Wall clock time and date at job start Sat Mar 6 2021 15:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39277 * 121.02937 * 2 1 4 4 C 1.46497 * 134.20098 * 0.02562 * 3 2 1 5 5 C 1.50707 * 126.59644 * 359.97438 * 4 3 2 6 6 O 1.42894 * 109.47267 * 284.71104 * 5 4 3 7 7 Si 1.86302 * 109.46969 * 164.71375 * 5 4 3 8 8 C 1.34177 * 106.80385 * 179.71880 * 4 3 2 9 9 N 1.36944 * 109.95159 * 0.25820 * 8 4 3 10 10 C 1.37149 * 110.11671 * 0.02562 * 9 8 4 11 11 N 1.32820 * 132.97266 * 180.02562 * 10 9 8 12 12 C 1.31317 * 121.89070 * 179.17119 * 11 10 9 13 13 C 1.39748 * 121.02976 * 179.97438 * 2 1 3 14 14 C 1.47667 * 120.45510 * 0.02562 * 13 2 1 15 15 O 1.21569 * 119.99896 * 5.98403 * 14 13 2 16 16 N 1.34776 * 119.99786 * 185.98866 * 14 13 2 17 17 C 1.46498 * 119.99950 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.47489 * 34.99422 * 17 16 14 19 19 C 1.53000 * 109.47182 * 154.99751 * 17 16 14 20 20 C 1.53004 * 109.46923 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47488 * 300.00007 * 20 19 17 22 22 H 1.08997 * 109.47014 * 300.00113 * 21 20 19 23 23 O 1.42903 * 109.47053 * 179.97438 * 21 20 19 24 24 C 1.53000 * 109.47044 * 60.00067 * 21 20 19 25 25 C 1.52998 * 109.47151 * 300.00056 * 24 21 20 26 26 H 1.08997 * 109.47125 * 96.28683 * 1 2 3 27 27 H 1.09002 * 109.46909 * 216.28743 * 1 2 3 28 28 H 1.09001 * 109.46808 * 336.27995 * 1 2 3 29 29 H 1.09003 * 109.47014 * 44.71520 * 5 4 3 30 30 H 0.96696 * 114.00404 * 300.00324 * 6 5 4 31 31 H 1.48498 * 109.99701 * 180.02562 * 7 5 4 32 32 H 1.48503 * 109.99972 * 301.32014 * 7 5 4 33 33 H 1.08005 * 125.02034 * 180.29721 * 8 4 3 34 34 H 0.97002 * 124.94037 * 179.97438 * 9 8 4 35 35 H 1.07997 * 119.31011 * 180.26861 * 12 11 10 36 36 H 0.97003 * 120.00244 * 359.97438 * 16 14 13 37 37 H 1.08996 * 109.47567 * 299.99844 * 19 17 16 38 38 H 1.09001 * 109.47392 * 60.00194 * 19 17 16 39 39 H 1.09005 * 109.46962 * 60.00680 * 20 19 17 40 40 H 1.08997 * 109.47211 * 179.97438 * 20 19 17 41 41 H 0.96701 * 113.99870 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.46964 * 59.99636 * 24 21 20 43 43 H 1.08997 * 109.47043 * 179.97438 * 24 21 20 44 44 H 1.08997 * 109.47154 * 300.00104 * 25 24 21 45 45 H 1.08997 * 109.47439 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6100 0.0005 5 6 0.4525 3.1704 0.0006 6 8 -0.1168 3.0303 -1.3025 7 14 0.5060 4.9740 0.4643 8 6 2.9947 3.3126 0.0065 9 7 4.0668 2.4605 0.0041 10 6 3.6349 1.1589 -0.0043 11 7 4.2721 -0.0065 -0.0090 12 6 3.6267 -1.1501 -0.0009 13 6 2.2275 -1.1975 0.0005 14 6 1.5225 -2.4950 0.0005 15 8 0.3123 -2.5293 -0.1097 16 7 2.2208 -3.6413 0.1228 17 6 1.5215 -4.9286 0.1223 18 1 0.6669 -4.8776 -0.5523 19 6 2.4768 -6.0277 -0.3470 20 6 1.7466 -7.3723 -0.3469 21 6 1.2610 -7.6889 1.0690 22 1 2.1158 -7.7397 1.7434 23 8 0.5785 -8.9444 1.0688 24 6 0.3057 -6.5898 1.5382 25 6 1.0359 -5.2453 1.5382 26 1 -0.3633 -0.1125 -1.0215 27 1 -0.3633 -0.8284 0.6082 28 1 -0.3633 0.9409 0.4134 29 1 -0.1563 2.6273 0.7234 30 1 0.3743 3.4892 -1.9977 31 1 -0.8676 5.5381 0.4686 32 1 1.1253 5.1357 1.8043 33 1 3.0596 4.3906 0.0130 34 1 4.9965 2.7374 0.0071 35 1 4.1870 -2.0733 -0.0008 36 1 3.1865 -3.6140 0.2105 37 1 2.8231 -5.8020 -1.3555 38 1 3.3314 -6.0788 0.3277 39 1 0.8919 -7.3215 -1.0214 40 1 2.4270 -8.1553 -0.6816 41 1 0.2421 -9.2093 1.9359 42 1 -0.5490 -6.5390 0.8638 43 1 -0.0406 -6.8156 2.5467 44 1 1.8906 -5.2960 2.2126 45 1 0.3555 -4.4623 1.8730 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_12890568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:01 Heat of formation + Delta-G solvation = -53.349288 kcal Electronic energy + Delta-G solvation = -28716.341171 eV Core-core repulsion = 24700.311428 eV Total energy + Delta-G solvation = -4016.029743 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.86341 -41.27563 -39.80205 -38.70648 -37.71932 -37.05236 -35.14050 -34.55278 -31.96192 -31.87420 -31.32664 -29.35378 -28.71573 -26.44284 -24.84055 -24.09625 -23.87079 -22.98525 -21.73328 -21.06512 -20.60967 -19.31105 -18.82645 -18.20726 -17.75477 -17.56891 -17.14253 -16.68860 -16.60626 -16.22642 -16.01784 -15.57251 -15.51626 -15.37890 -15.08993 -14.80017 -14.66563 -14.27816 -14.14797 -13.97191 -13.78437 -13.67497 -13.37138 -13.34514 -13.25619 -13.12296 -12.96224 -12.42058 -12.29277 -12.18367 -12.01674 -11.74668 -11.31347 -11.24093 -11.14000 -10.79583 -10.52275 -10.20062 -10.16466 -9.63453 -9.11670 -4.98993 -0.36668 -0.09143 1.34687 1.42773 1.65302 1.74777 1.78267 2.01486 2.05372 2.73712 3.24803 3.32023 3.46376 3.58185 3.61458 3.61863 3.69564 3.72852 3.76002 4.01493 4.10055 4.14208 4.20784 4.25033 4.29299 4.31342 4.34026 4.41508 4.43140 4.58134 4.63254 4.67886 4.77246 4.87854 4.94623 4.97835 5.01531 5.09021 5.11776 5.15986 5.21745 5.24543 5.30380 5.37980 5.48453 5.72598 6.22834 6.46263 6.81789 6.86081 6.88133 7.15333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.059 3.941 3 C -0.168 4.168 4 C -0.207 4.207 5 C -0.051 4.051 6 O -0.558 6.558 7 Si 0.805 3.195 8 C 0.096 3.904 9 N -0.560 5.560 10 C 0.288 3.712 11 N -0.515 5.515 12 C 0.180 3.820 13 C -0.241 4.241 14 C 0.570 3.430 15 O -0.566 6.566 16 N -0.709 5.709 17 C 0.146 3.854 18 H 0.066 0.934 19 C -0.114 4.114 20 C -0.112 4.112 21 C 0.103 3.897 22 H 0.072 0.928 23 O -0.590 6.590 24 C -0.145 4.145 25 C -0.122 4.122 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.394 0.606 31 H -0.306 1.306 32 H -0.280 1.280 33 H 0.232 0.768 34 H 0.439 0.561 35 H 0.196 0.804 36 H 0.414 0.586 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.394 0.606 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 4.049 0.699 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.214 4.214 5 C -0.159 4.159 6 O -0.366 6.366 7 Si 0.709 3.291 8 C -0.030 4.030 9 N -0.166 5.166 10 C 0.054 3.946 11 N -0.228 5.228 12 C 0.012 3.988 13 C -0.248 4.248 14 C 0.358 3.642 15 O -0.447 6.447 16 N -0.361 5.361 17 C 0.042 3.958 18 H 0.085 0.915 19 C -0.152 4.152 20 C -0.150 4.150 21 C 0.045 3.955 22 H 0.090 0.910 23 O -0.398 6.398 24 C -0.183 4.183 25 C -0.160 4.160 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.244 0.756 31 H -0.234 1.234 32 H -0.206 1.206 33 H 0.248 0.752 34 H 0.281 0.719 35 H 0.212 0.788 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.243 0.757 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.938 4.453 0.862 8.290 hybrid contribution -0.727 -0.748 0.841 1.340 sum 6.211 3.705 1.703 7.430 Atomic orbital electron populations 1.20973 0.89631 1.02889 1.03118 1.20055 0.96881 0.90375 0.87629 1.19791 0.93418 0.94510 1.09830 1.20809 0.96379 0.90286 1.13951 1.24807 0.89926 1.12470 0.88733 1.86494 1.54479 1.78568 1.17018 0.94059 0.80636 0.72535 0.81855 1.22401 0.83615 0.97380 0.99623 1.41621 1.10726 1.01636 1.62647 1.18776 0.89410 0.86960 0.99408 1.66522 1.40800 0.96475 1.19038 1.22975 0.89570 0.95382 0.90912 1.20510 0.95540 0.93256 1.15543 1.18024 0.86470 0.84075 0.75602 1.90744 1.15196 1.87490 1.51250 1.45810 1.11369 1.04790 1.74093 1.21007 0.95739 0.82042 0.97042 0.91546 1.21710 0.98072 0.91856 1.03521 1.21427 1.00650 0.97184 0.95740 1.21908 0.93695 0.82321 0.97593 0.91041 1.86484 1.77109 1.38181 1.38023 1.22180 0.98977 0.94846 1.02303 1.21802 1.00759 0.96563 0.96919 0.90899 0.90143 0.91171 0.88786 0.75624 1.23411 1.20649 0.75185 0.71914 0.78788 0.74803 0.89613 0.88739 0.92343 0.90215 0.75667 0.92556 0.90398 0.89890 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 8.69 71.24 0.62 -0.48 16 2 C 0.06 0.52 5.98 -19.25 -0.12 0.40 16 3 C -0.17 -1.03 6.16 -20.19 -0.12 -1.16 16 4 C -0.21 -0.01 5.57 -18.63 -0.10 -0.12 16 5 C -0.05 0.02 2.07 71.24 0.15 0.17 16 6 O -0.56 -0.54 12.88 -148.98 -1.92 -2.45 16 7 Si 0.80 -4.21 30.76 68.60 2.11 -2.10 16 8 C 0.10 -0.64 10.44 82.97 0.87 0.23 16 9 N -0.56 2.13 6.04 -192.25 -1.16 0.97 16 10 C 0.29 1.19 8.42 134.03 1.13 2.32 16 11 N -0.52 -2.45 10.37 -191.74 -1.99 -4.43 16 12 C 0.18 0.35 10.67 85.20 0.91 1.26 16 13 C -0.24 -1.48 5.89 -19.99 -0.12 -1.60 16 14 C 0.57 3.94 7.68 86.73 0.67 4.61 16 15 O -0.57 -8.09 13.16 -3.93 -0.05 -8.15 16 16 N -0.71 0.39 5.03 -445.58 -2.24 -1.85 16 17 C 0.15 0.03 2.45 44.99 0.11 0.14 16 18 H 0.07 0.40 7.58 -2.39 -0.02 0.38 16 19 C -0.11 0.52 5.39 30.60 0.16 0.68 16 20 C -0.11 0.11 5.57 30.59 0.17 0.28 16 21 C 0.10 -0.10 3.47 30.59 0.11 0.00 16 22 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 23 O -0.59 -1.21 13.32 -148.98 -1.98 -3.19 16 24 C -0.14 0.03 5.54 30.59 0.17 0.20 16 25 C -0.12 -0.03 5.49 30.60 0.17 0.14 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.03 5.95 -2.39 -0.01 1.01 16 28 H 0.07 0.59 5.05 -2.39 -0.01 0.58 16 29 H 0.09 0.30 6.03 -2.39 -0.01 0.29 16 30 H 0.39 -3.10 8.70 -74.06 -0.64 -3.75 16 31 H -0.31 -1.13 7.11 99.48 0.71 -0.42 16 32 H -0.28 0.29 7.11 99.48 0.71 1.00 16 33 H 0.23 -3.86 6.35 -2.91 -0.02 -3.88 16 34 H 0.44 -4.19 8.96 -92.71 -0.83 -5.02 16 35 H 0.20 -1.28 6.43 -2.91 -0.02 -1.30 16 36 H 0.41 -2.99 6.68 -92.71 -0.62 -3.60 16 37 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.39 -2.22 9.08 -74.06 -0.67 -2.90 16 42 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 Total: 0.00 -28.40 357.49 -4.11 -32.52 By element: Atomic # 1 Polarization: -16.74 SS G_CDS: -1.64 Total: -18.39 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.77 Total: 7.07 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -5.39 Total: -5.31 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -3.95 Total: -13.79 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.11 Total: -2.10 kcal Total: -28.40 -4.11 -32.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_12890568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.833 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds