Wall clock time and date at job start Sat Mar 6 2021 14:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47300 * 2 1 4 4 C 1.50694 * 109.47123 * 120.00385 * 2 1 3 5 5 C 1.37818 * 119.94057 * 14.99892 * 4 2 1 6 6 C 1.39678 * 119.87732 * 180.02562 * 5 4 2 7 7 C 1.47726 * 120.11336 * 180.02562 * 6 5 4 8 8 O 1.21562 * 119.99968 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99255 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99368 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47020 * 35.00475 * 10 9 7 12 12 C 1.52997 * 109.46741 * 155.00201 * 10 9 7 13 13 C 1.52996 * 109.47165 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46969 * 299.99896 * 13 12 10 15 15 H 1.09000 * 109.47312 * 299.99939 * 14 13 12 16 16 O 1.42905 * 109.47079 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.46982 * 60.00261 * 14 13 12 18 18 C 1.52989 * 109.47205 * 275.00116 * 10 9 7 19 19 C 1.39630 * 119.76297 * 0.27465 * 6 5 4 20 20 C 1.37857 * 119.88001 * 359.44654 * 19 6 5 21 21 C 1.38637 * 120.11844 * 0.57615 * 20 19 6 22 22 F 1.35105 * 119.87926 * 179.69388 * 21 20 19 23 23 H 0.96693 * 113.99976 * 299.99672 * 1 2 3 24 24 H 1.09003 * 109.46907 * 240.00426 * 2 1 3 25 25 H 1.48495 * 110.00149 * 178.68335 * 3 2 1 26 26 H 1.48496 * 110.00041 * 300.00464 * 3 2 1 27 27 H 1.07993 * 120.06146 * 0.02562 * 5 4 2 28 28 H 0.96991 * 120.00485 * 0.02562 * 9 7 6 29 29 H 1.09000 * 109.47140 * 60.00347 * 12 10 9 30 30 H 1.09001 * 109.47375 * 300.00330 * 12 10 9 31 31 H 1.09004 * 109.47298 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47552 * 59.99988 * 13 12 10 33 33 H 0.96705 * 113.99788 * 180.02562 * 16 14 13 34 34 H 1.08992 * 109.47061 * 59.99708 * 17 14 13 35 35 H 1.09001 * 109.46812 * 180.02562 * 17 14 13 36 36 H 1.09000 * 109.47424 * 300.00111 * 18 10 9 37 37 H 1.09001 * 109.47294 * 60.00754 * 18 10 9 38 38 H 1.08001 * 120.05838 * 179.70238 * 19 6 5 39 39 H 1.08002 * 119.94093 * 180.29219 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.0731 -1.4947 1.9704 6 6 1.5399 -2.1522 3.1109 7 6 0.6246 -2.9946 3.9077 8 8 -0.5370 -3.1168 3.5709 9 7 1.0778 -3.6283 5.0075 10 6 0.1699 -4.4633 5.7980 11 1 -0.5393 -4.9579 5.1343 12 6 0.9779 -5.5172 6.5577 13 6 0.0298 -6.3897 7.3828 14 6 -0.7312 -5.5138 8.3801 15 1 -0.0223 -5.0191 9.0441 16 8 -1.6172 -6.3286 9.1504 17 6 -1.5393 -4.4598 7.6204 18 6 -0.5905 -3.5871 6.7953 19 6 2.8735 -2.0062 3.4981 20 6 3.7249 -1.2239 2.7473 21 6 3.2562 -0.5732 1.6164 22 9 4.0933 0.1972 0.8877 23 1 -0.3933 0.4416 0.7650 24 1 1.7924 -0.5138 -0.8901 25 1 3.5346 1.7703 0.0321 26 1 1.5615 2.4679 -1.2084 27 1 0.0414 -1.6007 1.6691 28 1 2.0047 -3.5311 5.2760 29 1 1.6871 -5.0226 7.2214 30 1 1.5197 -6.1415 5.8472 31 1 0.6055 -7.1403 7.9244 32 1 -0.6792 -6.8844 6.7189 33 1 -2.1337 -5.8382 9.8046 34 1 -2.2481 -4.9545 6.9565 35 1 -2.0810 -3.8356 8.3309 36 1 0.1187 -3.0924 7.4589 37 1 -1.1662 -2.8362 6.2540 38 1 3.2383 -2.5086 4.3818 39 1 4.7578 -1.1141 3.0432 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12496548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:59:44 Heat of formation + Delta-G solvation = -134.281195 kcal Electronic energy + Delta-G solvation = -23813.703280 eV Core-core repulsion = 20023.089431 eV Total energy + Delta-G solvation = -3790.613849 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.42007 -41.57123 -40.24957 -39.30539 -37.71583 -37.00221 -34.66180 -32.73900 -31.99616 -31.85387 -29.36591 -27.10467 -25.12337 -23.86973 -23.25091 -22.95420 -21.51048 -20.94998 -19.32331 -18.79261 -18.23143 -18.10419 -17.72996 -17.17875 -17.05861 -16.45788 -16.08328 -15.85981 -15.73962 -15.49191 -15.18345 -15.09647 -14.76030 -14.71473 -14.24994 -13.99236 -13.74409 -13.41107 -13.33894 -13.24135 -12.99117 -12.78262 -12.44344 -12.35156 -12.17044 -11.74204 -11.44072 -11.29097 -11.15206 -10.92335 -10.75840 -10.22745 -10.03196 -9.70838 -5.04918 -0.50616 0.02958 1.20442 1.59309 1.61992 1.93141 2.00269 2.59294 2.99619 3.23540 3.29057 3.34239 3.57422 3.62997 3.70455 3.72551 3.98412 4.04374 4.08728 4.13052 4.22208 4.30717 4.34342 4.40608 4.44696 4.59298 4.65323 4.79936 4.88817 4.91047 4.95514 5.02342 5.04090 5.09206 5.11807 5.13214 5.25792 5.31569 5.45031 5.61409 6.45247 6.60000 6.88160 7.12451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.072 4.072 3 Si 0.764 3.236 4 C -0.157 4.157 5 C -0.030 4.030 6 C -0.150 4.150 7 C 0.560 3.440 8 O -0.576 6.576 9 N -0.706 5.706 10 C 0.143 3.857 11 H 0.064 0.936 12 C -0.113 4.113 13 C -0.113 4.113 14 C 0.103 3.897 15 H 0.073 0.927 16 O -0.591 6.591 17 C -0.146 4.146 18 C -0.121 4.121 19 C -0.043 4.043 20 C -0.145 4.145 21 C 0.104 3.896 22 F -0.131 7.131 23 H 0.397 0.603 24 H 0.114 0.886 25 H -0.255 1.255 26 H -0.305 1.305 27 H 0.142 0.858 28 H 0.417 0.583 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.394 0.606 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.175 0.825 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 1.520 7.089 8.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.181 4.181 3 Si 0.668 3.332 4 C -0.159 4.159 5 C -0.049 4.049 6 C -0.153 4.153 7 C 0.348 3.652 8 O -0.456 6.456 9 N -0.358 5.358 10 C 0.039 3.961 11 H 0.082 0.918 12 C -0.151 4.151 13 C -0.151 4.151 14 C 0.044 3.956 15 H 0.091 0.909 16 O -0.399 6.399 17 C -0.184 4.184 18 C -0.160 4.160 19 C -0.062 4.062 20 C -0.164 4.164 21 C 0.085 3.915 22 F -0.110 7.110 23 H 0.247 0.753 24 H 0.131 0.869 25 H -0.180 1.180 26 H -0.233 1.233 27 H 0.159 0.841 28 H 0.256 0.744 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.192 0.808 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.857 1.250 5.516 7.455 hybrid contribution -0.066 -0.012 -0.367 0.373 sum 4.791 1.238 5.149 7.141 Atomic orbital electron populations 1.86478 1.16825 1.81934 1.50701 1.25093 0.85625 1.10841 0.96585 0.94342 0.78751 0.74318 0.85829 1.20261 0.93002 1.02551 1.00058 1.20891 1.00526 0.91649 0.91789 1.19972 0.95162 1.02224 0.97992 1.18385 0.86881 0.79322 0.80630 1.90804 1.19755 1.64129 1.70916 1.45822 1.15048 1.48750 1.26152 1.21028 0.91932 0.91042 0.92101 0.91802 1.21704 0.97802 0.96479 0.99127 1.21438 0.98254 0.98235 0.97207 1.21925 0.90896 0.90564 0.92190 0.90883 1.86487 1.59017 1.39747 1.54668 1.22201 0.98601 0.97888 0.99734 1.21808 0.98716 0.97883 0.97571 1.21505 0.90393 0.95066 0.99215 1.21404 1.02938 0.98181 0.93828 1.18023 0.87392 0.93675 0.92414 1.91558 1.71235 1.71906 1.76257 0.75301 0.86920 1.18024 1.23310 0.84073 0.74441 0.88508 0.89740 0.90299 0.92502 0.75637 0.92712 0.90265 0.89509 0.92987 0.80751 0.81104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.10 11.64 -148.98 -1.73 -2.84 16 2 C -0.07 -0.09 2.96 71.23 0.21 0.12 16 3 Si 0.76 -0.01 30.81 68.60 2.11 2.10 16 4 C -0.16 -0.07 5.13 -19.86 -0.10 -0.18 16 5 C -0.03 -0.05 8.78 22.52 0.20 0.15 16 6 C -0.15 0.14 5.87 -20.09 -0.12 0.03 16 7 C 0.56 1.41 7.73 86.75 0.67 2.08 16 8 O -0.58 -6.85 16.01 -3.91 -0.06 -6.91 16 9 N -0.71 3.13 5.03 -445.53 -2.24 0.89 16 10 C 0.14 -0.35 2.45 44.99 0.11 -0.24 16 11 H 0.06 0.26 7.58 -2.39 -0.02 0.24 16 12 C -0.11 0.78 5.39 30.59 0.16 0.95 16 13 C -0.11 0.30 5.57 30.59 0.17 0.48 16 14 C 0.10 -0.29 3.47 30.60 0.11 -0.18 16 15 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 16 O -0.59 -0.39 13.32 -148.98 -1.98 -2.38 16 17 C -0.15 0.33 5.55 30.61 0.17 0.50 16 18 C -0.12 0.31 5.50 30.61 0.17 0.48 16 19 C -0.04 0.33 9.54 22.52 0.21 0.54 16 20 C -0.15 0.86 10.01 22.27 0.22 1.08 16 21 C 0.10 -0.07 6.67 22.47 0.15 0.08 16 22 F -0.13 -0.33 12.81 44.97 0.58 0.24 16 23 H 0.40 -2.34 8.43 -74.06 -0.62 -2.96 16 24 H 0.11 0.30 7.96 -2.39 -0.02 0.28 16 25 H -0.25 -1.05 5.27 99.48 0.52 -0.53 16 26 H -0.30 -2.31 7.11 99.48 0.71 -1.60 16 27 H 0.14 0.59 6.66 -2.91 -0.02 0.57 16 28 H 0.42 -4.94 6.63 -92.71 -0.61 -5.56 16 29 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 30 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 32 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.39 -2.78 9.08 -74.05 -0.67 -3.45 16 34 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.18 -2.71 6.40 -2.91 -0.02 -2.73 16 39 H 0.17 -1.85 8.06 -2.91 -0.02 -1.87 16 Total: 0.00 -21.82 320.69 -1.95 -23.77 By element: Atomic # 1 Polarization: -19.81 SS G_CDS: -0.95 Total: -20.77 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 2.34 Total: 5.88 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -2.24 Total: 0.89 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -3.78 Total: -12.12 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.58 Total: 0.24 kcal Atomic # 14 Polarization: -0.01 SS G_CDS: 2.11 Total: 2.10 kcal Total: -21.82 -1.95 -23.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12496548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.510 kcal (2) G-P(sol) polarization free energy of solvation -21.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds