Wall clock time and date at job start Sat Mar 6 2021 14:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 C 1.52994 * 109.47113 * 174.15637 * 3 2 1 5 5 C 1.53004 * 109.46859 * 294.15638 * 3 2 1 6 6 C 1.50701 * 109.47286 * 67.07750 * 5 3 2 7 7 O 1.21276 * 120.00152 * 233.69219 * 6 5 3 8 8 N 1.34777 * 119.99828 * 53.69383 * 6 5 3 9 9 C 1.46501 * 120.00057 * 174.79499 * 8 6 5 10 10 H 1.08998 * 109.46941 * 325.00202 * 9 8 6 11 11 C 1.52999 * 109.47125 * 84.99886 * 9 8 6 12 12 C 1.52996 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47091 * 299.99887 * 12 11 9 14 14 H 1.08998 * 109.47467 * 299.99939 * 13 12 11 15 15 O 1.42902 * 109.47178 * 179.97438 * 13 12 11 16 16 C 1.53009 * 109.47117 * 60.00104 * 13 12 11 17 17 C 1.52998 * 109.47339 * 204.99757 * 9 8 6 18 18 N 1.46495 * 109.47190 * 307.07537 * 5 3 2 19 19 C 1.36345 * 125.63645 * 67.29116 * 18 5 3 20 20 C 1.34855 * 108.21986 * 179.97438 * 19 18 5 21 21 C 1.40895 * 107.41439 * 359.77126 * 20 19 18 22 22 C 1.34849 * 107.41785 * 0.37664 * 21 20 19 23 23 C 1.50705 * 125.88969 * 179.88481 * 22 21 20 24 24 O 1.42901 * 109.47080 * 209.69013 * 23 22 21 25 25 Si 1.86295 * 109.47151 * 329.69584 * 23 22 21 26 26 H 1.09001 * 109.46658 * 193.63726 * 1 2 3 27 27 H 1.08997 * 109.46879 * 313.63713 * 1 2 3 28 28 H 1.08996 * 109.47106 * 73.63958 * 1 2 3 29 29 H 1.09000 * 109.47153 * 240.00246 * 2 1 3 30 30 H 1.09002 * 109.47110 * 120.00098 * 2 1 3 31 31 H 1.08997 * 109.47150 * 54.15213 * 3 2 1 32 32 H 1.09007 * 109.47040 * 186.29541 * 4 3 2 33 33 H 1.09001 * 109.47565 * 306.29431 * 4 3 2 34 34 H 1.09006 * 109.47305 * 66.29559 * 4 3 2 35 35 H 1.09003 * 109.47050 * 187.07416 * 5 3 2 36 36 H 0.96997 * 120.00081 * 354.79366 * 8 6 5 37 37 H 1.09003 * 109.47557 * 300.00155 * 11 9 8 38 38 H 1.09005 * 109.47422 * 59.99847 * 11 9 8 39 39 H 1.08996 * 109.47720 * 179.97438 * 12 11 9 40 40 H 1.09000 * 109.47355 * 59.99885 * 12 11 9 41 41 H 0.96706 * 113.99784 * 60.00504 * 15 13 12 42 42 H 1.08988 * 109.47367 * 179.97438 * 16 13 12 43 43 H 1.08998 * 109.47087 * 59.99603 * 16 13 12 44 44 H 1.08998 * 109.47467 * 300.00122 * 17 9 8 45 45 H 1.09005 * 109.46875 * 60.00416 * 17 9 8 46 46 H 1.07997 * 125.88844 * 0.02562 * 19 18 5 47 47 H 1.07997 * 126.28887 * 179.97438 * 20 19 18 48 48 H 1.07998 * 126.29024 * 180.24207 * 21 20 19 49 49 H 1.09004 * 109.46357 * 89.69347 * 23 22 21 50 50 H 0.96695 * 113.99614 * 60.00166 * 24 23 22 51 51 H 1.48495 * 110.00369 * 58.67575 * 25 23 22 52 52 H 1.48497 * 109.99885 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5629 1.4450 0.1469 5 6 1.6535 2.1201 -1.3162 6 6 0.1557 2.2738 -1.3812 7 8 -0.4567 1.8476 -2.3372 8 7 -0.5031 2.8850 -0.3768 9 6 -1.9419 3.1365 -0.4906 10 1 -2.1898 3.3654 -1.5270 11 6 -2.7138 1.8931 -0.0443 12 6 -4.2164 2.1555 -0.1638 13 6 -4.5995 3.3400 0.7255 14 1 -4.3520 3.1113 1.7620 15 8 -6.0029 3.5854 0.6134 16 6 -3.8277 4.5835 0.2791 17 6 -2.3246 4.3209 0.3990 18 7 2.1093 1.2989 -2.4405 19 6 1.6268 0.0674 -2.7717 20 6 2.2926 -0.3672 -3.8610 21 6 3.2163 0.6348 -4.2183 22 6 3.0857 1.6400 -3.3289 23 6 3.8778 2.9220 -3.3220 24 8 4.0024 3.3977 -1.9802 25 14 5.5724 2.6088 -4.0298 26 1 -0.3633 -0.9987 0.2423 27 1 -0.3633 0.7092 0.7437 28 1 -0.3633 0.2895 -0.9860 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5938 1.9857 0.8330 32 1 3.9154 2.4704 0.2592 33 1 3.8442 0.8658 1.0264 34 1 4.0143 1.0008 -0.7404 35 1 2.1222 3.1027 -1.3704 36 1 -0.0247 3.1584 0.4215 37 1 -2.4412 1.0492 -0.6781 38 1 -2.4659 1.6640 0.9921 39 1 -4.7663 1.2696 0.1537 40 1 -4.4640 2.3842 -1.2003 41 1 -6.5554 2.8380 0.8802 42 1 -4.1009 5.4275 0.9123 43 1 -4.0752 4.8122 -0.7574 44 1 -2.0767 4.0919 1.4355 45 1 -1.7747 5.2067 0.0810 46 1 0.8457 -0.4673 -2.2519 47 1 2.1427 -1.3088 -4.3682 48 1 3.9042 0.6028 -5.0502 49 1 3.3641 3.6697 -3.9263 50 1 4.4510 2.7819 -1.3848 51 1 5.4556 2.0836 -5.4138 52 1 6.3633 3.8656 -4.0291 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12360566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:59:30 Heat of formation + Delta-G solvation = -58.283779 kcal Electronic energy + Delta-G solvation = -32621.503994 eV Core-core repulsion = 28588.751750 eV Total energy + Delta-G solvation = -4032.752243 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.209 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.07465 -41.17647 -39.67324 -37.94617 -37.48660 -37.03481 -34.48851 -33.11399 -31.92528 -31.33204 -30.85472 -29.91075 -27.63730 -26.07327 -24.69640 -23.83690 -23.36300 -22.21700 -21.68505 -21.37931 -21.03618 -20.38125 -19.01161 -18.24930 -18.02897 -17.51331 -17.23164 -16.84782 -16.23271 -16.20174 -15.60704 -15.55921 -15.32789 -15.22944 -14.96858 -14.65364 -14.56927 -14.38187 -14.29780 -14.18953 -13.84995 -13.74531 -13.42889 -13.32908 -13.26764 -13.10905 -13.03245 -12.84159 -12.55604 -12.35409 -12.20896 -12.17212 -12.01920 -11.91177 -11.79516 -11.58715 -11.52055 -11.29406 -11.05367 -10.79552 -10.60468 -10.13567 -9.54309 -8.86996 -4.96448 1.05886 1.26384 1.41549 1.66282 1.81804 2.00032 2.08687 2.21698 3.21311 3.24914 3.42496 3.53842 3.59446 3.60769 3.67685 3.80444 3.97130 4.01969 4.07229 4.17067 4.17559 4.25139 4.26731 4.32010 4.35969 4.39710 4.44981 4.50473 4.60516 4.61818 4.66465 4.71796 4.73596 4.84911 4.91290 4.94150 4.98387 5.05651 5.06557 5.08092 5.12292 5.20452 5.23115 5.26977 5.29478 5.34622 5.36685 5.40514 5.45211 6.00639 6.24245 6.28250 6.48341 6.51809 6.83387 7.08509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C -0.089 4.089 4 C -0.159 4.159 5 C 0.105 3.895 6 C 0.516 3.484 7 O -0.566 6.566 8 N -0.708 5.708 9 C 0.149 3.851 10 H 0.057 0.943 11 C -0.119 4.119 12 C -0.146 4.146 13 C 0.104 3.896 14 H 0.073 0.927 15 O -0.590 6.590 16 C -0.113 4.113 17 C -0.113 4.113 18 N -0.408 5.408 19 C 0.015 3.985 20 C -0.226 4.226 21 C -0.206 4.206 22 C -0.021 4.021 23 C -0.050 4.050 24 O -0.552 6.552 25 Si 0.800 3.200 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.154 0.846 36 H 0.416 0.584 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.394 0.606 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.162 0.838 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.106 0.894 50 H 0.389 0.611 51 H -0.289 1.289 52 H -0.285 1.285 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 -0.466 9.104 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.108 4.108 4 C -0.216 4.216 5 C -0.001 4.001 6 C 0.303 3.697 7 O -0.445 6.445 8 N -0.360 5.360 9 C 0.044 3.956 10 H 0.075 0.925 11 C -0.157 4.157 12 C -0.185 4.185 13 C 0.045 3.955 14 H 0.091 0.909 15 O -0.399 6.399 16 C -0.151 4.151 17 C -0.151 4.151 18 N -0.084 5.084 19 C -0.115 4.115 20 C -0.250 4.250 21 C -0.231 4.231 22 C -0.132 4.132 23 C -0.159 4.159 24 O -0.363 6.363 25 Si 0.704 3.296 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.171 0.829 36 H 0.255 0.745 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.244 0.756 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.179 0.821 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.123 0.877 50 H 0.243 0.757 51 H -0.216 1.216 52 H -0.212 1.212 Dipole moment (debyes) X Y Z Total from point charges 3.264 0.747 7.643 8.345 hybrid contribution -1.192 -0.562 -0.310 1.353 sum 2.073 0.185 7.333 7.623 Atomic orbital electron populations 1.22367 0.96372 1.02512 1.02417 1.22019 0.95559 0.96421 1.03876 1.21589 0.98979 0.96686 0.93564 1.22022 0.92816 1.03626 1.03096 1.21962 0.91564 0.98854 0.87695 1.20732 0.90058 0.76663 0.82289 1.90787 1.69610 1.49209 1.34882 1.45899 1.09316 1.60565 1.20248 1.20946 0.79266 0.95427 0.99930 0.92452 1.21818 0.93975 0.97483 1.02467 1.22193 0.96474 0.99223 1.00565 1.21910 0.80751 0.94358 0.98437 0.90867 1.86487 1.17668 1.45041 1.90698 1.21439 0.94013 0.97595 1.02028 1.21712 0.95033 0.97288 1.01056 1.43504 1.28033 1.14197 1.22657 1.21865 1.02179 0.87682 0.99804 1.21029 1.02167 1.01768 0.99995 1.20786 1.04989 0.95299 1.02017 1.20897 0.97624 0.99073 0.95656 1.24924 1.09249 0.92482 0.89273 1.86421 1.81711 1.48815 1.19310 0.93168 0.74709 0.81248 0.80492 0.92785 0.90905 0.92871 0.91011 0.89976 0.86890 0.89827 0.90185 0.92538 0.82877 0.74542 0.92785 0.89594 0.90395 0.93032 0.75648 0.90294 0.92719 0.88510 0.89889 0.82079 0.84371 0.84222 0.87703 0.75710 1.21551 1.21219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.38 7.09 71.98 0.51 0.89 16 2 C -0.14 0.59 4.85 30.60 0.15 0.74 16 3 C -0.09 0.65 2.32 -10.79 -0.03 0.63 16 4 C -0.16 1.54 7.62 71.98 0.55 2.09 16 5 C 0.11 -0.15 2.22 44.25 0.10 -0.05 16 6 C 0.52 1.14 4.18 87.66 0.37 1.51 16 7 O -0.57 -6.76 13.70 -3.02 -0.04 -6.81 16 8 N -0.71 3.08 3.85 -442.54 -1.71 1.37 16 9 C 0.15 -0.29 2.41 44.99 0.11 -0.19 16 10 H 0.06 0.29 7.66 -2.39 -0.02 0.27 16 11 C -0.12 0.25 4.65 30.59 0.14 0.40 16 12 C -0.15 0.19 5.54 30.59 0.17 0.36 16 13 C 0.10 -0.21 3.47 30.60 0.11 -0.10 16 14 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 15 O -0.59 -0.85 13.32 -148.98 -1.98 -2.83 16 16 C -0.11 0.20 5.57 30.61 0.17 0.37 16 17 C -0.11 0.69 5.39 30.61 0.17 0.85 16 18 N -0.41 -1.45 1.88 -491.50 -0.92 -2.37 16 19 C 0.01 0.10 6.88 83.21 0.57 0.67 16 20 C -0.23 -1.76 10.86 22.14 0.24 -1.52 16 21 C -0.21 -1.36 9.43 22.14 0.21 -1.15 16 22 C -0.02 -0.09 5.88 41.08 0.24 0.15 16 23 C -0.05 -0.03 2.93 71.24 0.21 0.18 16 24 O -0.55 1.55 9.65 -148.98 -1.44 0.11 16 25 Si 0.80 -1.06 31.32 68.60 2.15 1.08 16 26 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.07 -0.37 6.31 -2.39 -0.02 -0.38 16 28 H 0.05 0.18 3.03 -2.39 -0.01 0.17 16 29 H 0.07 -0.02 4.46 -2.39 -0.01 -0.03 16 30 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.11 -1.37 6.85 -2.39 -0.02 -1.39 16 32 H 0.08 -1.05 6.71 -2.38 -0.02 -1.07 16 33 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H 0.06 -0.40 6.75 -2.38 -0.02 -0.42 16 35 H 0.15 -0.36 5.47 -2.39 -0.01 -0.37 16 36 H 0.42 -4.54 7.42 -92.71 -0.69 -5.23 16 37 H 0.05 0.16 7.08 -2.39 -0.02 0.14 16 38 H 0.09 -0.50 7.93 -2.38 -0.02 -0.52 16 39 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.39 -2.46 9.08 -74.05 -0.67 -3.14 16 42 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H 0.08 -0.54 8.14 -2.38 -0.02 -0.56 16 46 H 0.16 1.03 4.99 -2.91 -0.01 1.01 16 47 H 0.14 0.82 8.06 -2.91 -0.02 0.79 16 48 H 0.14 0.71 6.69 -2.91 -0.02 0.69 16 49 H 0.11 0.27 7.96 -2.38 -0.02 0.25 16 50 H 0.39 -3.31 4.73 -74.06 -0.35 -3.66 16 51 H -0.29 -1.33 6.78 99.48 0.67 -0.66 16 52 H -0.29 -1.11 7.11 99.48 0.71 -0.40 16 Total: 0.00 -20.50 371.53 -0.71 -21.21 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -0.75 Total: -17.59 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 3.98 Total: 5.82 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: -2.63 Total: -1.00 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -3.46 Total: -9.53 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.15 Total: 1.08 kcal Total: -20.50 -0.71 -21.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12360566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.070 kcal (2) G-P(sol) polarization free energy of solvation -20.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds