Wall clock time and date at job start Sat Mar 6 2021 15:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47360 * 2 1 4 4 C 1.50697 * 109.47319 * 120.00218 * 2 1 3 5 5 C 1.38324 * 119.87588 * 65.00098 * 4 2 1 6 6 C 1.38024 * 120.11544 * 180.02562 * 5 4 2 7 7 C 1.39330 * 119.88060 * 0.02562 * 6 5 4 8 8 C 1.48391 * 120.11919 * 180.02562 * 7 6 5 9 9 C 1.39316 * 120.12381 * 56.46526 * 8 7 6 10 10 C 1.50706 * 120.06074 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.46871 * 79.89518 * 10 9 8 12 12 O 1.21275 * 120.00256 * 5.79937 * 11 10 9 13 13 N 1.34782 * 119.99687 * 185.79637 * 11 10 9 14 14 C 1.46500 * 120.00051 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46735 * 34.99616 * 14 13 11 16 16 C 1.52991 * 109.47333 * 154.99978 * 14 13 11 17 17 C 1.53001 * 109.47356 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46668 * 299.99736 * 17 16 14 19 19 H 1.08994 * 109.47778 * 299.99983 * 18 17 16 20 20 O 1.42904 * 109.47024 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47051 * 60.00238 * 18 17 16 22 22 C 1.53000 * 109.46804 * 275.00153 * 14 13 11 23 23 C 1.38043 * 119.88077 * 179.72293 * 9 8 7 24 24 C 1.38301 * 120.11731 * 0.23430 * 23 9 8 25 25 C 1.38338 * 120.24390 * 0.04145 * 24 23 9 26 26 C 1.37995 * 120.12484 * 359.97438 * 25 24 23 27 27 C 1.39335 * 119.76043 * 0.26621 * 7 6 5 28 28 C 1.38023 * 119.87596 * 359.43708 * 27 7 6 29 29 H 0.96696 * 114.00089 * 299.99948 * 1 2 3 30 30 H 1.09003 * 109.47363 * 240.00344 * 2 1 3 31 31 H 1.48503 * 110.00467 * 178.68353 * 3 2 1 32 32 H 1.48504 * 110.00036 * 300.00043 * 3 2 1 33 33 H 1.07998 * 119.94062 * 0.02562 * 5 4 2 34 34 H 1.08007 * 120.05427 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.46833 * 319.90107 * 10 9 8 36 36 H 1.08996 * 109.47462 * 199.89868 * 10 9 8 37 37 H 0.96994 * 119.99771 * 0.02562 * 13 11 10 38 38 H 1.09004 * 109.47425 * 300.00060 * 16 14 13 39 39 H 1.09007 * 109.47239 * 59.99704 * 16 14 13 40 40 H 1.08993 * 109.47081 * 59.99643 * 17 16 14 41 41 H 1.09001 * 109.47503 * 180.02562 * 17 16 14 42 42 H 0.96694 * 114.00157 * 179.97438 * 20 18 17 43 43 H 1.09008 * 109.46959 * 59.99527 * 21 18 17 44 44 H 1.08995 * 109.47237 * 179.97438 * 21 18 17 45 45 H 1.08994 * 109.47477 * 299.99743 * 22 14 13 46 46 H 1.08998 * 109.47645 * 60.00203 * 22 14 13 47 47 H 1.08000 * 119.94044 * 180.25483 * 23 9 8 48 48 H 1.07995 * 119.87633 * 180.02562 * 24 23 9 49 49 H 1.07997 * 119.93794 * 179.97438 * 25 24 23 50 50 H 1.08001 * 120.06700 * 179.97438 * 26 25 24 51 51 H 1.08001 * 120.06454 * 179.72640 * 27 7 6 52 52 H 1.08000 * 119.94320 * 180.31282 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6831 -2.0611 1.3957 6 6 2.1405 -2.7167 2.5210 7 6 2.8528 -2.0152 3.4915 8 6 3.3475 -2.7148 4.7031 9 6 4.1745 -3.8290 4.5784 10 6 4.5696 -4.3268 3.2119 11 6 5.6924 -3.4780 2.6734 12 8 6.1997 -2.6279 3.3740 13 7 6.1330 -3.6638 1.4132 14 6 7.2248 -2.8391 0.8899 15 1 7.9319 -2.6218 1.6906 16 6 7.9409 -3.5932 -0.2322 17 6 9.0817 -2.7322 -0.7783 18 6 8.5138 -1.4214 -1.3264 19 1 7.8069 -1.6382 -2.1271 20 8 9.5793 -0.6169 -1.8359 21 6 7.7977 -0.6671 -0.2041 22 6 6.6565 -1.5285 0.3418 23 6 4.6364 -4.4726 5.7089 24 6 4.2758 -4.0160 6.9636 25 6 3.4502 -2.9135 7.0931 26 6 2.9824 -2.2628 5.9697 27 6 3.0947 -0.6534 3.3227 28 6 2.6381 -0.0092 2.1907 29 1 -0.3933 0.4417 0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 3.5346 1.7703 0.0321 32 1 1.5615 2.4679 -1.2085 33 1 1.1305 -2.6037 0.6430 34 1 1.9465 -3.7714 2.6489 35 1 3.7130 -4.2643 2.5408 36 1 4.8998 -5.3630 3.2841 37 1 5.7270 -4.3435 0.8529 38 1 8.3458 -4.5269 0.1582 39 1 7.2338 -3.8106 -1.0328 40 1 9.7886 -2.5153 0.0224 41 1 9.5916 -3.2693 -1.5781 42 1 9.2919 0.2313 -2.2008 43 1 8.5048 -0.4503 0.5967 44 1 7.3936 0.2669 -0.5944 45 1 5.9494 -1.7457 -0.4587 46 1 6.1464 -0.9912 1.1413 47 1 5.2809 -5.3339 5.6134 48 1 4.6397 -4.5221 7.8454 49 1 3.1713 -2.5614 8.0752 50 1 2.3376 -1.4024 6.0719 51 1 3.6425 -0.1040 4.0740 52 1 2.8293 1.0452 2.0563 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13158394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:13 Heat of formation + Delta-G solvation = -74.465460 kcal Electronic energy + Delta-G solvation = -34356.403822 eV Core-core repulsion = 30058.320335 eV Total energy + Delta-G solvation = -4298.083487 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.60186 -40.76681 -39.87002 -39.28942 -37.54701 -37.02176 -34.58117 -34.19618 -33.39672 -31.98641 -31.94839 -30.75012 -29.95555 -28.15675 -26.56153 -24.08988 -23.95267 -23.67518 -23.29099 -22.47907 -21.71072 -21.43618 -20.86167 -18.57811 -18.32318 -18.12066 -17.88433 -17.48808 -17.01674 -16.67869 -16.41055 -16.19354 -16.13115 -15.74362 -15.59565 -15.50490 -15.44413 -14.97934 -14.77422 -14.76549 -14.48918 -14.29169 -14.16797 -14.02716 -13.65822 -13.42440 -13.37667 -13.33112 -13.23762 -13.08725 -12.91018 -12.49424 -12.38965 -12.26697 -12.24775 -12.05705 -11.85896 -11.80330 -11.69085 -11.35664 -11.00098 -10.83125 -10.46909 -10.15932 -10.09409 -9.94838 -9.74016 -9.22303 -5.05096 -0.09625 0.37979 0.40817 0.61136 1.27540 1.58030 1.64546 1.89814 2.13871 2.62239 2.87338 3.21362 3.47079 3.52279 3.57240 3.63652 3.67167 3.75244 3.88694 3.93369 3.94406 3.97409 4.01151 4.07754 4.14006 4.18395 4.23841 4.30666 4.34321 4.35934 4.37089 4.46306 4.52368 4.52895 4.58461 4.61237 4.69273 4.81510 4.86018 4.89756 4.93346 4.98021 5.01294 5.02179 5.04757 5.10073 5.17957 5.26926 5.33991 5.41321 5.47385 5.48390 5.53141 5.58434 5.65744 5.93031 6.05401 6.54433 6.74194 6.78075 7.27069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.063 4.063 3 Si 0.755 3.245 4 C -0.120 4.120 5 C -0.091 4.091 6 C -0.114 4.114 7 C -0.040 4.040 8 C -0.050 4.050 9 C -0.064 4.064 10 C -0.109 4.109 11 C 0.517 3.483 12 O -0.572 6.572 13 N -0.717 5.717 14 C 0.148 3.852 15 H 0.061 0.939 16 C -0.112 4.112 17 C -0.111 4.111 18 C 0.104 3.896 19 H 0.069 0.931 20 O -0.588 6.588 21 C -0.145 4.145 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.108 4.108 28 C -0.115 4.115 29 H 0.395 0.605 30 H 0.111 0.889 31 H -0.290 1.290 32 H -0.295 1.295 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.416 0.584 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.393 0.607 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.131 0.869 51 H 0.120 0.880 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 -2.971 -0.904 4.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.174 4.174 3 Si 0.662 3.338 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.131 4.131 7 C -0.040 4.040 8 C -0.050 4.050 9 C -0.065 4.065 10 C -0.148 4.148 11 C 0.304 3.696 12 O -0.451 6.451 13 N -0.369 5.369 14 C 0.043 3.957 15 H 0.079 0.921 16 C -0.150 4.150 17 C -0.150 4.150 18 C 0.046 3.954 19 H 0.087 0.913 20 O -0.396 6.396 21 C -0.184 4.184 22 C -0.157 4.157 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.132 4.132 29 H 0.245 0.755 30 H 0.128 0.872 31 H -0.217 1.217 32 H -0.223 1.223 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.252 0.748 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.243 0.757 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.158 0.842 50 H 0.149 0.851 51 H 0.138 0.862 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.154 -2.595 -1.173 3.571 hybrid contribution -0.144 0.030 -0.256 0.296 sum -2.298 -2.565 -1.429 3.729 Atomic orbital electron populations 1.86467 1.17018 1.82088 1.50484 1.24996 0.85339 1.09830 0.97256 0.93798 0.78153 0.76739 0.85127 1.20395 0.99684 0.95226 0.96734 1.21067 0.98486 0.93735 0.97648 1.21378 0.97818 1.00590 0.93338 1.18848 0.97909 0.93321 0.93971 1.18741 0.98310 0.95259 0.92716 1.19454 0.97149 0.95229 0.94661 1.20931 0.98115 1.01011 0.94778 1.20865 0.83726 0.83487 0.81476 1.90721 1.59244 1.36105 1.58988 1.45942 1.37466 1.39533 1.13989 1.20882 0.88367 0.90452 0.95974 0.92085 1.21693 0.97450 0.98502 0.97376 1.21430 0.98069 0.94426 1.01037 1.21892 0.88289 0.90885 0.94346 0.91274 1.86482 1.36307 1.35038 1.81776 1.22194 0.97754 0.99233 0.99188 1.21757 0.97841 0.95783 1.00289 1.21229 0.99671 1.00694 0.92112 1.21475 0.97908 0.96955 0.98025 1.21374 0.97783 0.96042 0.99228 1.21377 1.00356 1.00294 0.91606 1.21220 0.99455 0.93962 0.98007 1.21035 0.98539 0.99769 0.93902 0.75530 0.87165 1.21741 1.22336 0.84513 0.84031 0.85894 0.85277 0.74752 0.89552 0.89058 0.92328 0.90155 0.75739 0.92534 0.90957 0.90468 0.93647 0.84517 0.84288 0.84241 0.85121 0.86221 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.38 12.83 -148.98 -1.91 -1.54 16 2 C -0.06 0.08 2.80 71.24 0.20 0.27 16 3 Si 0.75 -0.94 29.79 68.60 2.04 1.10 16 4 C -0.12 0.04 5.36 -19.82 -0.11 -0.07 16 5 C -0.09 0.08 9.67 22.24 0.21 0.29 16 6 C -0.11 0.05 7.84 22.48 0.18 0.23 16 7 C -0.04 -0.12 4.73 -20.05 -0.09 -0.22 16 8 C -0.05 -0.23 5.38 -20.04 -0.11 -0.34 16 9 C -0.06 -0.21 4.39 -19.65 -0.09 -0.30 16 10 C -0.11 0.19 5.30 29.10 0.15 0.35 16 11 C 0.52 1.86 7.56 87.66 0.66 2.52 16 12 O -0.57 -7.64 15.70 -3.01 -0.05 -7.69 16 13 N -0.72 1.37 5.08 -442.54 -2.25 -0.87 16 14 C 0.15 0.07 2.45 44.99 0.11 0.18 16 15 H 0.06 0.41 7.58 -2.39 -0.02 0.40 16 16 C -0.11 0.47 5.39 30.59 0.16 0.63 16 17 C -0.11 0.05 5.57 30.60 0.17 0.22 16 18 C 0.10 0.00 3.47 30.60 0.11 0.11 16 19 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 20 O -0.59 -1.63 13.32 -148.98 -1.98 -3.61 16 21 C -0.15 -0.19 5.55 30.61 0.17 -0.02 16 22 C -0.12 -0.18 5.50 30.61 0.17 -0.02 16 23 C -0.12 -0.33 9.66 22.24 0.21 -0.11 16 24 C -0.13 -0.30 10.04 22.31 0.22 -0.08 16 25 C -0.13 -0.34 10.03 22.24 0.22 -0.12 16 26 C -0.12 -0.47 9.62 22.48 0.22 -0.26 16 27 C -0.11 -0.39 9.62 22.48 0.22 -0.17 16 28 C -0.12 -0.08 8.65 22.24 0.19 0.11 16 29 H 0.39 -3.20 8.70 -74.06 -0.64 -3.84 16 30 H 0.11 -0.10 7.96 -2.39 -0.02 -0.12 16 31 H -0.29 -1.22 7.11 99.48 0.71 -0.52 16 32 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 33 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 34 H 0.14 -0.57 7.07 -2.91 -0.02 -0.59 16 35 H 0.12 -0.65 4.86 -2.39 -0.01 -0.66 16 36 H 0.13 -0.92 8.01 -2.39 -0.02 -0.94 16 37 H 0.42 -3.56 8.60 -92.71 -0.80 -4.36 16 38 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 40 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.08 -0.08 8.14 -2.39 -0.02 -0.09 16 42 H 0.39 -1.85 9.08 -74.06 -0.67 -2.52 16 43 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.14 -0.16 8.04 -2.91 -0.02 -0.19 16 48 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 49 H 0.14 -0.19 8.06 -2.91 -0.02 -0.22 16 50 H 0.13 0.19 8.06 -2.91 -0.02 0.16 16 51 H 0.12 0.51 8.06 -2.91 -0.02 0.49 16 52 H 0.14 -0.35 4.89 -2.91 -0.01 -0.36 16 Total: 0.00 -23.14 417.86 -2.08 -25.21 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -1.12 Total: -15.83 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 3.19 Total: 3.23 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -2.25 Total: -0.87 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -3.94 Total: -12.84 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: 2.04 Total: 1.10 kcal Total: -23.14 -2.08 -25.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13158394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.251 kcal (2) G-P(sol) polarization free energy of solvation -23.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds