998 * 109.46657 * 269.99818 * 9 8 4 38 38 H 1.08996 * 109.47171 * 29.99668 * 9 8 4 39 39 H 1.09002 * 109.47031 * 149.99402 * 9 8 4 40 40 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 41 41 H 1.08997 * 109.46923 * 299.99333 * 18 16 15 42 42 H 1.08995 * 109.47266 * 59.99845 * 18 16 15 43 43 H 1.09004 * 109.47044 * 59.99688 * 19 18 16 44 44 H 1.08997 * 109.47066 * 179.97438 * 19 18 16 45 45 H 0.96702 * 113.99911 * 179.97438 * 22 20 19 46 46 H 1.08995 * 109.47266 * 59.99948 * 23 20 19 47 47 H 1.09000 * 109.47204 * 180.02562 * 23 20 19 48 48 H 1.09009 * 109.47238 * 300.00198 * 24 16 15 49 49 H 1.08997 * 109.47293 * 60.00168 * 24 16 15 50 50 H 1.08001 * 120.03633 * 179.72999 * 25 12 11 51 51 H 1.07995 * 119.84378 * 180.30305 * 26 25 12 52 52 H 1.07995 * 119.80221 * 179.74363 * 27 26 25 53 53 H 1.08003 * 119.96689 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6466 -0.0068 5 6 4.8647 1.5180 -0.0145 6 8 5.4617 1.5107 1.2839 7 14 4.3879 3.2607 -0.4689 8 6 3.6134 -0.7013 -0.0050 9 6 4.8195 -1.6048 -0.0110 10 7 2.3083 -1.1069 0.0029 11 6 1.8672 -2.4320 0.0072 12 6 1.6379 -3.1019 -1.2029 13 6 1.8619 -2.4110 -2.4877 14 8 2.2468 -1.2578 -2.4988 15 7 1.6398 -3.0585 -3.6487 16 6 1.8680 -2.3747 -4.9240 17 1 2.7157 -1.6965 -4.8261 18 6 2.1653 -3.4092 -6.0113 19 6 2.4030 -2.6950 -7.3434 20 6 1.1537 -1.8986 -7.7252 21 1 0.3062 -2.5769 -7.8228 22 8 1.3759 -1.2311 -8.9690 23 6 0.8563 -0.8641 -6.6378 24 6 0.6190 -1.5779 -5.3060 25 6 1.1908 -4.4249 -1.1855 26 6 0.9895 -5.0666 0.0176 27 6 1.2171 -4.4016 1.2114 28 6 1.6532 -3.0917 1.2091 29 1 -0.3633 0.0027 1.0276 30 1 -0.3634 0.8885 -0.5162 31 1 -0.3633 -0.8915 -0.5115 32 1 1.9666 2.1201 -0.0004 33 1 5.5775 1.1342 -0.7443 34 1 6.2602 2.0518 1.3526 35 1 3.4163 3.7954 0.5187 36 1 5.5960 4.1232 -0.5110 37 1 5.1041 -1.8239 -1.0401 38 1 5.6469 -1.1096 0.4972 39 1 4.5799 -2.5342 0.5056 40 1 1.3331 -3.9787 -3.6398 41 1 3.0551 -3.9767 -5.7392 42 1 1.3176 -4.0873 -6.1092 43 1 3.2506 -2.0166 -7.2458 44 1 2.6153 -3.4320 -8.1179 45 1 0.6232 -0.7059 -9.2735 46 1 1.7039 -0.1857 -6.5402 47 1 -0.0340 -0.2970 -6.9096 48 1 -0.2288 -2.2560 -5.4039 49 1 0.4071 -0.8409 -4.5314 50 1 1.0079 -4.9460 -2.1136 51 1 0.6484 -6.0912 0.0297 52 1 1.0527 -4.9110 2.1493 53 1 1.8281 -2.5797 2.1439 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:59:17 Heat of formation + Delta-G solvation = -34.533584 kcal Electronic energy + Delta-G solvation = -35596.272894 eV Core-core repulsion = 31207.183594 eV Total energy + Delta-G solvation = -4389.089301 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.86237 -41.22036 -40.00355 -39.08496 -37.80932 -36.96236 -34.75382 -34.16075 -33.61925 -32.41528 -31.87310 -30.51314 -30.13467 -29.24968 -27.24309 -25.22294 -24.57646 -23.86784 -23.63463 -22.95995 -21.57859 -21.20512 -20.84385 -19.99546 -18.85038 -18.45643 -18.19268 -17.79239 -17.56303 -16.67427 -16.46601 -16.17361 -15.94702 -15.78588 -15.70469 -15.48754 -15.25880 -15.04634 -14.87389 -14.68544 -14.56111 -14.25359 -14.17884 -14.14271 -13.76416 -13.64429 -13.44871 -13.35170 -13.25472 -13.20041 -13.11839 -12.99092 -12.90342 -12.55284 -12.45728 -12.42285 -12.31793 -12.17673 -11.90378 -11.74076 -11.28323 -10.97366 -10.75530 -10.35222 -10.27236 -10.11424 -9.97848 -9.54448 -8.68397 -4.87754 -0.40138 0.04610 1.20414 1.38091 1.58097 1.78734 1.84631 1.90574 2.00297 2.03427 2.62591 3.27192 3.54247 3.61051 3.63330 3.65604 3.72158 3.77236 3.96561 4.02686 4.04106 4.11267 4.18278 4.20289 4.22368 4.24153 4.24734 4.30345 4.37395 4.39804 4.43531 4.49619 4.57137 4.61467 4.65290 4.65461 4.68443 4.73014 4.88647 4.93372 4.95785 4.96174 5.01991 5.06148 5.10475 5.12430 5.18867 5.23443 5.25502 5.29097 5.32779 5.42041 5.47766 5.64254 6.08526 6.24209 6.47898 6.63147 6.69290 6.87726 7.19015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 C -0.209 4.209 4 C -0.171 4.171 5 C -0.045 4.045 6 O -0.558 6.558 7 Si 0.760 3.240 8 C 0.053 3.947 9 C -0.075 4.075 10 N -0.390 5.390 11 C 0.143 3.857 12 C -0.142 4.142 13 C 0.545 3.455 14 O -0.540 6.540 15 N -0.710 5.710 16 C 0.150 3.850 17 H 0.063 0.937 18 C -0.112 4.112 19 C -0.112 4.112 20 C 0.104 3.896 21 H 0.071 0.929 22 O -0.589 6.589 23 C -0.144 4.144 24 C -0.118 4.118 25 C -0.073 4.073 26 C -0.106 4.106 27 C -0.078 4.078 28 C -0.126 4.126 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.387 0.613 35 H -0.299 1.299 36 H -0.281 1.281 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.394 0.606 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.048 0.952 50 H 0.165 0.835 51 H 0.171 0.829 52 H 0.162 0.838 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -9.013 -2.693 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.232 4.232 4 C -0.177 4.177 5 C -0.155 4.155 6 O -0.367 6.367 7 Si 0.665 3.335 8 C -0.057 4.057 9 C -0.132 4.132 10 N -0.064 5.064 11 C 0.053 3.947 12 C -0.146 4.146 13 C 0.332 3.668 14 O -0.418 6.418 15 N -0.363 5.363 16 C 0.045 3.955 17 H 0.081 0.919 18 C -0.150 4.150 19 C -0.150 4.150 20 C 0.045 3.955 21 H 0.089 0.911 22 O -0.398 6.398 23 C -0.182 4.182 24 C -0.157 4.157 25 C -0.092 4.092 26 C -0.123 4.123 27 C -0.096 4.096 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.090 0.910 34 H 0.237 0.763 35 H -0.226 1.226 36 H -0.208 1.208 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.243 0.757 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.067 0.933 50 H 0.182 0.818 51 H 0.188 0.812 52 H 0.179 0.821 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.374 -8.353 -2.307 9.707 hybrid contribution 0.409 0.420 0.925 1.095 sum -3.965 -7.933 -1.383 8.976 Atomic orbital electron populations 1.20267 0.87049 1.03183 1.02766 1.20447 0.93947 0.84876 1.08227 1.20560 0.92396 0.97708 1.12581 1.18592 0.93446 0.92238 1.13402 1.24174 0.94445 1.10062 0.86806 1.86585 1.46217 1.72483 1.31459 0.93811 0.78815 0.72344 0.88515 1.20243 0.84426 0.93938 1.07089 1.20223 0.93457 0.97401 1.02119 1.40983 1.05173 1.03016 1.57269 1.17820 1.00013 0.83385 0.93511 1.20264 1.05963 0.96416 0.91994 1.18378 0.77815 0.86218 0.84424 1.90913 1.45516 1.17687 1.87648 1.45822 1.68591 1.17267 1.04590 1.20939 0.97724 0.94534 0.82268 0.91875 1.21691 1.03951 0.97194 0.92193 1.21421 0.97211 0.99281 0.97067 1.21896 0.98003 0.92902 0.82659 0.91107 1.86484 1.45868 1.68500 1.38921 1.22163 1.02384 0.98684 0.94996 1.21748 0.98119 0.99319 0.96471 1.21652 0.95352 0.91294 1.00915 1.21693 0.97691 1.01925 0.91002 1.21662 0.94681 0.92523 1.00764 1.21441 1.00296 0.96384 0.96377 0.90464 0.89510 0.92404 0.84560 0.91035 0.76330 1.22600 1.20758 0.91517 0.89956 0.91816 0.74959 0.89887 0.88847 0.92412 0.90315 0.75658 0.92571 0.90418 0.90066 0.93315 0.81768 0.81176 0.82086 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.09 71.23 0.72 0.31 16 2 C 0.03 0.39 5.98 41.02 0.25 0.63 16 3 C -0.21 -2.79 9.27 22.16 0.21 -2.59 16 4 C -0.17 -2.31 5.39 -19.98 -0.11 -2.42 16 5 C -0.05 -0.43 2.48 71.24 0.18 -0.25 16 6 O -0.56 -5.53 12.86 -148.98 -1.92 -7.45 16 7 Si 0.76 5.38 30.84 68.60 2.12 7.50 16 8 C 0.05 0.66 6.00 41.02 0.25 0.91 16 9 C -0.07 -0.60 9.87 71.24 0.70 0.10 16 10 N -0.39 -4.06 1.45 -319.53 -0.46 -4.52 16 11 C 0.14 0.74 4.52 38.50 0.17 0.91 16 12 C -0.14 -0.22 5.89 -19.99 -0.12 -0.34 16 13 C 0.54 2.50 7.73 86.71 0.67 3.17 16 14 O -0.54 -6.94 13.34 -3.98 -0.05 -6.99 16 15 N -0.71 1.83 5.03 -445.67 -2.24 -0.41 16 16 C 0.15 -0.18 2.46 44.99 0.11 -0.07 16 17 H 0.06 0.33 7.57 -2.39 -0.02 0.32 16 18 C -0.11 0.65 5.39 30.59 0.16 0.81 16 19 C -0.11 0.22 5.57 30.59 0.17 0.39 16 20 C 0.10 -0.21 3.47 30.59 0.11 -0.10 16 21 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 22 O -0.59 -0.65 13.32 -148.98 -1.98 -2.64 16 23 C -0.14 0.18 5.54 30.58 0.17 0.35 16 24 C -0.12 0.13 5.49 30.58 0.17 0.30 16 25 C -0.07 0.48 9.54 22.52 0.21 0.69 16 26 C -0.11 0.90 10.02 22.24 0.22 1.12 16 27 C -0.08 0.44 10.03 22.30 0.22 0.66 16 28 C -0.13 -0.12 9.96 22.35 0.22 0.10 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.30 7.83 -2.38 -0.02 0.28 16 32 H 0.14 1.58 6.55 -2.91 -0.02 1.56 16 33 H 0.07 0.48 7.96 -2.39 -0.02 0.46 16 34 H 0.39 0.43 8.74 -74.06 -0.65 -0.22 16 35 H -0.30 -4.13 7.06 99.48 0.70 -3.43 16 36 H -0.28 -2.49 7.11 99.48 0.71 -1.78 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.63 7.87 -2.39 -0.02 0.61 16 39 H 0.06 0.40 7.83 -2.39 -0.02 0.38 16 40 H 0.41 -3.88 6.63 -92.71 -0.61 -4.49 16 41 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.09 -0.91 8.14 -2.39 -0.02 -0.92 16 43 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.39 -2.57 9.08 -74.06 -0.67 -3.24 16 46 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 47 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 48 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 49 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.16 -2.21 6.40 -2.91 -0.02 -2.23 16 51 H 0.17 -2.52 8.06 -2.91 -0.02 -2.55 16 52 H 0.16 -1.70 8.06 -2.91 -0.02 -1.73 16 53 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 Total: 0.00 -26.09 424.05 -0.81 -26.90 By element: Atomic # 1 Polarization: -16.13 SS G_CDS: -0.96 Total: -17.09 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 4.69 Total: 4.70 kcal Atomic # 7 Polarization: -2.23 SS G_CDS: -2.70 Total: -4.93 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -3.95 Total: -17.08 kcal Atomic # 14 Polarization: 5.38 SS G_CDS: 2.12 Total: 7.50 kcal Total: -26.09 -0.81 -26.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.634 kcal (2) G-P(sol) polarization free energy of solvation -26.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds