Wall clock time and date at job start Sat Mar 6 2021 15:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47150 * 2 1 4 4 C 1.50694 * 109.47536 * 239.99577 * 2 1 3 5 5 C 1.38894 * 119.67660 * 120.27871 * 4 2 1 6 6 C 1.36477 * 120.61618 * 180.28479 * 5 4 2 7 7 C 1.40058 * 119.82829 * 359.72209 * 6 5 4 8 8 C 1.41601 * 133.38090 * 180.02562 * 7 6 5 9 9 C 1.35864 * 107.72773 * 179.97438 * 8 7 6 10 10 C 1.47057 * 125.42774 * 180.02562 * 9 8 7 11 11 O 1.21651 * 119.99410 * 359.95887 * 10 9 8 12 12 N 1.34770 * 120.00356 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00088 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47367 * 34.99723 * 13 12 10 15 15 C 1.53000 * 109.47340 * 155.00092 * 13 12 10 16 16 C 1.52998 * 109.47291 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46872 * 299.99650 * 16 15 13 18 18 H 1.08998 * 109.47398 * 299.99680 * 17 16 15 19 19 O 1.42906 * 109.46862 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47051 * 60.00420 * 17 16 15 21 21 C 1.52998 * 109.46940 * 299.99539 * 20 17 16 22 22 N 1.38149 * 109.14813 * 359.97438 * 9 8 7 23 23 C 1.37492 * 108.79040 * 359.97438 * 22 9 8 24 24 C 1.37712 * 119.67423 * 300.00033 * 4 2 1 25 25 H 0.96699 * 114.00021 * 300.00633 * 1 2 3 26 26 H 1.09008 * 109.46730 * 119.99278 * 2 1 3 27 27 H 1.48499 * 109.99896 * 299.99755 * 3 2 1 28 28 H 1.48498 * 110.00132 * 61.31332 * 3 2 1 29 29 H 1.07999 * 119.69350 * 0.02562 * 5 4 2 30 30 H 1.07999 * 120.08454 * 179.74284 * 6 5 4 31 31 H 1.07994 * 126.13272 * 359.96292 * 8 7 6 32 32 H 0.96999 * 120.00016 * 359.97438 * 12 10 9 33 33 H 1.08999 * 109.47091 * 299.99570 * 15 13 12 34 34 H 1.09001 * 109.47192 * 59.99524 * 15 13 12 35 35 H 1.09001 * 109.47344 * 59.99675 * 16 15 13 36 36 H 1.09005 * 109.47312 * 179.97438 * 16 15 13 37 37 H 0.96695 * 113.99489 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47369 * 59.99850 * 20 17 16 39 39 H 1.08998 * 109.46808 * 180.02562 * 20 17 16 40 40 H 1.09001 * 109.47344 * 300.00326 * 21 20 17 41 41 H 1.08997 * 109.47477 * 180.02562 * 21 20 17 42 42 H 0.97000 * 125.60624 * 180.02562 * 22 9 8 43 43 H 1.08002 * 120.09919 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7343 -0.0307 -2.1372 6 6 3.1951 -0.6537 -3.2607 7 6 2.8618 -1.9926 -3.5012 8 6 3.1718 -2.9000 -4.5432 9 6 2.5714 -4.0837 -4.2532 10 6 2.6397 -5.2990 -5.0785 11 8 3.2736 -5.2941 -6.1168 12 7 1.9999 -6.4179 -4.6848 13 6 2.0685 -7.6286 -5.5067 14 1 3.0511 -7.6956 -5.9738 15 6 1.8382 -8.8575 -4.6248 16 6 1.9092 -10.1219 -5.4833 17 6 0.8314 -10.0632 -6.5677 18 1 -0.1510 -9.9962 -6.1003 19 8 0.8974 -11.2445 -7.3692 20 6 1.0617 -8.8344 -7.4496 21 6 0.9907 -7.5700 -6.5911 22 7 1.8873 -3.9643 -3.0589 23 6 2.0536 -2.6866 -2.5791 24 6 1.5947 -2.0290 -1.4415 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 0.8901 27 1 1.5615 2.4679 -1.2085 28 1 1.5878 2.4586 1.2241 29 1 2.9930 1.0017 -1.9538 30 1 3.8155 -0.1158 -3.9622 31 1 3.7767 -2.6888 -5.4125 32 1 1.4946 -6.4218 -3.8568 33 1 2.6058 -8.8991 -3.8520 34 1 0.8556 -8.7906 -4.1577 35 1 2.8917 -10.1891 -5.9507 36 1 1.7456 -10.9975 -4.8549 37 1 0.2413 -11.2753 -8.0789 38 1 2.0441 -8.9016 -7.9170 39 1 0.2936 -8.7924 -8.2218 40 1 0.0083 -7.5029 -6.1237 41 1 1.1543 -6.6945 -7.2194 42 1 1.3746 -4.6666 -2.6290 43 1 0.9732 -2.5502 -0.7284 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:09 Heat of formation + Delta-G solvation = -65.674536 kcal Electronic energy + Delta-G solvation = -25743.926143 eV Core-core repulsion = 21948.325467 eV Total energy + Delta-G solvation = -3795.600676 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.72860 -41.08088 -39.65776 -38.85240 -37.11752 -37.06505 -34.66896 -33.33079 -31.92964 -31.37435 -30.44552 -29.51845 -26.81749 -24.58105 -23.94035 -23.42054 -22.62083 -21.91229 -21.46135 -20.88796 -19.56412 -18.52988 -18.23918 -17.99937 -17.59826 -16.96083 -16.64347 -16.48926 -16.04703 -15.69707 -15.54847 -15.24053 -15.08362 -14.94860 -14.72782 -14.68665 -14.27969 -14.23099 -13.88996 -13.51867 -13.39924 -13.30463 -13.07578 -12.73622 -12.51812 -12.32617 -12.23165 -12.17007 -11.81440 -11.70646 -11.45670 -11.31898 -10.98543 -10.81725 -10.46367 -10.30634 -9.33972 -8.83485 -4.87290 -0.38723 0.51268 0.92102 1.33409 1.64033 1.71278 1.91600 2.00707 2.14682 2.72331 3.22870 3.39602 3.49821 3.58129 3.64727 3.66296 3.85857 3.96257 4.03575 4.05372 4.16250 4.21134 4.24414 4.29635 4.34433 4.38419 4.43455 4.46639 4.58489 4.62371 4.82804 4.87541 4.89026 4.96881 4.97683 5.04825 5.07491 5.18559 5.19401 5.29903 5.37977 5.38837 5.53371 5.56748 5.96374 6.22823 6.41621 6.61282 6.84157 6.91877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.082 4.082 3 Si 0.763 3.237 4 C -0.052 4.052 5 C -0.149 4.149 6 C -0.058 4.058 7 C -0.136 4.136 8 C -0.117 4.117 9 C 0.010 3.990 10 C 0.587 3.413 11 O -0.559 6.559 12 N -0.708 5.708 13 C 0.144 3.856 14 H 0.071 0.929 15 C -0.113 4.113 16 C -0.112 4.112 17 C 0.103 3.897 18 H 0.071 0.929 19 O -0.589 6.589 20 C -0.145 4.145 21 C -0.123 4.123 22 N -0.563 5.563 23 C 0.108 3.892 24 C -0.110 4.110 25 H 0.395 0.605 26 H 0.100 0.900 27 H -0.301 1.301 28 H -0.287 1.287 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.412 0.588 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.394 0.606 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.432 0.568 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 -0.778 5.704 6.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.191 4.191 3 Si 0.669 3.331 4 C -0.054 4.054 5 C -0.167 4.167 6 C -0.077 4.077 7 C -0.141 4.141 8 C -0.144 4.144 9 C -0.100 4.100 10 C 0.374 3.626 11 O -0.437 6.437 12 N -0.359 5.359 13 C 0.040 3.960 14 H 0.089 0.911 15 C -0.151 4.151 16 C -0.150 4.150 17 C 0.045 3.955 18 H 0.089 0.911 19 O -0.398 6.398 20 C -0.183 4.183 21 C -0.162 4.162 22 N -0.169 5.169 23 C -0.003 4.003 24 C -0.131 4.131 25 H 0.246 0.754 26 H 0.118 0.882 27 H -0.228 1.228 28 H -0.215 1.215 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.249 0.751 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.273 0.727 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.146 -0.607 4.847 5.017 hybrid contribution -2.005 -0.220 0.323 2.043 sum -3.151 -0.827 5.170 6.110 Atomic orbital electron populations 1.86544 1.18426 1.80694 1.51140 1.24973 0.84104 1.11659 0.98376 0.94042 0.90529 0.72277 0.76247 1.19223 0.97282 0.93133 0.95780 1.20646 1.00674 1.00486 0.94912 1.20613 0.98107 0.91894 0.97080 1.18439 1.03475 0.95640 0.96509 1.21097 1.02226 0.91100 1.00022 1.19969 1.03778 0.96181 0.90036 1.17284 0.78829 0.82311 0.84187 1.90863 1.43679 1.84036 1.25149 1.45808 1.52481 1.10846 1.26726 1.21095 0.99776 0.83432 0.91706 0.91089 1.21704 1.04523 0.91264 0.97605 1.21427 0.98822 0.98193 0.96587 1.21907 0.99099 0.83487 0.91055 0.91137 1.86484 1.62244 1.41957 1.49079 1.22184 1.02872 0.94479 0.98811 1.21812 0.99568 0.97631 0.97140 1.41753 1.45031 1.11219 1.18914 1.18421 1.00111 0.85188 0.96558 1.19990 1.02494 0.94501 0.96099 0.75418 0.88226 1.22837 1.21476 0.83780 0.83320 0.82696 0.75121 0.89587 0.88855 0.92137 0.90183 0.75625 0.92321 0.90275 0.89915 0.92997 0.72736 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.35 12.73 -148.98 -1.90 -2.25 16 2 C -0.08 0.16 2.80 71.23 0.20 0.36 16 3 Si 0.76 -2.06 29.75 68.60 2.04 -0.02 16 4 C -0.05 -0.08 5.43 -19.83 -0.11 -0.19 16 5 C -0.15 -0.14 8.59 22.02 0.19 0.05 16 6 C -0.06 -0.12 10.06 22.30 0.22 0.10 16 7 C -0.14 -0.67 6.16 -21.36 -0.13 -0.80 16 8 C -0.12 -0.68 10.53 22.55 0.24 -0.45 16 9 C 0.01 0.04 6.97 39.91 0.28 0.31 16 10 C 0.59 2.92 7.76 86.56 0.67 3.60 16 11 O -0.56 -7.48 16.50 -4.19 -0.07 -7.55 16 12 N -0.71 1.74 5.07 -446.15 -2.26 -0.52 16 13 C 0.14 -0.20 2.46 44.99 0.11 -0.09 16 14 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 15 C -0.11 0.68 5.39 30.59 0.16 0.85 16 16 C -0.11 0.26 5.57 30.59 0.17 0.43 16 17 C 0.10 -0.22 3.47 30.59 0.11 -0.11 16 18 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 19 O -0.59 -0.62 13.32 -148.98 -1.98 -2.61 16 20 C -0.15 0.22 5.55 30.59 0.17 0.38 16 21 C -0.12 0.14 5.49 30.60 0.17 0.31 16 22 N -0.56 0.64 6.07 -177.18 -1.08 -0.43 16 23 C 0.11 0.31 7.25 39.13 0.28 0.59 16 24 C -0.11 -0.19 9.61 22.37 0.22 0.03 16 25 H 0.40 -2.89 8.74 -74.06 -0.65 -3.53 16 26 H 0.10 -0.63 7.96 -2.38 -0.02 -0.65 16 27 H -0.30 -1.53 7.11 99.48 0.71 -0.82 16 28 H -0.29 -0.40 7.11 99.48 0.71 0.31 16 29 H 0.15 -0.45 4.82 -2.91 -0.01 -0.47 16 30 H 0.15 -0.33 8.06 -2.91 -0.02 -0.36 16 31 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.41 -3.79 7.66 -92.71 -0.71 -4.50 16 33 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 37 H 0.39 -2.58 9.08 -74.06 -0.67 -3.25 16 38 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 39 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.43 -3.60 8.12 -92.71 -0.75 -4.35 16 43 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -23.25 352.17 -3.96 -27.21 By element: Atomic # 1 Polarization: -17.55 SS G_CDS: -1.66 Total: -19.21 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 2.95 Total: 5.38 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -3.34 Total: -0.95 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -3.95 Total: -12.41 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.04 Total: -0.02 kcal Total: -23.25 -3.96 -27.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.462 kcal (2) G-P(sol) polarization free energy of solvation -23.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds