Wall clock time and date at job start Sat Mar 6 2021 15:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86308 * 109.47341 * 2 1 4 4 C 1.50705 * 109.46918 * 119.99772 * 2 1 3 5 5 C 1.34703 * 125.66646 * 64.99746 * 4 2 1 6 6 C 1.40970 * 107.02930 * 179.97438 * 5 4 2 7 7 C 1.35930 * 106.74021 * 0.02562 * 6 5 4 8 8 C 1.47821 * 125.92439 * 179.97438 * 7 6 5 9 9 C 1.39796 * 120.00346 * 0.02562 * 8 7 6 10 10 C 1.37810 * 120.24871 * 180.02562 * 9 8 7 11 11 C 1.38784 * 120.24060 * 359.97438 * 10 9 8 12 12 O 1.35651 * 119.99918 * 179.97438 * 11 10 9 13 13 C 1.40245 * 119.99428 * 0.02562 * 11 10 9 14 14 C 1.47566 * 120.11668 * 180.02562 * 13 11 10 15 15 O 1.21588 * 120.00388 * 359.97438 * 14 13 11 16 16 N 1.34779 * 119.99849 * 180.02562 * 14 13 11 17 17 C 1.46506 * 120.00145 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.47326 * 34.98906 * 17 16 14 19 19 C 1.52995 * 109.47201 * 154.99454 * 17 16 14 20 20 C 1.52996 * 109.47038 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47665 * 300.00391 * 20 19 17 22 22 H 1.08999 * 109.46954 * 299.99779 * 21 20 19 23 23 O 1.42896 * 109.47378 * 179.97438 * 21 20 19 24 24 C 1.52998 * 109.47037 * 59.99389 * 21 20 19 25 25 C 1.52996 * 109.47547 * 300.00416 * 24 21 20 26 26 C 1.39215 * 119.99691 * 179.97438 * 8 7 6 27 27 O 1.34352 * 125.66321 * 245.30786 * 4 2 1 28 28 H 0.96702 * 114.00015 * 60.00210 * 1 2 3 29 29 H 1.09000 * 109.47314 * 239.99811 * 2 1 3 30 30 H 1.48497 * 109.99851 * 59.99467 * 3 2 1 31 31 H 1.48498 * 109.99974 * 181.31637 * 3 2 1 32 32 H 1.07999 * 126.47999 * 0.04395 * 5 4 2 33 33 H 1.08002 * 126.62517 * 179.97438 * 6 5 4 34 34 H 1.08009 * 119.87952 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.88201 * 179.97438 * 10 9 8 36 36 H 0.96700 * 113.99544 * 90.00140 * 12 11 10 37 37 H 0.97002 * 119.99912 * 359.97438 * 16 14 13 38 38 H 1.08998 * 109.47183 * 299.99651 * 19 17 16 39 39 H 1.08999 * 109.47110 * 59.99837 * 19 17 16 40 40 H 1.09010 * 109.47102 * 59.99968 * 20 19 17 41 41 H 1.09004 * 109.47434 * 179.97438 * 20 19 17 42 42 H 0.96705 * 114.00373 * 179.97438 * 23 21 20 43 43 H 1.09006 * 109.47268 * 60.00403 * 24 21 20 44 44 H 1.09002 * 109.47227 * 179.97438 * 24 21 20 45 45 H 1.08999 * 109.46972 * 299.99933 * 25 24 21 46 46 H 1.09001 * 109.47093 * 180.02562 * 25 24 21 47 47 H 1.07997 * 120.12125 * 359.74080 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.7569 -2.0166 1.5095 6 6 2.3822 -2.2611 2.7491 7 6 2.9083 -1.0778 3.1623 8 6 3.6587 -0.8529 4.4159 9 6 3.8805 -1.9146 5.2979 10 6 4.5789 -1.7105 6.4683 11 6 5.0676 -0.4495 6.7797 12 8 5.7540 -0.2540 7.9333 13 6 4.8510 0.6228 5.9022 14 6 5.3700 1.9646 6.2304 15 8 5.9863 2.1423 7.2634 16 7 5.1599 2.9936 5.3856 17 6 5.6756 4.3257 5.7111 18 1 6.6293 4.2293 6.2299 19 6 5.8749 5.1246 4.4216 20 6 6.4128 6.5159 4.7617 21 6 5.4130 7.2432 5.6629 22 1 4.4593 7.3393 5.1440 23 8 5.9158 8.5424 5.9809 24 6 5.2137 6.4442 6.9523 25 6 4.6757 5.0529 6.6124 26 6 4.1453 0.4160 4.7177 27 8 2.6222 -0.1447 2.2343 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5614 2.4679 1.2084 31 1 3.5346 1.7703 -0.0321 32 1 1.2375 -2.7400 0.8984 33 1 2.4326 -3.2058 3.2701 34 1 3.5024 -2.8984 5.0616 35 1 4.7465 -2.5349 7.1456 36 1 6.7082 -0.3870 7.8505 37 1 4.6679 2.8520 4.5617 38 1 6.5870 4.6063 3.7795 39 1 4.9211 5.2210 3.9029 40 1 7.3666 6.4198 5.2807 41 1 6.5553 7.0850 3.8429 42 1 5.3318 9.0616 6.5505 43 1 6.1675 6.3481 7.4713 44 1 4.5017 6.9626 7.5946 45 1 3.7219 5.1490 6.0935 46 1 4.5333 4.4839 7.5311 47 1 3.9794 1.2365 4.0353 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13259648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:17 Heat of formation + Delta-G solvation = -119.345192 kcal Electronic energy + Delta-G solvation = -32106.449369 eV Core-core repulsion = 27608.356745 eV Total energy + Delta-G solvation = -4498.092624 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.83037 -41.79899 -40.48212 -39.32808 -38.11844 -37.78256 -37.02339 -34.79859 -34.28921 -32.92640 -32.52218 -31.98500 -30.21001 -29.35924 -26.40071 -25.49617 -23.98475 -23.81682 -23.32540 -22.69296 -21.69638 -21.46094 -21.01309 -19.73675 -19.08505 -18.66195 -18.27597 -17.91819 -17.67916 -17.16416 -16.82116 -16.64765 -16.38064 -16.20613 -15.84367 -15.79318 -15.58305 -15.52460 -14.84838 -14.74066 -14.57007 -14.40589 -14.27658 -14.19061 -13.96876 -13.65162 -13.46397 -13.37082 -13.26069 -13.21025 -13.07358 -12.69111 -12.54615 -12.28979 -12.19708 -11.99445 -11.85768 -11.38566 -11.18044 -11.03826 -10.84317 -10.66170 -10.44523 -10.38308 -10.19293 -9.01610 -5.08288 -0.67128 -0.33949 0.64540 1.15937 1.34840 1.50801 1.63718 1.75328 1.87323 1.98233 2.51230 3.00145 3.11898 3.18517 3.35403 3.45469 3.54530 3.60571 3.71802 3.74061 3.91172 3.91711 3.94129 4.01134 4.08202 4.11285 4.18334 4.24548 4.29582 4.31915 4.37916 4.51937 4.54276 4.56676 4.69672 4.76906 4.78726 4.83662 4.90492 4.91406 4.99106 5.01339 5.03456 5.09721 5.14530 5.20437 5.33196 5.35549 5.40815 5.87582 6.27007 6.64191 6.81052 6.83037 6.98432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.041 4.041 3 Si 0.798 3.202 4 C -0.032 4.032 5 C -0.175 4.175 6 C -0.185 4.185 7 C 0.014 3.986 8 C -0.044 4.044 9 C -0.042 4.042 10 C -0.142 4.142 11 C 0.166 3.834 12 O -0.493 6.493 13 C -0.179 4.179 14 C 0.557 3.443 15 O -0.554 6.554 16 N -0.716 5.716 17 C 0.145 3.855 18 H 0.072 0.928 19 C -0.116 4.116 20 C -0.110 4.110 21 C 0.104 3.896 22 H 0.069 0.931 23 O -0.587 6.587 24 C -0.143 4.143 25 C -0.123 4.123 26 C -0.057 4.057 27 O -0.193 6.193 28 H 0.413 0.587 29 H 0.124 0.876 30 H -0.302 1.302 31 H -0.289 1.289 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.411 0.589 37 H 0.408 0.592 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.394 0.606 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 -2.048 -8.354 9.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.150 4.150 3 Si 0.703 3.297 4 C -0.081 4.081 5 C -0.194 4.194 6 C -0.203 4.203 7 C -0.035 4.035 8 C -0.044 4.044 9 C -0.060 4.060 10 C -0.160 4.160 11 C 0.120 3.880 12 O -0.306 6.306 13 C -0.183 4.183 14 C 0.345 3.655 15 O -0.433 6.433 16 N -0.368 5.368 17 C 0.041 3.959 18 H 0.090 0.910 19 C -0.154 4.154 20 C -0.148 4.148 21 C 0.045 3.955 22 H 0.087 0.913 23 O -0.395 6.395 24 C -0.182 4.182 25 C -0.161 4.161 26 C -0.076 4.076 27 O -0.092 6.092 28 H 0.266 0.734 29 H 0.142 0.858 30 H -0.230 1.230 31 H -0.216 1.216 32 H 0.189 0.811 33 H 0.200 0.800 34 H 0.187 0.813 35 H 0.187 0.813 36 H 0.272 0.728 37 H 0.245 0.755 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.244 0.756 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.137 -1.398 -6.796 7.260 hybrid contribution -0.158 -0.526 0.412 0.687 sum -2.295 -1.924 -6.384 7.051 Atomic orbital electron populations 1.86416 1.16241 1.82589 1.52055 1.23998 0.86416 1.11964 0.92618 0.94336 0.77266 0.73991 0.84083 1.22108 1.00917 0.93517 0.91598 1.21868 1.03377 0.95870 0.98308 1.22231 1.01613 0.99017 0.97472 1.20579 1.04138 0.87902 0.90891 1.17752 1.00431 0.94589 0.91650 1.21443 0.94147 0.99169 0.91270 1.21620 1.00038 0.96502 0.97888 1.18870 0.93510 0.91369 0.84294 1.84707 1.25127 1.92434 1.28356 1.20268 1.06447 0.94451 0.97131 1.18255 0.79291 0.84630 0.83283 1.90805 1.41829 1.84882 1.25753 1.45972 1.57712 1.08764 1.24351 1.21055 0.97310 0.80732 0.96818 0.91013 1.21717 1.03348 0.94592 0.95699 1.21406 0.98629 0.94568 1.00175 1.21869 0.96982 0.82346 0.94263 0.91297 1.86478 1.51868 1.28081 1.73072 1.22176 1.01953 0.95459 0.98570 1.21800 0.99211 0.95586 0.99529 1.21312 0.94486 0.97103 0.94697 1.83927 1.59123 1.38887 1.27244 0.73404 0.85847 1.22977 1.21623 0.81094 0.80043 0.81301 0.81297 0.72779 0.75540 0.89755 0.89509 0.91899 0.90014 0.75565 0.92165 0.90184 0.90446 0.93232 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.62 12.86 -148.98 -1.92 -0.29 16 2 C -0.04 0.11 2.97 71.24 0.21 0.32 16 3 Si 0.80 -2.73 32.11 68.60 2.20 -0.53 16 4 C -0.03 -0.14 6.24 24.88 0.16 0.01 16 5 C -0.18 -0.46 10.78 22.13 0.24 -0.22 16 6 C -0.18 -0.29 10.26 22.40 0.23 -0.06 16 7 C 0.01 0.06 7.03 24.27 0.17 0.24 16 8 C -0.04 -0.12 5.87 -20.13 -0.12 -0.24 16 9 C -0.04 0.07 9.54 22.55 0.22 0.28 16 10 C -0.14 0.10 9.96 22.30 0.22 0.32 16 11 C 0.17 0.82 6.72 22.89 0.15 0.97 16 12 O -0.49 -3.26 11.55 -68.67 -0.79 -4.05 16 13 C -0.18 -1.09 5.88 -20.04 -0.12 -1.21 16 14 C 0.56 5.02 7.73 86.70 0.67 5.69 16 15 O -0.55 -8.76 14.81 16.99 0.25 -8.51 16 16 N -0.72 -2.41 5.03 -445.67 -2.24 -4.65 16 17 C 0.14 0.41 2.45 44.99 0.11 0.53 16 18 H 0.07 0.54 7.58 -2.39 -0.02 0.52 16 19 C -0.12 0.21 5.39 30.59 0.16 0.38 16 20 C -0.11 -0.02 5.57 30.59 0.17 0.15 16 21 C 0.10 0.02 3.47 30.59 0.11 0.13 16 22 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 23 O -0.59 -1.44 13.32 -148.98 -1.98 -3.43 16 24 C -0.14 -0.16 5.54 30.59 0.17 0.01 16 25 C -0.12 -0.35 5.49 30.59 0.17 -0.18 16 26 C -0.06 -0.21 9.20 22.79 0.21 0.00 16 27 O -0.19 -1.39 8.80 -6.59 -0.06 -1.45 16 28 H 0.41 -5.92 8.74 -74.06 -0.65 -6.57 16 29 H 0.12 -1.07 7.96 -2.39 -0.02 -1.09 16 30 H -0.30 -1.59 7.11 99.48 0.71 -0.89 16 31 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 32 H 0.17 -0.24 8.06 -2.91 -0.02 -0.26 16 33 H 0.18 -0.87 7.24 -2.91 -0.02 -0.89 16 34 H 0.17 -1.32 6.96 -2.91 -0.02 -1.34 16 35 H 0.17 -0.94 8.06 -2.91 -0.02 -0.96 16 36 H 0.41 -0.30 9.06 -74.06 -0.67 -0.97 16 37 H 0.41 -0.38 6.63 -92.71 -0.61 -0.99 16 38 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 41 H 0.08 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.39 -2.09 9.08 -74.05 -0.67 -2.76 16 43 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.14 0.19 6.24 -2.91 -0.02 0.18 16 Total: 0.00 -29.12 391.66 -2.92 -32.03 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -1.51 Total: -16.24 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 3.13 Total: 7.11 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -2.24 Total: -4.65 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -4.50 Total: -17.73 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.20 Total: -0.53 kcal Total: -29.12 -2.92 -32.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13259648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.313 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds