Wall clock time and date at job start Sat Mar 6 2021 15:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47150 * 2 1 4 4 C 1.50694 * 109.47536 * 239.99577 * 2 1 3 5 5 C 1.38894 * 119.67660 * 120.27871 * 4 2 1 6 6 C 1.36477 * 120.61618 * 180.28479 * 5 4 2 7 7 C 1.40058 * 119.82829 * 359.72209 * 6 5 4 8 8 C 1.41601 * 133.38090 * 180.02562 * 7 6 5 9 9 C 1.35864 * 107.72773 * 179.97438 * 8 7 6 10 10 C 1.47057 * 125.42774 * 180.02562 * 9 8 7 11 11 O 1.21651 * 119.99410 * 359.95887 * 10 9 8 12 12 N 1.34770 * 120.00356 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00088 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47367 * 34.99723 * 13 12 10 15 15 C 1.53000 * 109.47340 * 155.00092 * 13 12 10 16 16 C 1.52998 * 109.47291 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46872 * 299.99650 * 16 15 13 18 18 H 1.08998 * 109.47398 * 299.99680 * 17 16 15 19 19 O 1.42906 * 109.46862 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47051 * 60.00420 * 17 16 15 21 21 C 1.52998 * 109.46940 * 299.99539 * 20 17 16 22 22 N 1.38149 * 109.14813 * 359.97438 * 9 8 7 23 23 C 1.37492 * 108.79040 * 359.97438 * 22 9 8 24 24 C 1.37712 * 119.67423 * 300.00033 * 4 2 1 25 25 H 0.96699 * 114.00021 * 300.00633 * 1 2 3 26 26 H 1.09008 * 109.46730 * 119.99278 * 2 1 3 27 27 H 1.48499 * 109.99896 * 299.99755 * 3 2 1 28 28 H 1.48498 * 110.00132 * 61.31332 * 3 2 1 29 29 H 1.07999 * 119.69350 * 0.02562 * 5 4 2 30 30 H 1.07999 * 120.08454 * 179.74284 * 6 5 4 31 31 H 1.07994 * 126.13272 * 359.96292 * 8 7 6 32 32 H 0.96999 * 120.00016 * 359.97438 * 12 10 9 33 33 H 1.08999 * 109.47091 * 299.99570 * 15 13 12 34 34 H 1.09001 * 109.47192 * 59.99524 * 15 13 12 35 35 H 1.09001 * 109.47344 * 59.99675 * 16 15 13 36 36 H 1.09005 * 109.47312 * 179.97438 * 16 15 13 37 37 H 0.96695 * 113.99489 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47369 * 59.99850 * 20 17 16 39 39 H 1.08998 * 109.46808 * 180.02562 * 20 17 16 40 40 H 1.09001 * 109.47344 * 300.00326 * 21 20 17 41 41 H 1.08997 * 109.47477 * 180.02562 * 21 20 17 42 42 H 0.97000 * 125.60624 * 180.02562 * 22 9 8 43 43 H 1.08002 * 120.09919 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7343 -0.0307 -2.1372 6 6 3.1951 -0.6537 -3.2607 7 6 2.8618 -1.9926 -3.5012 8 6 3.1718 -2.9000 -4.5432 9 6 2.5714 -4.0837 -4.2532 10 6 2.6397 -5.2990 -5.0785 11 8 3.2736 -5.2941 -6.1168 12 7 1.9999 -6.4179 -4.6848 13 6 2.0685 -7.6286 -5.5067 14 1 3.0511 -7.6956 -5.9738 15 6 1.8382 -8.8575 -4.6248 16 6 1.9092 -10.1219 -5.4833 17 6 0.8314 -10.0632 -6.5677 18 1 -0.1510 -9.9962 -6.1003 19 8 0.8974 -11.2445 -7.3692 20 6 1.0617 -8.8344 -7.4496 21 6 0.9907 -7.5700 -6.5911 22 7 1.8873 -3.9643 -3.0589 23 6 2.0536 -2.6866 -2.5791 24 6 1.5947 -2.0290 -1.4415 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 0.8901 27 1 1.5615 2.4679 -1.2085 28 1 1.5878 2.4586 1.2241 29 1 2.9930 1.0017 -1.9538 30 1 3.8155 -0.1158 -3.9622 31 1 3.7767 -2.6888 -5.4125 32 1 1.4946 -6.4218 -3.8568 33 1 2.6058 -8.8991 -3.8520 34 1 0.8556 -8.7906 -4.1577 35 1 2.8917 -10.1891 -5.9507 36 1 1.7456 -10.9975 -4.8549 37 1 0.2413 -11.2753 -8.0789 38 1 2.0441 -8.9016 -7.9170 39 1 0.2936 -8.7924 -8.2218 40 1 0.0083 -7.5029 -6.1237 41 1 1.1543 -6.6945 -7.2194 42 1 1.3746 -4.6666 -2.6290 43 1 0.9732 -2.5502 -0.7284 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11353598_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:10 Heat of formation + Delta-G solvation = -62.672734 kcal Electronic energy + Delta-G solvation = -25743.795975 eV Core-core repulsion = 21948.325467 eV Total energy + Delta-G solvation = -3795.470508 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.67247 -41.03139 -39.64129 -38.83658 -37.12650 -37.02613 -34.62515 -33.28860 -32.01402 -31.33074 -30.41241 -29.53448 -26.80525 -24.56759 -24.01666 -23.41000 -22.60399 -21.87147 -21.44962 -20.87301 -19.53764 -18.56243 -18.28538 -17.95863 -17.60673 -16.93692 -16.60131 -16.41318 -16.04723 -15.70358 -15.60714 -15.22284 -15.05209 -14.86933 -14.71466 -14.65717 -14.26472 -14.22813 -13.86531 -13.50264 -13.45117 -13.36812 -13.12607 -12.73160 -12.53897 -12.32519 -12.30401 -12.11973 -11.88298 -11.67160 -11.42423 -11.23110 -10.92252 -10.85878 -10.50627 -10.26603 -9.29019 -8.79065 -4.95524 -0.31129 0.55263 1.01731 1.27183 1.59798 1.76445 1.89864 1.97264 2.27260 2.75481 3.09972 3.30999 3.42826 3.56907 3.58138 3.63319 3.83901 3.88009 3.99713 4.04006 4.06189 4.14752 4.20170 4.25940 4.29319 4.32826 4.39035 4.48353 4.50938 4.60365 4.70080 4.82739 4.89073 4.92333 4.96561 4.98430 5.00695 5.11858 5.17331 5.27910 5.39107 5.42040 5.57183 5.63603 5.98646 6.19742 6.35175 6.39679 6.63107 6.99311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.076 4.076 3 Si 0.686 3.314 4 C -0.041 4.041 5 C -0.143 4.143 6 C -0.050 4.050 7 C -0.117 4.117 8 C -0.098 4.098 9 C 0.011 3.989 10 C 0.586 3.414 11 O -0.516 6.516 12 N -0.726 5.726 13 C 0.144 3.856 14 H 0.096 0.904 15 C -0.124 4.124 16 C -0.110 4.110 17 C 0.103 3.897 18 H 0.056 0.944 19 O -0.568 6.568 20 C -0.150 4.150 21 C -0.128 4.128 22 N -0.579 5.579 23 C 0.116 3.884 24 C -0.104 4.104 25 H 0.380 0.620 26 H 0.077 0.923 27 H -0.254 1.254 28 H -0.262 1.262 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.159 0.841 32 H 0.396 0.604 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.380 0.620 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.417 0.583 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -0.400 4.096 4.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.186 4.186 3 Si 0.588 3.412 4 C -0.043 4.043 5 C -0.161 4.161 6 C -0.069 4.069 7 C -0.122 4.122 8 C -0.125 4.125 9 C -0.098 4.098 10 C 0.373 3.627 11 O -0.390 6.390 12 N -0.377 5.377 13 C 0.040 3.960 14 H 0.114 0.886 15 C -0.162 4.162 16 C -0.148 4.148 17 C 0.044 3.956 18 H 0.074 0.926 19 O -0.373 6.373 20 C -0.188 4.188 21 C -0.167 4.167 22 N -0.184 5.184 23 C 0.006 3.994 24 C -0.124 4.124 25 H 0.228 0.772 26 H 0.095 0.905 27 H -0.178 1.178 28 H -0.188 1.188 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.176 0.824 32 H 0.229 0.771 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.228 0.772 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.172 -0.183 3.188 3.198 hybrid contribution -2.254 -0.364 0.838 2.432 sum -2.426 -0.547 4.026 4.732 Atomic orbital electron populations 1.86591 1.17788 1.80213 1.49812 1.24821 0.84482 1.11171 0.98116 0.94908 0.91741 0.74356 0.80241 1.18924 0.97316 0.92886 0.95165 1.20413 1.00863 0.99772 0.95094 1.20351 0.97909 0.92072 0.96539 1.18221 1.02777 0.94928 0.96248 1.20976 1.01522 0.90382 0.99643 1.20083 1.03552 0.96610 0.89516 1.17197 0.79144 0.81633 0.84748 1.90884 1.41595 1.83301 1.23267 1.45957 1.53498 1.11828 1.26401 1.21114 1.00954 0.82696 0.91259 0.88618 1.21775 1.03044 0.93194 0.98198 1.21399 0.99572 0.97418 0.96394 1.21846 0.98407 0.84127 0.91227 0.92644 1.86520 1.61242 1.41334 1.48244 1.22237 1.03564 0.94407 0.98597 1.21873 0.98853 0.98521 0.97403 1.41872 1.45556 1.11227 1.19718 1.18278 1.00028 0.84666 0.96403 1.19822 1.02295 0.94285 0.96017 0.77218 0.90485 1.17845 1.18785 0.85261 0.84871 0.82375 0.77078 0.90308 0.91030 0.90584 0.90409 0.77246 0.90554 0.91139 0.91546 0.90725 0.74551 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.39 12.73 -35.23 -0.45 -0.84 16 2 C -0.08 0.04 2.80 36.00 0.10 0.14 16 3 Si 0.69 -0.79 29.75 -169.99 -5.06 -5.85 16 4 C -0.04 -0.04 5.43 -104.57 -0.57 -0.61 16 5 C -0.14 -0.07 8.59 -39.97 -0.34 -0.41 16 6 C -0.05 -0.04 10.06 -39.53 -0.40 -0.44 16 7 C -0.12 -0.24 6.16 -106.93 -0.66 -0.90 16 8 C -0.10 -0.22 10.53 -39.15 -0.41 -0.63 16 9 C 0.01 0.02 6.97 -82.29 -0.57 -0.56 16 10 C 0.59 1.15 7.76 -12.69 -0.10 1.05 16 11 O -0.52 -2.87 16.50 5.23 0.09 -2.78 16 12 N -0.73 0.87 5.07 -55.00 -0.28 0.60 16 13 C 0.14 -0.13 2.46 -67.93 -0.17 -0.30 16 14 H 0.10 0.11 7.58 -51.93 -0.39 -0.29 16 15 C -0.12 0.32 5.39 -26.73 -0.14 0.17 16 16 C -0.11 0.12 5.57 -26.73 -0.15 -0.03 16 17 C 0.10 -0.09 3.47 -26.73 -0.09 -0.18 16 18 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 19 O -0.57 -0.30 13.32 -35.23 -0.47 -0.77 16 20 C -0.15 0.15 5.55 -26.73 -0.15 0.00 16 21 C -0.13 0.10 5.49 -26.73 -0.15 -0.05 16 22 N -0.58 0.25 6.07 -7.35 -0.04 0.21 16 23 C 0.12 0.17 7.25 -83.97 -0.61 -0.44 16 24 C -0.10 -0.12 9.61 -39.42 -0.38 -0.50 16 25 H 0.38 -1.22 8.74 45.56 0.40 -0.82 16 26 H 0.08 -0.17 7.96 -51.92 -0.41 -0.58 16 27 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 28 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 29 H 0.13 -0.19 4.82 -52.49 -0.25 -0.44 16 30 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 31 H 0.16 0.23 8.06 -52.49 -0.42 -0.19 16 32 H 0.40 -1.57 7.66 -40.82 -0.31 -1.88 16 33 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 34 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 36 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 37 H 0.38 -1.22 9.08 45.56 0.41 -0.81 16 38 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 40 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 41 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.42 -1.51 8.12 -40.82 -0.33 -1.84 16 43 H 0.13 -0.01 8.06 -52.49 -0.42 -0.43 16 LS Contribution 352.17 15.07 5.31 5.31 Total: 0.00 -9.39 352.17 -10.85 -20.25 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: -5.16 Total: -12.43 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -4.79 Total: -3.69 kcal Atomic # 7 Polarization: 1.13 SS G_CDS: -0.32 Total: 0.81 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.83 Total: -4.40 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: -5.06 Total: -5.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -9.39 -10.85 -20.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.423 kcal (2) G-P(sol) polarization free energy of solvation -9.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds