Wall clock time and date at job start Sat Mar 6 2021 14:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47269 * 2 1 4 4 C 1.50708 * 109.47170 * 120.00109 * 2 1 3 5 5 C 1.35082 * 126.07350 * 255.26645 * 4 2 1 6 6 N 1.35038 * 107.97645 * 180.14025 * 5 4 2 7 7 C 1.46499 * 125.93031 * 179.89881 * 6 5 4 8 8 C 1.50703 * 109.47337 * 124.71123 * 7 6 5 9 9 O 1.21273 * 119.99921 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99935 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00072 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47021 * 34.99856 * 11 10 8 13 13 C 1.53005 * 109.47414 * 154.99744 * 11 10 8 14 14 C 1.52997 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 11 16 16 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 17 17 O 1.42903 * 109.46923 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.47233 * 60.00194 * 15 14 13 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 15 14 20 20 N 1.40066 * 108.14223 * 359.62864 * 6 5 4 21 21 C 1.31629 * 108.10318 * 0.23142 * 20 6 5 22 22 C 1.48422 * 126.03333 * 180.02562 * 21 20 6 23 23 C 1.39322 * 120.11732 * 144.70215 * 22 21 20 24 24 C 1.38025 * 119.87868 * 179.69493 * 23 22 21 25 25 C 1.38321 * 120.11571 * 0.57751 * 24 23 22 26 26 C 1.38321 * 120.24451 * 359.71477 * 25 24 23 27 27 C 1.38018 * 120.11936 * 359.97438 * 26 25 24 28 28 H 0.96695 * 113.99593 * 300.00258 * 1 2 3 29 29 H 1.09002 * 109.47599 * 240.00013 * 2 1 3 30 30 H 1.48502 * 110.00184 * 178.67601 * 3 2 1 31 31 H 1.48498 * 110.00273 * 299.99913 * 3 2 1 32 32 H 1.08005 * 126.01603 * 0.03301 * 5 4 2 33 33 H 1.08999 * 109.47190 * 4.71062 * 7 6 5 34 34 H 1.09005 * 109.47066 * 244.71278 * 7 6 5 35 35 H 0.97007 * 120.00235 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.46935 * 60.00059 * 13 11 10 37 37 H 1.09001 * 109.46812 * 300.00401 * 13 11 10 38 38 H 1.08993 * 109.47194 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46695 * 59.99734 * 14 13 11 40 40 H 0.96700 * 113.99509 * 60.00082 * 17 15 14 41 41 H 1.09002 * 109.47398 * 59.99826 * 18 15 14 42 42 H 1.09001 * 109.47194 * 180.02562 * 18 15 14 43 43 H 1.08996 * 109.47853 * 180.02562 * 19 18 15 44 44 H 1.09002 * 109.47153 * 300.00319 * 19 18 15 45 45 H 1.08004 * 120.06137 * 359.96936 * 23 22 21 46 46 H 1.07996 * 119.94728 * 180.29288 * 24 23 22 47 47 H 1.08008 * 119.87817 * 179.70337 * 25 24 23 48 48 H 1.08002 * 119.93965 * 180.02562 * 26 25 24 49 49 H 1.08001 * 120.06444 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.4583 -0.1247 2.3278 6 7 2.7885 -1.0991 3.2024 7 6 3.3929 -0.9010 4.5221 8 6 2.5387 -1.5655 5.5709 9 8 1.5251 -2.1476 5.2477 10 7 2.9012 -1.5128 6.8679 11 6 2.0706 -2.1582 7.8875 12 1 1.6346 -3.0693 7.4775 13 6 2.9331 -2.5073 9.1021 14 6 2.0657 -3.1820 10.1666 15 6 0.9472 -2.2288 10.5923 16 1 1.3828 -1.3177 11.0025 17 8 0.1366 -2.8591 11.5862 18 6 0.0846 -1.8798 9.3777 19 6 0.9520 -1.2051 8.3132 20 7 2.4470 -2.3317 2.6316 21 6 1.9300 -2.1027 1.4429 22 6 1.4329 -3.1303 0.4943 23 6 0.3265 -2.8630 -0.3092 24 6 -0.1278 -3.8199 -1.1941 25 6 0.5059 -5.0467 -1.2755 26 6 1.6010 -5.3196 -0.4757 27 6 2.0676 -4.3677 0.4081 28 1 -0.3932 0.4417 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 3.5347 1.7703 0.0322 31 1 1.5616 2.4679 -1.2085 32 1 2.5936 0.9362 2.4783 33 1 3.4630 0.1661 4.7332 34 1 4.3906 -1.3400 4.5344 35 1 3.7122 -1.0474 7.1264 36 1 3.3690 -1.5963 9.5120 37 1 3.7296 -3.1868 8.7988 38 1 2.6802 -3.4311 11.0316 39 1 1.6300 -4.0931 9.7563 40 1 0.6187 -3.1088 12.3864 41 1 -0.3510 -2.7909 8.9676 42 1 -0.7119 -1.2003 9.6809 43 1 0.3376 -0.9560 7.4481 44 1 1.3877 -0.2940 8.7234 45 1 -0.1720 -1.9072 -0.2430 46 1 -0.9824 -3.6121 -1.8209 47 1 0.1442 -5.7944 -1.9659 48 1 2.0923 -6.2790 -0.5435 49 1 2.9224 -4.5818 1.0324 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12622748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:59:47 Heat of formation + Delta-G solvation = -15.873555 kcal Electronic energy + Delta-G solvation = -31744.655936 eV Core-core repulsion = 27446.487503 eV Total energy + Delta-G solvation = -4298.168433 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.48719 -41.11039 -39.87235 -39.51489 -37.74452 -37.02065 -34.85060 -34.44291 -32.32914 -31.92284 -31.90165 -31.44516 -29.88428 -28.19889 -25.93695 -24.38308 -23.89790 -23.51805 -23.06862 -21.74707 -21.47506 -21.14604 -20.81016 -18.76181 -18.35016 -18.24980 -17.78078 -17.52634 -16.79333 -16.72675 -16.46584 -16.16265 -15.94120 -15.81954 -15.56679 -15.41851 -15.19774 -14.88814 -14.73170 -14.43996 -14.28109 -14.15815 -14.09314 -13.92522 -13.73658 -13.59652 -13.32704 -13.20888 -12.84766 -12.47546 -12.43303 -12.39181 -12.20079 -12.14599 -11.90198 -11.88453 -11.55073 -11.30853 -11.22792 -10.81780 -10.65229 -10.24936 -10.14076 -9.90086 -9.75080 -9.29308 -4.96758 0.05150 0.44866 0.84025 1.31024 1.44151 1.50375 1.66027 1.79549 2.06468 2.08375 2.88100 3.24272 3.37851 3.53228 3.59087 3.62568 3.67425 3.74167 3.95949 4.00598 4.03528 4.09745 4.10439 4.14453 4.16455 4.19101 4.29908 4.32858 4.34343 4.41225 4.43462 4.51082 4.61188 4.62735 4.79624 4.83682 4.86277 4.93049 4.98530 4.98879 5.06727 5.08238 5.15890 5.21368 5.29704 5.30391 5.44532 5.54491 5.60013 5.62781 5.94701 6.03800 6.49083 6.61267 6.86812 6.87574 7.19705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.042 4.042 3 Si 0.805 3.195 4 C -0.270 4.270 5 C 0.080 3.920 6 N -0.359 5.359 7 C 0.110 3.890 8 C 0.495 3.505 9 O -0.566 6.566 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.051 0.949 13 C -0.114 4.114 14 C -0.147 4.147 15 C 0.104 3.896 16 H 0.076 0.924 17 O -0.593 6.593 18 C -0.115 4.115 19 C -0.115 4.115 20 N -0.298 5.298 21 C 0.106 3.894 22 C -0.040 4.040 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.113 4.113 28 H 0.393 0.607 29 H 0.090 0.910 30 H -0.280 1.280 31 H -0.302 1.302 32 H 0.231 0.769 33 H 0.185 0.815 34 H 0.139 0.861 35 H 0.422 0.578 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.395 0.605 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.158 0.842 46 H 0.143 0.857 47 H 0.146 0.854 48 H 0.141 0.859 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 7.620 6.260 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.152 4.152 3 Si 0.710 3.290 4 C -0.282 4.282 5 C -0.065 4.065 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.280 3.720 9 O -0.443 6.443 10 N -0.361 5.361 11 C 0.042 3.958 12 H 0.070 0.930 13 C -0.152 4.152 14 C -0.185 4.185 15 C 0.046 3.954 16 H 0.094 0.906 17 O -0.401 6.401 18 C -0.153 4.153 19 C -0.153 4.153 20 N -0.119 5.119 21 C -0.059 4.059 22 C -0.041 4.041 23 C -0.132 4.132 24 C -0.149 4.149 25 C -0.136 4.136 26 C -0.150 4.150 27 C -0.132 4.132 28 H 0.243 0.757 29 H 0.107 0.893 30 H -0.207 1.207 31 H -0.230 1.230 32 H 0.247 0.753 33 H 0.202 0.798 34 H 0.157 0.843 35 H 0.261 0.739 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.245 0.755 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.175 0.825 46 H 0.161 0.839 47 H 0.164 0.836 48 H 0.159 0.841 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.314 6.726 5.677 10.832 hybrid contribution 0.340 -0.676 -0.341 0.830 sum 6.654 6.049 5.335 10.457 Atomic orbital electron populations 1.86329 1.17968 1.81546 1.50435 1.24638 0.84599 1.11090 0.94854 0.93993 0.77095 0.72874 0.85083 1.20658 1.14639 0.92255 1.00616 1.22919 0.97823 0.96915 0.88874 1.48161 1.47933 1.03595 1.14407 1.22026 0.96718 1.06631 0.75996 1.21135 0.86063 0.80397 0.84391 1.90836 1.27893 1.43897 1.81655 1.45792 1.28519 1.56774 1.05038 1.20909 0.91566 0.95164 0.88194 0.93026 1.21697 0.97571 1.02708 0.93227 1.22199 0.97476 0.98869 0.99976 1.21894 0.90285 0.95026 0.88224 0.90572 1.86501 1.40997 1.81754 1.30886 1.21439 0.98556 1.00624 0.94670 1.21751 0.96653 0.99270 0.97644 1.77689 1.20652 1.04527 1.09059 1.20859 0.98885 0.93823 0.92299 1.18099 0.97122 0.92599 0.96325 1.22080 0.95077 1.01618 0.94406 1.21446 1.00808 0.93675 0.99004 1.21603 0.95426 0.97521 0.99073 1.21348 0.97569 0.99755 0.96336 1.21321 1.00094 0.93062 0.98762 0.75669 0.89265 1.20673 1.23012 0.75310 0.79830 0.84294 0.73923 0.88244 0.90278 0.89097 0.92869 0.75481 0.93470 0.91344 0.93145 0.88969 0.82512 0.83945 0.83637 0.84074 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.90 10.10 -148.98 -1.50 -2.40 16 2 C -0.04 -0.07 2.01 71.24 0.14 0.07 16 3 Si 0.81 -3.21 30.74 68.60 2.11 -1.10 16 4 C -0.27 -1.17 5.34 -19.95 -0.11 -1.28 16 5 C 0.08 -0.15 9.96 83.47 0.83 0.68 16 6 N -0.36 -0.87 3.40 -351.91 -1.20 -2.07 16 7 C 0.11 -0.81 6.99 85.63 0.60 -0.21 16 8 C 0.49 0.18 7.82 87.66 0.69 0.86 16 9 O -0.57 -7.75 15.36 -3.01 -0.05 -7.80 16 10 N -0.71 4.57 5.08 -442.54 -2.25 2.32 16 11 C 0.15 -0.32 2.45 44.99 0.11 -0.21 16 12 H 0.05 0.33 7.58 -2.39 -0.02 0.31 16 13 C -0.11 0.86 5.39 30.60 0.16 1.02 16 14 C -0.15 0.67 5.55 30.59 0.17 0.84 16 15 C 0.10 -0.23 3.47 30.60 0.11 -0.12 16 16 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 17 O -0.59 -0.85 13.32 -148.98 -1.98 -2.83 16 18 C -0.11 -0.17 5.57 30.59 0.17 0.00 16 19 C -0.11 0.17 5.50 30.59 0.17 0.34 16 20 N -0.30 -3.79 11.63 -48.16 -0.56 -4.35 16 21 C 0.11 1.27 6.74 42.53 0.29 1.56 16 22 C -0.04 -0.52 5.80 -20.04 -0.12 -0.63 16 23 C -0.11 -1.22 8.94 22.48 0.20 -1.02 16 24 C -0.13 -1.02 10.03 22.24 0.22 -0.79 16 25 C -0.12 -0.76 10.04 22.31 0.22 -0.54 16 26 C -0.13 -1.07 10.03 22.24 0.22 -0.85 16 27 C -0.11 -1.36 9.75 22.48 0.22 -1.14 16 28 H 0.39 -2.42 8.70 -74.06 -0.64 -3.07 16 29 H 0.09 0.50 7.84 -2.39 -0.02 0.48 16 30 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 31 H -0.30 -1.23 7.11 99.48 0.71 -0.53 16 32 H 0.23 -3.13 6.41 -2.91 -0.02 -3.15 16 33 H 0.18 -3.46 8.07 -2.39 -0.02 -3.48 16 34 H 0.14 -1.61 8.14 -2.38 -0.02 -1.63 16 35 H 0.42 -6.40 8.60 -92.70 -0.80 -7.20 16 36 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 37 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.09 -0.73 8.14 -2.39 -0.02 -0.74 16 39 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.40 -2.87 9.08 -74.06 -0.67 -3.54 16 41 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.16 1.51 4.52 -2.91 -0.01 1.50 16 46 H 0.14 0.45 8.06 -2.91 -0.02 0.43 16 47 H 0.15 0.15 8.06 -2.91 -0.02 0.13 16 48 H 0.14 0.48 8.06 -2.91 -0.02 0.45 16 49 H 0.12 1.39 8.06 -2.91 -0.02 1.36 16 Total: 0.00 -37.78 399.69 -2.20 -39.98 By element: Atomic # 1 Polarization: -19.25 SS G_CDS: -1.08 Total: -20.33 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 4.30 Total: -1.42 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -4.00 Total: -4.10 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -3.54 Total: -13.03 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.11 Total: -1.10 kcal Total: -37.78 -2.20 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12622748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.109 kcal (2) G-P(sol) polarization free energy of solvation -37.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds