Wall clock time and date at job start Sat Mar 6 2021 15:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86307 * 109.47091 * 2 1 4 4 C 1.50695 * 109.47645 * 119.99554 * 2 1 3 5 5 C 1.38591 * 120.31889 * 65.00368 * 4 2 1 6 6 C 1.38633 * 118.48737 * 180.02562 * 5 4 2 7 7 C 1.39268 * 119.06016 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72158 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00005 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00070 * 180.02562 * 8 7 6 11 11 C 1.46492 * 119.99930 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47696 * 34.99761 * 11 10 8 13 13 C 1.53002 * 109.47204 * 155.00105 * 11 10 8 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 17 17 O 1.42895 * 109.47503 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 19 19 C 1.52997 * 109.47244 * 274.99857 * 11 10 8 20 20 N 1.32746 * 120.55652 * 0.27658 * 7 6 5 21 21 C 1.31500 * 121.63966 * 359.43572 * 20 7 6 22 22 H 0.96700 * 114.00607 * 59.99563 * 1 2 3 23 23 H 1.09001 * 109.47227 * 240.00216 * 2 1 3 24 24 H 1.48509 * 109.99802 * 298.68513 * 3 2 1 25 25 H 1.48500 * 110.00107 * 59.99545 * 3 2 1 26 26 H 1.08000 * 120.75442 * 359.97438 * 5 4 2 27 27 H 1.08000 * 120.46489 * 180.02562 * 6 5 4 28 28 H 0.96998 * 119.99716 * 359.97438 * 10 8 7 29 29 H 1.08992 * 109.47063 * 59.99836 * 13 11 10 30 30 H 1.09004 * 109.46733 * 299.99549 * 13 11 10 31 31 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 32 32 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 33 33 H 0.96698 * 114.00355 * 180.02562 * 17 15 14 34 34 H 1.09000 * 109.47486 * 180.02562 * 18 15 14 35 35 H 1.09002 * 109.46716 * 60.00091 * 18 15 14 36 36 H 1.09002 * 109.47153 * 300.00242 * 19 11 10 37 37 H 1.09001 * 109.47289 * 60.00326 * 19 11 10 38 38 H 1.08000 * 119.54694 * 180.31548 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.6880 -2.0634 1.4056 6 6 2.1672 -2.6784 2.5519 7 6 2.8730 -1.9195 3.4822 8 6 3.3913 -2.5618 4.7127 9 8 3.2002 -3.7461 4.9066 10 7 4.0746 -1.8326 5.6170 11 6 4.5875 -2.4678 6.8334 12 1 4.8958 -3.4887 6.6079 13 6 5.7882 -1.6758 7.3549 14 6 6.3243 -2.3396 8.6249 15 6 5.2267 -2.3625 9.6906 16 1 4.9183 -1.3417 9.9165 17 8 5.7274 -2.9819 10.8770 18 6 4.0259 -3.1543 9.1692 19 6 3.4897 -2.4901 7.8988 20 7 3.0802 -0.6242 3.2786 21 6 2.6417 -0.0170 2.1978 22 1 -0.3934 0.4417 -0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5877 2.4586 -1.2243 25 1 1.5614 2.4680 1.2084 26 1 1.1369 -2.6256 0.6663 27 1 1.9963 -3.7314 2.7206 28 1 4.2275 -0.8873 5.4620 29 1 5.4799 -0.6550 7.5804 30 1 6.5704 -1.6600 6.5959 31 1 6.6327 -3.3604 8.3990 32 1 7.1794 -1.7751 8.9968 33 1 5.0835 -3.0313 11.5967 34 1 3.2438 -3.1703 9.9282 35 1 4.3343 -4.1751 8.9432 36 1 3.1814 -1.4692 8.1243 37 1 2.6342 -3.0543 7.5273 38 1 2.8338 1.0374 2.0641 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:26 Heat of formation + Delta-G solvation = -87.866195 kcal Electronic energy + Delta-G solvation = -21448.703057 eV Core-core repulsion = 18064.129979 eV Total energy + Delta-G solvation = -3384.573079 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93869 -40.75997 -39.50356 -37.96222 -37.04481 -34.75162 -33.73895 -33.03094 -31.89751 -29.70228 -27.57675 -25.03736 -24.16019 -23.87826 -22.86468 -21.69370 -21.12302 -19.26901 -18.66928 -18.22116 -18.20140 -17.24242 -16.85252 -16.57508 -16.32597 -15.87590 -15.54012 -15.49115 -15.18237 -14.96418 -14.53874 -14.33963 -14.16614 -14.02666 -13.94744 -13.37097 -13.26954 -13.03198 -12.54517 -12.49024 -12.20515 -12.11164 -11.78263 -11.48744 -11.29695 -11.08100 -10.84466 -10.76592 -10.53598 -10.35415 -10.09783 -4.92963 -0.61384 0.06593 1.23627 1.51122 1.60166 1.89910 1.94835 2.61251 2.90008 3.25897 3.28158 3.55942 3.62087 3.66627 3.69300 3.78440 3.88618 4.00101 4.08549 4.16875 4.19760 4.27767 4.36954 4.37824 4.41314 4.56747 4.63489 4.82394 4.86759 4.94234 4.98101 4.99634 5.07563 5.10257 5.22261 5.27971 5.35758 5.41969 6.25147 6.54133 6.59783 6.86526 7.02098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.082 4.082 3 Si 0.762 3.238 4 C -0.104 4.104 5 C -0.054 4.054 6 C -0.116 4.116 7 C 0.061 3.939 8 C 0.570 3.430 9 O -0.566 6.566 10 N -0.695 5.695 11 C 0.141 3.859 12 H 0.071 0.929 13 C -0.113 4.113 14 C -0.111 4.111 15 C 0.103 3.897 16 H 0.070 0.930 17 O -0.588 6.588 18 C -0.144 4.144 19 C -0.122 4.122 20 N -0.458 5.458 21 C 0.099 3.901 22 H 0.400 0.600 23 H 0.109 0.891 24 H -0.282 1.282 25 H -0.291 1.291 26 H 0.163 0.837 27 H 0.150 0.850 28 H 0.420 0.580 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.394 0.606 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 4.753 -3.548 6.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.192 4.192 3 Si 0.666 3.334 4 C -0.106 4.106 5 C -0.080 4.080 6 C -0.137 4.137 7 C -0.076 4.076 8 C 0.355 3.645 9 O -0.445 6.445 10 N -0.346 5.346 11 C 0.037 3.963 12 H 0.089 0.911 13 C -0.151 4.151 14 C -0.149 4.149 15 C 0.044 3.956 16 H 0.088 0.912 17 O -0.397 6.397 18 C -0.182 4.182 19 C -0.161 4.161 20 N -0.169 5.169 21 C -0.060 4.060 22 H 0.251 0.749 23 H 0.127 0.873 24 H -0.208 1.208 25 H -0.218 1.218 26 H 0.181 0.819 27 H 0.168 0.832 28 H 0.258 0.742 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.244 0.756 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.833 4.831 -2.544 5.760 hybrid contribution -2.293 -0.428 -0.856 2.484 sum -0.460 4.403 -3.400 5.582 Atomic orbital electron populations 1.86533 1.17941 1.80842 1.51449 1.24922 0.84523 1.12077 0.97632 0.94163 0.90112 0.71870 0.77221 1.20789 0.97914 0.94937 0.96940 1.21762 0.95376 0.94199 0.96631 1.22286 0.95546 1.02358 0.93491 1.21095 0.99771 0.90871 0.95847 1.18083 0.78055 0.85615 0.82707 1.90787 1.59277 1.16376 1.78026 1.45850 1.54344 1.14254 1.20103 1.21125 0.94147 0.97731 0.83282 0.91058 1.21696 0.96354 0.99951 0.97103 1.21420 0.98089 1.01833 0.93533 1.21897 0.93016 0.95562 0.85080 0.91217 1.86479 1.44567 1.83308 1.25304 1.22187 0.98520 0.99971 0.97519 1.21816 0.97760 1.01912 0.94624 1.67513 1.18735 1.08992 1.21668 1.22986 0.94213 1.00720 0.88118 0.74852 0.87318 1.20823 1.21846 0.81927 0.83216 0.74195 0.89144 0.89653 0.92015 0.90122 0.75631 0.90229 0.92204 0.90172 0.93080 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.13 12.82 -148.98 -1.91 -0.78 16 2 C -0.08 0.42 2.81 71.23 0.20 0.62 16 3 Si 0.76 -4.72 29.87 68.60 2.05 -2.67 16 4 C -0.10 0.09 5.40 -19.70 -0.11 -0.02 16 5 C -0.05 -0.01 9.83 22.45 0.22 0.21 16 6 C -0.12 -0.44 9.63 22.61 0.22 -0.22 16 7 C 0.06 0.35 6.75 41.89 0.28 0.63 16 8 C 0.57 4.59 7.78 86.88 0.68 5.27 16 9 O -0.57 -8.22 15.99 -3.76 -0.06 -8.28 16 10 N -0.70 -1.73 5.07 -445.11 -2.26 -3.99 16 11 C 0.14 0.23 2.45 44.99 0.11 0.34 16 12 H 0.07 0.45 7.58 -2.39 -0.02 0.43 16 13 C -0.11 0.34 5.39 30.60 0.16 0.51 16 14 C -0.11 0.06 5.57 30.59 0.17 0.23 16 15 C 0.10 -0.06 3.47 30.59 0.11 0.05 16 16 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 17 O -0.59 -1.19 13.32 -148.98 -1.98 -3.17 16 18 C -0.14 0.00 5.55 30.61 0.17 0.17 16 19 C -0.12 -0.16 5.50 30.61 0.17 0.01 16 20 N -0.46 -1.47 9.54 -184.91 -1.76 -3.23 16 21 C 0.10 -0.01 9.84 84.83 0.83 0.82 16 22 H 0.40 -3.98 8.74 -74.06 -0.65 -4.63 16 23 H 0.11 -1.06 7.96 -2.39 -0.02 -1.08 16 24 H -0.28 0.50 7.11 99.48 0.71 1.20 16 25 H -0.29 -0.22 7.05 99.48 0.70 0.48 16 26 H 0.16 -0.62 8.06 -2.91 -0.02 -0.64 16 27 H 0.15 0.55 7.64 -2.91 -0.02 0.52 16 28 H 0.42 -0.48 7.93 -92.71 -0.74 -1.22 16 29 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.39 -2.25 9.08 -74.06 -0.67 -2.93 16 34 H 0.08 -0.17 8.14 -2.39 -0.02 -0.18 16 35 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.18 -0.92 4.88 -2.91 -0.01 -0.93 16 Total: 0.00 -19.64 315.89 -3.63 -23.27 By element: Atomic # 1 Polarization: -8.84 SS G_CDS: -0.92 Total: -9.76 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 3.22 Total: 8.61 kcal Atomic # 7 Polarization: -3.20 SS G_CDS: -4.02 Total: -7.22 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -3.95 Total: -12.23 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 2.05 Total: -2.67 kcal Total: -19.64 -3.63 -23.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.599 kcal (2) G-P(sol) polarization free energy of solvation -19.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds