Wall clock time and date at job start Sat Mar 6 2021 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86304 * 109.46757 * 2 1 4 4 C 1.50697 * 109.47072 * 119.99859 * 2 1 3 5 5 C 1.38329 * 119.87336 * 65.00502 * 4 2 1 6 6 C 1.38003 * 120.12894 * 179.97438 * 5 4 2 7 7 C 1.39400 * 119.86913 * 359.97438 * 6 5 4 8 8 C 1.48277 * 120.12239 * 180.02562 * 7 6 5 9 9 C 1.39505 * 119.97194 * 179.97438 * 8 7 6 10 10 C 1.37671 * 120.02286 * 179.97438 * 9 8 7 11 11 C 1.39708 * 119.97725 * 0.02562 * 10 9 8 12 12 C 1.47714 * 120.02550 * 179.97438 * 11 10 9 13 13 O 1.21566 * 120.00116 * 0.02562 * 12 11 10 14 14 N 1.34782 * 120.00043 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00074 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.46813 * 35.00305 * 15 14 12 17 17 C 1.53000 * 109.46840 * 155.00031 * 15 14 12 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 15 20 20 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 21 21 O 1.42900 * 109.46976 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 23 23 C 1.52996 * 109.47185 * 275.00149 * 15 14 12 24 24 C 1.39713 * 119.94576 * 0.25328 * 11 10 9 25 25 C 1.37664 * 119.98040 * 359.46727 * 24 11 10 26 26 C 1.39402 * 119.74813 * 0.27266 * 7 6 5 27 27 C 1.37997 * 119.86906 * 359.43049 * 26 7 6 28 28 H 0.96697 * 113.99918 * 299.99679 * 1 2 3 29 29 H 1.08996 * 109.47302 * 240.00372 * 2 1 3 30 30 H 1.48498 * 109.99876 * 178.68073 * 3 2 1 31 31 H 1.48502 * 110.00084 * 299.99843 * 3 2 1 32 32 H 1.07999 * 119.93225 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.06163 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.99217 * 359.97438 * 9 8 7 35 35 H 1.07998 * 120.01261 * 179.97438 * 10 9 8 36 36 H 0.97002 * 119.99499 * 0.02562 * 14 12 11 37 37 H 1.09002 * 109.47398 * 300.00326 * 17 15 14 38 38 H 1.09001 * 109.47194 * 60.00507 * 17 15 14 39 39 H 1.08998 * 109.47533 * 59.99948 * 18 17 15 40 40 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 41 41 H 0.96708 * 114.00004 * 59.99909 * 21 19 18 42 42 H 1.09002 * 109.47045 * 180.02562 * 22 19 18 43 43 H 1.09001 * 109.47375 * 59.99966 * 22 19 18 44 44 H 1.08992 * 109.47554 * 299.99819 * 23 15 14 45 45 H 1.09004 * 109.47108 * 60.00069 * 23 15 14 46 46 H 1.08010 * 120.00671 * 179.71788 * 24 11 10 47 47 H 1.07993 * 119.98984 * 180.27713 * 25 24 11 48 48 H 1.08003 * 120.06153 * 179.72151 * 26 7 6 49 49 H 1.08000 * 119.93917 * 180.27238 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6832 -2.0611 1.3958 6 6 2.1412 -2.7170 2.5203 7 6 2.8556 -2.0157 3.4903 8 6 3.3508 -2.7150 4.7005 9 6 4.0659 -2.0102 5.6690 10 6 4.5258 -2.6583 6.7932 11 6 4.2765 -4.0224 6.9637 12 6 4.7698 -4.7189 8.1693 13 8 5.3926 -4.1051 9.0138 14 7 4.5294 -6.0350 8.3330 15 6 5.0192 -6.7259 9.5284 16 1 4.9732 -6.0506 10.3828 17 6 4.1476 -7.9535 9.8009 18 6 4.6587 -8.6747 11.0496 19 6 6.1065 -9.1165 10.8268 20 1 6.1529 -9.7919 9.9726 21 8 6.5840 -9.7896 11.9934 22 6 6.9781 -7.8889 10.5543 23 6 6.4669 -7.1677 9.3049 24 6 3.5652 -4.7283 5.9902 25 6 3.1013 -4.0771 4.8696 26 6 3.0982 -0.6535 3.3208 27 6 2.6407 -0.0095 2.1893 28 1 -0.3933 0.4416 0.7651 29 1 1.7924 -0.5138 -0.8900 30 1 3.5345 1.7704 0.0321 31 1 1.5614 2.4679 -1.2085 32 1 1.1299 -2.6034 0.6433 33 1 1.9471 -3.7718 2.6481 34 1 4.2590 -0.9559 5.5369 35 1 5.0797 -2.1127 7.5427 36 1 4.0328 -6.5248 7.6589 37 1 3.1162 -7.6387 9.9600 38 1 4.1937 -8.6287 8.9465 39 1 4.6123 -7.9994 11.9039 40 1 4.0381 -9.5495 11.2437 41 1 6.0774 -10.5796 12.2268 42 1 8.0094 -8.2036 10.3951 43 1 6.9317 -7.2134 11.4085 44 1 6.5130 -7.8429 8.4506 45 1 7.0878 -6.2931 9.1107 46 1 3.3758 -5.7839 6.1189 47 1 2.5477 -4.6217 4.1192 48 1 3.6473 -0.1043 4.0713 49 1 2.8318 1.0449 2.0548 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13158362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:05 Heat of formation + Delta-G solvation = -72.504470 kcal Electronic energy + Delta-G solvation = -29606.529213 eV Core-core repulsion = 25464.068380 eV Total energy + Delta-G solvation = -4142.460833 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.58719 -40.84554 -39.89733 -39.07520 -37.51792 -37.01921 -34.76754 -33.87380 -32.57975 -31.90308 -31.59341 -31.01693 -29.25466 -26.92030 -24.67156 -24.65502 -23.88629 -23.15407 -22.57397 -22.10373 -21.37881 -20.96491 -19.25603 -18.43595 -18.23381 -17.76238 -17.51388 -16.87283 -16.51386 -16.32875 -16.13119 -15.92781 -15.68791 -15.50635 -15.39269 -15.07071 -14.97013 -14.87065 -14.75456 -14.33658 -14.23690 -14.12758 -14.04922 -13.62173 -13.56373 -13.30042 -13.16450 -12.86060 -12.72041 -12.54551 -12.43125 -12.19779 -12.11313 -11.95521 -11.88447 -11.60221 -11.28300 -11.09158 -10.80684 -10.76256 -10.41718 -10.17115 -10.06499 -9.95657 -9.07671 -5.01453 -0.69338 0.34831 0.40507 0.49957 1.30296 1.62121 1.78023 1.95487 2.01135 2.60578 3.01086 3.26220 3.39935 3.52991 3.56578 3.63841 3.64634 3.69782 3.80501 3.87522 4.00829 4.03053 4.05624 4.10496 4.17022 4.26614 4.28226 4.30429 4.34205 4.37214 4.41629 4.47587 4.62175 4.65644 4.68155 4.85358 4.88049 4.91574 4.93544 4.99348 5.07213 5.08657 5.08904 5.13382 5.20318 5.21483 5.27091 5.29978 5.41549 5.43504 5.50090 5.65335 5.79590 5.93235 6.44392 6.75596 6.88550 7.11783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.771 3.229 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.122 4.122 10 C -0.071 4.071 11 C -0.153 4.153 12 C 0.556 3.444 13 O -0.581 6.581 14 N -0.707 5.707 15 C 0.143 3.857 16 H 0.064 0.936 17 C -0.116 4.116 18 C -0.145 4.145 19 C 0.103 3.897 20 H 0.072 0.928 21 O -0.591 6.591 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.073 4.073 25 C -0.121 4.121 26 C -0.107 4.107 27 C -0.119 4.119 28 H 0.395 0.605 29 H 0.107 0.893 30 H -0.287 1.287 31 H -0.301 1.301 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.416 0.584 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.395 0.605 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.159 0.841 47 H 0.156 0.844 48 H 0.147 0.853 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 -3.453 -1.829 6.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.140 4.140 10 C -0.090 4.090 11 C -0.156 4.156 12 C 0.345 3.655 13 O -0.462 6.462 14 N -0.359 5.359 15 C 0.039 3.961 16 H 0.082 0.918 17 C -0.154 4.154 18 C -0.183 4.183 19 C 0.045 3.955 20 H 0.090 0.910 21 O -0.400 6.400 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.092 4.092 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.136 4.136 28 H 0.245 0.755 29 H 0.124 0.876 30 H -0.214 1.214 31 H -0.229 1.229 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.254 0.746 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.245 0.755 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.176 0.824 47 H 0.174 0.826 48 H 0.164 0.836 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.380 -2.292 -2.192 4.635 hybrid contribution -0.178 -0.924 -0.327 0.996 sum -3.558 -3.215 -2.519 5.417 Atomic orbital electron populations 1.86474 1.17154 1.82158 1.50521 1.25147 0.85326 1.10587 0.97265 0.93775 0.77872 0.75635 0.84923 1.20531 0.99357 0.95221 0.96887 1.21106 0.99038 0.93993 0.97932 1.21518 0.96868 1.01014 0.93113 1.18940 0.99214 0.93893 0.93988 1.19151 0.96019 0.93959 0.93135 1.21389 0.98248 1.01285 0.93083 1.21261 0.96954 0.93455 0.97344 1.19997 1.04385 0.95203 0.95970 1.18595 0.78665 0.82400 0.85883 1.90776 1.42600 1.67322 1.45509 1.45853 1.57201 1.08554 1.24319 1.21035 0.93675 0.94072 0.87357 0.91767 1.21713 0.99221 0.95195 0.99222 1.22185 0.96350 1.01645 0.98109 1.21885 0.92576 0.93270 0.87775 0.90984 1.86498 1.60404 1.45772 1.47303 1.21429 0.99734 0.96213 0.97711 1.21798 0.95698 1.00030 0.98225 1.21475 0.94635 1.00876 0.92195 1.21474 1.00347 0.93515 0.98468 1.21492 0.99258 0.93713 0.98005 1.21137 0.98373 1.00200 0.93868 0.75472 0.87591 1.21440 1.22941 0.85084 0.83597 0.83387 0.85551 0.74587 0.89914 0.88768 0.92235 0.88996 0.75482 0.91428 0.92726 0.89661 0.93068 0.82362 0.82632 0.83569 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.38 12.83 -148.98 -1.91 -1.54 16 2 C -0.07 0.11 2.80 71.23 0.20 0.31 16 3 Si 0.77 -2.04 29.79 68.60 2.04 0.00 16 4 C -0.12 0.16 5.36 -19.82 -0.11 0.05 16 5 C -0.10 0.11 9.67 22.24 0.21 0.32 16 6 C -0.11 0.24 9.43 22.49 0.21 0.45 16 7 C -0.06 0.07 5.88 -20.05 -0.12 -0.05 16 8 C -0.02 0.02 5.88 -20.00 -0.12 -0.10 16 9 C -0.12 0.00 9.41 22.44 0.21 0.21 16 10 C -0.07 -0.25 9.58 22.49 0.22 -0.03 16 11 C -0.15 -0.36 5.88 -20.06 -0.12 -0.48 16 12 C 0.56 3.24 7.73 86.75 0.67 3.91 16 13 O -0.58 -8.68 16.00 -3.92 -0.06 -8.75 16 14 N -0.71 1.00 5.03 -445.53 -2.24 -1.24 16 15 C 0.14 -0.03 2.45 44.99 0.11 0.08 16 16 H 0.06 0.38 7.58 -2.39 -0.02 0.36 16 17 C -0.12 0.72 5.39 30.59 0.16 0.89 16 18 C -0.14 0.64 5.55 30.60 0.17 0.81 16 19 C 0.10 -0.16 3.47 30.60 0.11 -0.06 16 20 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 21 O -0.59 -0.88 13.32 -148.98 -1.98 -2.87 16 22 C -0.11 -0.24 5.57 30.61 0.17 -0.07 16 23 C -0.12 -0.09 5.50 30.61 0.17 0.08 16 24 C -0.07 0.28 9.52 22.49 0.21 0.50 16 25 C -0.12 0.46 9.41 22.44 0.21 0.67 16 26 C -0.11 0.25 9.43 22.49 0.21 0.46 16 27 C -0.12 0.34 8.65 22.24 0.19 0.53 16 28 H 0.40 -3.41 8.70 -74.06 -0.64 -4.05 16 29 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 30 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 31 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 32 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 33 H 0.15 -0.97 6.19 -2.91 -0.02 -0.99 16 34 H 0.15 -0.58 6.19 -2.91 -0.02 -0.60 16 35 H 0.13 0.67 7.64 -2.91 -0.02 0.65 16 36 H 0.42 -3.52 6.62 -92.71 -0.61 -4.14 16 37 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.40 -2.83 9.08 -74.05 -0.67 -3.50 16 42 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.16 -1.74 6.39 -2.91 -0.02 -1.76 16 47 H 0.16 -1.37 6.19 -2.91 -0.02 -1.39 16 48 H 0.15 -0.89 6.19 -2.91 -0.02 -0.90 16 49 H 0.15 -1.01 4.89 -2.91 -0.01 -1.02 16 Total: 0.00 -24.58 392.67 -2.05 -26.63 By element: Atomic # 1 Polarization: -19.83 SS G_CDS: -0.88 Total: -20.71 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 2.98 Total: 8.48 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -2.24 Total: -1.24 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -3.96 Total: -13.15 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.04 Total: 0.00 kcal Total: -24.58 -2.05 -26.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13158362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.876 kcal (2) G-P(sol) polarization free energy of solvation -24.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds