Wall clock time and date at job start Sat Mar 6 2021 14:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86301 * 109.47130 * 2 1 4 4 C 1.50700 * 109.47191 * 239.99871 * 2 1 3 5 5 C 1.38405 * 119.82541 * 300.00327 * 4 2 1 6 6 C 1.37884 * 120.16905 * 180.02562 * 5 4 2 7 7 C 1.39840 * 119.82784 * 359.97082 * 6 5 4 8 8 C 1.47207 * 120.17013 * 179.97438 * 7 6 5 9 9 C 1.34814 * 119.99878 * 180.02562 * 8 7 6 10 10 C 1.46427 * 119.99845 * 179.97438 * 9 8 7 11 11 O 1.21695 * 119.99891 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99822 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99765 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47141 * 324.99711 * 13 12 10 15 15 C 1.53005 * 109.47108 * 85.00181 * 13 12 10 16 16 C 1.52992 * 109.46929 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47164 * 299.99590 * 16 15 13 18 18 H 1.08995 * 109.47831 * 300.00188 * 17 16 15 19 19 O 1.42902 * 109.47217 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.47235 * 60.00374 * 17 16 15 21 21 C 1.52995 * 109.47022 * 204.99793 * 13 12 10 22 22 C 1.39835 * 119.65825 * 0.25748 * 7 6 5 23 23 C 1.37892 * 119.82853 * 359.53575 * 22 7 6 24 24 H 0.96700 * 113.99950 * 300.00638 * 1 2 3 25 25 H 1.09003 * 109.46911 * 119.99550 * 2 1 3 26 26 H 1.48504 * 109.99706 * 178.68181 * 3 2 1 27 27 H 1.48495 * 110.00016 * 299.99542 * 3 2 1 28 28 H 1.07996 * 119.91130 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.08916 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.00062 * 0.27238 * 8 7 6 31 31 H 1.07999 * 120.00033 * 359.97438 * 9 8 7 32 32 H 0.96999 * 120.00050 * 0.02562 * 12 10 9 33 33 H 1.09004 * 109.46660 * 300.00060 * 15 13 12 34 34 H 1.08997 * 109.46769 * 59.99647 * 15 13 12 35 35 H 1.09006 * 109.47090 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47531 * 59.99785 * 16 15 13 37 37 H 0.96699 * 113.99970 * 60.00103 * 19 17 16 38 38 H 1.08995 * 109.47254 * 179.97438 * 20 17 16 39 39 H 1.09003 * 109.47007 * 60.00081 * 20 17 16 40 40 H 1.09002 * 109.47791 * 300.00465 * 21 13 12 41 41 H 1.09006 * 109.46952 * 59.99987 * 21 13 12 42 42 H 1.08008 * 120.08490 * 179.71892 * 22 7 6 43 43 H 1.07995 * 119.91294 * 180.18695 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5947 -2.0355 -1.4459 6 6 2.0509 -2.6926 -2.5690 7 6 2.8550 -2.0164 -3.4919 8 6 3.3467 -2.7108 -4.6932 9 6 4.1222 -2.0557 -5.5804 10 6 4.6116 -2.7466 -6.7751 11 8 4.3180 -3.9118 -6.9673 12 7 5.3865 -2.0916 -7.6622 13 6 5.8757 -2.7826 -8.8578 14 1 6.0818 -3.8253 -8.6161 15 6 4.8136 -2.7142 -9.9570 16 6 5.3248 -3.4353 -11.2057 17 6 6.6084 -2.7612 -11.6943 18 1 6.4021 -1.7185 -11.9358 19 8 7.0856 -3.4343 -12.8611 20 6 7.6706 -2.8296 -10.5952 21 6 7.1595 -2.1091 -9.3467 22 6 3.1947 -0.6791 -3.2646 23 6 2.7272 -0.0345 -2.1389 24 1 -0.3933 0.4418 0.7650 25 1 1.7923 -0.5138 0.8901 26 1 3.5346 1.7702 0.0321 27 1 1.5616 2.4678 -1.2085 28 1 0.9739 -2.5564 -0.7320 29 1 1.7877 -3.7267 -2.7356 30 1 3.0828 -3.7437 -4.8659 31 1 4.3824 -1.0215 -5.4099 32 1 5.6202 -1.1627 -7.5091 33 1 3.8989 -3.1940 -9.6087 34 1 4.6075 -1.6715 -10.1987 35 1 4.5679 -3.3869 -11.9887 36 1 5.5312 -4.4780 -10.9644 37 1 6.4620 -3.4303 -13.6002 38 1 8.5852 -2.3497 -10.9435 39 1 7.8770 -3.8723 -10.3539 40 1 6.9536 -1.0663 -9.5884 41 1 7.9162 -2.1578 -8.5636 42 1 3.8191 -0.1516 -3.9706 43 1 2.9862 0.9992 -1.9635 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:59:34 Heat of formation + Delta-G solvation = -85.289743 kcal Electronic energy + Delta-G solvation = -23615.394128 eV Core-core repulsion = 20012.594924 eV Total energy + Delta-G solvation = -3602.799204 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.151 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27519 -40.65007 -39.62932 -37.75232 -37.06238 -35.23493 -34.51891 -32.39144 -31.93192 -31.51476 -29.52737 -27.08891 -24.45112 -24.11374 -23.91308 -22.84794 -21.85412 -21.29339 -20.34439 -18.74386 -18.37674 -18.24671 -17.74407 -17.27418 -16.76465 -16.37571 -16.22928 -15.89553 -15.55703 -15.34734 -15.23816 -14.97808 -14.77660 -14.47063 -14.20835 -14.05306 -13.85784 -13.64001 -13.39134 -13.30442 -13.06060 -13.03607 -12.50879 -12.39364 -12.23305 -12.08694 -11.95643 -11.80066 -11.44103 -11.33920 -11.14091 -10.81500 -10.32865 -10.18463 -10.13927 -9.34368 -4.94212 -0.66848 0.22252 0.77320 1.29217 1.63677 1.95309 2.06955 2.14439 2.66743 3.22550 3.34865 3.46189 3.54198 3.62592 3.66692 3.72454 3.87407 3.97265 4.03886 4.08650 4.09700 4.16606 4.19954 4.25428 4.30550 4.36391 4.38395 4.47242 4.60550 4.69750 4.83141 4.84402 4.89738 4.96005 4.96548 5.02069 5.05454 5.07064 5.19272 5.25720 5.27584 5.33697 5.43695 5.46925 5.74980 6.47643 6.83217 6.88143 7.14909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.084 4.084 3 Si 0.774 3.226 4 C -0.081 4.081 5 C -0.102 4.102 6 C -0.098 4.098 7 C -0.082 4.082 8 C -0.020 4.020 9 C -0.209 4.209 10 C 0.543 3.457 11 O -0.590 6.590 12 N -0.708 5.708 13 C 0.143 3.857 14 H 0.063 0.937 15 C -0.121 4.121 16 C -0.145 4.145 17 C 0.104 3.896 18 H 0.072 0.928 19 O -0.589 6.589 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.096 4.096 23 C -0.145 4.145 24 H 0.404 0.596 25 H 0.096 0.904 26 H -0.286 1.286 27 H -0.296 1.296 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.418 0.582 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.394 0.606 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.154 0.846 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 6.599 3.699 7.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.193 4.193 3 Si 0.680 3.320 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.082 4.082 8 C -0.040 4.040 9 C -0.229 4.229 10 C 0.333 3.667 11 O -0.472 6.472 12 N -0.358 5.358 13 C 0.038 3.962 14 H 0.081 0.919 15 C -0.160 4.160 16 C -0.184 4.184 17 C 0.045 3.955 18 H 0.090 0.910 19 O -0.398 6.398 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.114 4.114 23 C -0.162 4.162 24 H 0.255 0.745 25 H 0.114 0.886 26 H -0.213 1.213 27 H -0.224 1.224 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.177 0.823 32 H 0.256 0.744 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.171 0.829 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.703 5.984 2.971 6.718 hybrid contribution -0.456 -0.400 -0.584 0.842 sum 0.247 5.584 2.387 6.078 Atomic orbital electron populations 1.86437 1.17097 1.82443 1.51438 1.24895 0.86007 1.11210 0.97225 0.94291 0.77362 0.75397 0.84968 1.19946 0.97243 0.94935 0.95972 1.21158 0.98995 0.93899 0.97979 1.21728 0.95701 1.00889 0.93264 1.19114 0.99683 0.94136 0.95229 1.22355 0.91709 0.99320 0.90568 1.23017 1.02948 1.02138 0.94792 1.18692 0.78147 0.85976 0.83881 1.90816 1.59484 1.18779 1.78129 1.45831 1.51263 1.16352 1.22399 1.21005 0.94088 0.96987 0.84138 0.91899 1.21797 0.97945 1.01809 0.94469 1.22187 0.98164 1.00032 0.97985 1.21896 0.92702 0.95414 0.85461 0.91022 1.86482 1.48236 1.79811 1.25235 1.21425 0.98532 1.01432 0.93678 1.21681 0.95435 1.00646 0.97265 1.21565 0.98916 0.93817 0.97100 1.20989 1.00283 0.99378 0.95547 0.74456 0.88634 1.21305 1.22398 0.84095 0.83609 0.85442 0.82312 0.74436 0.93305 0.89842 0.90256 0.92599 0.75614 0.90164 0.92366 0.88830 0.89772 0.82888 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.55 12.74 -148.98 -1.90 -1.35 16 2 C -0.08 0.12 2.81 71.24 0.20 0.32 16 3 Si 0.77 -2.42 29.77 68.60 2.04 -0.37 16 4 C -0.08 -0.31 5.43 -19.79 -0.11 -0.42 16 5 C -0.10 -0.34 9.59 22.23 0.21 -0.13 16 6 C -0.10 -0.28 9.80 22.57 0.22 -0.06 16 7 C -0.08 -0.25 5.87 -20.15 -0.12 -0.37 16 8 C -0.02 -0.06 9.46 23.84 0.23 0.16 16 9 C -0.21 -0.18 9.41 23.62 0.22 0.04 16 10 C 0.54 3.02 7.71 86.38 0.67 3.68 16 11 O -0.59 -8.79 15.89 -4.33 -0.07 -8.86 16 12 N -0.71 0.61 5.07 -446.75 -2.27 -1.66 16 13 C 0.14 0.10 2.46 44.99 0.11 0.21 16 14 H 0.06 0.43 7.58 -2.39 -0.02 0.42 16 15 C -0.12 -0.08 5.49 30.59 0.17 0.09 16 16 C -0.15 -0.02 5.54 30.59 0.17 0.15 16 17 C 0.10 -0.08 3.47 30.59 0.11 0.03 16 18 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 19 O -0.59 -1.27 13.32 -148.98 -1.98 -3.26 16 20 C -0.11 0.08 5.57 30.58 0.17 0.25 16 21 C -0.11 0.46 5.39 30.57 0.16 0.63 16 22 C -0.10 -0.18 9.41 22.57 0.21 0.03 16 23 C -0.14 -0.55 8.65 22.23 0.19 -0.35 16 24 H 0.40 -4.64 8.74 -74.06 -0.65 -5.29 16 25 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 26 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 27 H -0.30 -1.30 7.11 99.48 0.71 -0.59 16 28 H 0.14 0.11 8.06 -2.91 -0.02 0.08 16 29 H 0.15 -0.09 8.06 -2.91 -0.02 -0.12 16 30 H 0.13 0.66 7.52 -2.91 -0.02 0.64 16 31 H 0.16 -0.94 6.07 -2.91 -0.02 -0.96 16 32 H 0.42 -3.27 8.58 -92.71 -0.80 -4.06 16 33 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.08 -0.16 8.14 -2.38 -0.02 -0.18 16 36 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.39 -2.22 9.08 -74.06 -0.67 -2.89 16 38 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 42 H 0.15 -0.59 6.17 -2.91 -0.02 -0.61 16 43 H 0.12 0.31 4.85 -2.91 -0.01 0.29 16 Total: 0.00 -23.68 353.02 -2.39 -26.07 By element: Atomic # 1 Polarization: -13.81 SS G_CDS: -1.03 Total: -14.84 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 2.82 Total: 4.27 kcal Atomic # 7 Polarization: 0.61 SS G_CDS: -2.27 Total: -1.66 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -3.95 Total: -13.47 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: 2.04 Total: -0.37 kcal Total: -23.68 -2.39 -26.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.215 kcal (2) G-P(sol) polarization free energy of solvation -23.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds