Wall clock time and date at job start Sat Mar 6 2021 15:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34657 * 124.85076 * 2 1 4 4 C 1.36768 * 108.39686 * 180.26087 * 3 2 1 5 5 C 1.47265 * 126.94308 * 179.69666 * 4 3 2 6 6 O 1.21626 * 119.99891 * 180.02562 * 5 4 3 7 7 N 1.34770 * 119.99819 * 0.02562 * 5 4 3 8 8 C 1.46499 * 120.00106 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.47253 * 34.99003 * 8 7 5 10 10 C 1.53000 * 109.47619 * 154.99862 * 8 7 5 11 11 C 1.52995 * 109.47078 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47212 * 299.99642 * 11 10 8 13 13 H 1.08996 * 109.47518 * 300.00381 * 12 11 10 14 14 O 1.42901 * 109.47109 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46806 * 60.00192 * 12 11 10 16 16 C 1.52998 * 109.47399 * 300.00052 * 15 12 11 17 17 C 1.46690 * 106.11411 * 359.59634 * 4 3 2 18 18 C 1.34482 * 106.33151 * 0.40025 * 17 4 3 19 19 C 1.50708 * 125.57220 * 179.75831 * 18 17 4 20 20 O 1.42904 * 109.47164 * 149.99653 * 19 18 17 21 21 Si 1.86304 * 109.46917 * 29.99525 * 19 18 17 22 22 H 1.08998 * 109.46661 * 90.03323 * 1 2 3 23 23 H 1.09004 * 109.47352 * 210.02934 * 1 2 3 24 24 H 1.08996 * 109.47278 * 330.03560 * 1 2 3 25 25 H 1.08002 * 125.79869 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00179 * 359.97438 * 7 5 4 27 27 H 1.08997 * 109.46516 * 300.00030 * 10 8 7 28 28 H 1.09002 * 109.46794 * 59.99503 * 10 8 7 29 29 H 1.08996 * 109.47190 * 60.00224 * 11 10 8 30 30 H 1.09005 * 109.47160 * 179.97438 * 11 10 8 31 31 H 0.96700 * 114.00028 * 179.97438 * 14 12 11 32 32 H 1.09002 * 109.46794 * 60.00268 * 15 12 11 33 33 H 1.09007 * 109.47081 * 179.97438 * 15 12 11 34 34 H 1.09003 * 109.46607 * 300.00095 * 16 15 12 35 35 H 1.08996 * 109.46959 * 180.02562 * 16 15 12 36 36 H 1.07999 * 126.83431 * 180.12143 * 17 4 3 37 37 H 1.09000 * 109.47190 * 269.99908 * 19 18 17 38 38 H 0.96697 * 113.99310 * 180.02562 * 20 19 18 39 39 H 1.48503 * 109.99840 * 60.00602 * 21 19 18 40 40 H 1.48499 * 109.99736 * 181.31561 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 -0.0059 5 6 4.7284 1.5958 -0.0143 6 8 5.8446 1.1128 -0.0194 7 7 4.5733 2.9345 -0.0163 8 6 5.7493 3.8081 -0.0251 9 1 6.5396 3.3476 -0.6182 10 6 5.3757 5.1604 -0.6355 11 6 6.6037 6.0728 -0.6441 12 6 7.0959 6.2791 0.7898 13 1 6.3055 6.7393 1.3826 14 8 8.2426 7.1318 0.7817 15 6 7.4696 4.9268 1.4001 16 6 6.2416 4.0143 1.4088 17 6 3.5375 -0.7492 0.0002 18 6 2.2448 -1.1197 0.0002 19 6 1.7397 -2.5397 0.0003 20 8 0.4807 -2.5974 0.6739 21 14 2.9649 -3.6344 0.8787 22 1 -0.3632 -0.0006 -1.0277 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3633 0.8903 0.5133 25 1 1.8767 2.1241 -0.0004 26 1 3.6831 3.3197 -0.0125 27 1 5.0246 5.0133 -1.6568 28 1 4.5855 5.6208 -0.0424 29 1 7.3941 5.6126 -1.2370 30 1 6.3376 7.0361 -1.0794 31 1 8.6088 7.3068 1.6594 32 1 8.2601 4.4667 0.8073 33 1 7.8208 5.0738 2.4216 34 1 5.4512 4.4746 2.0016 35 1 6.5078 3.0511 1.8440 36 1 4.3981 -1.4017 -0.0002 37 1 1.6181 -2.8821 -1.0273 38 1 0.0957 -3.4836 0.7125 39 1 3.1396 -3.1779 2.2810 40 1 2.4938 -5.0425 0.8580 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13287730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:29 Heat of formation + Delta-G solvation = -75.953011 kcal Electronic energy + Delta-G solvation = -22204.403602 eV Core-core repulsion = 18793.035639 eV Total energy + Delta-G solvation = -3411.367963 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41331 -40.81846 -39.35843 -37.88011 -36.91504 -34.49033 -33.66766 -31.85860 -31.64250 -29.41437 -27.40021 -26.16637 -24.09722 -23.82164 -22.56802 -21.32947 -20.81791 -20.18496 -18.64011 -18.49866 -18.18288 -17.20015 -16.98676 -16.66405 -16.15171 -15.79885 -15.55693 -15.47230 -15.41566 -14.70125 -14.65674 -14.55394 -14.16125 -13.90100 -13.41625 -13.29207 -13.24771 -13.19222 -13.04530 -12.94859 -12.52383 -12.41069 -12.16296 -12.08836 -11.71722 -11.26763 -11.01637 -10.80952 -10.74736 -10.09031 -9.55270 -9.15993 -4.89885 0.74914 1.01133 1.48363 1.56729 1.87524 2.05403 2.26303 2.57133 3.07627 3.30292 3.61633 3.65883 3.74053 3.91589 3.96426 4.05965 4.13081 4.22821 4.28757 4.34307 4.39197 4.42741 4.45089 4.48789 4.50940 4.67585 4.81386 4.90770 4.96337 5.01357 5.03227 5.05469 5.11722 5.13913 5.27641 5.36148 5.55039 5.68503 6.00581 6.24173 6.51060 6.67207 6.87847 7.36971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.427 5.427 3 C 0.068 3.932 4 C -0.261 4.261 5 C 0.589 3.411 6 O -0.592 6.592 7 N -0.713 5.713 8 C 0.146 3.854 9 H 0.062 0.938 10 C -0.111 4.111 11 C -0.112 4.112 12 C 0.104 3.896 13 H 0.072 0.928 14 O -0.589 6.589 15 C -0.145 4.145 16 C -0.121 4.121 17 C -0.161 4.161 18 C 0.014 3.986 19 C -0.044 4.044 20 O -0.551 6.551 21 Si 0.763 3.237 22 H 0.083 0.917 23 H 0.108 0.892 24 H 0.100 0.900 25 H 0.209 0.791 26 H 0.413 0.587 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.394 0.606 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.155 0.845 37 H 0.103 0.897 38 H 0.400 0.600 39 H -0.311 1.311 40 H -0.270 1.270 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 1.418 -0.717 7.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.101 5.101 3 C -0.070 4.070 4 C -0.271 4.271 5 C 0.379 3.621 6 O -0.474 6.474 7 N -0.364 5.364 8 C 0.041 3.959 9 H 0.080 0.920 10 C -0.149 4.149 11 C -0.150 4.150 12 C 0.045 3.955 13 H 0.090 0.910 14 O -0.398 6.398 15 C -0.183 4.183 16 C -0.160 4.160 17 C -0.185 4.185 18 C -0.096 4.096 19 C -0.154 4.154 20 O -0.363 6.363 21 Si 0.668 3.332 22 H 0.102 0.898 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.225 0.775 26 H 0.250 0.750 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.243 0.757 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.173 0.827 37 H 0.121 0.879 38 H 0.252 0.748 39 H -0.239 1.239 40 H -0.195 1.195 Dipole moment (debyes) X Y Z Total from point charges -6.855 1.100 -0.656 6.974 hybrid contribution -1.029 -0.362 0.881 1.402 sum -7.884 0.738 0.225 7.922 Atomic orbital electron populations 1.22647 0.74679 1.06669 1.04665 1.43735 1.08173 1.04742 1.53426 1.22424 0.89096 0.93227 1.02204 1.20305 0.92239 0.93821 1.20713 1.17650 0.87714 0.82225 0.74476 1.90747 1.27671 1.76168 1.52803 1.45716 1.10391 1.04778 1.75493 1.20959 0.87909 0.90573 0.96457 0.91986 1.21686 0.98189 0.92461 1.02590 1.21432 0.97530 1.00465 0.95597 1.21899 0.87655 0.88792 0.97109 0.91029 1.86481 1.47310 1.69689 1.36277 1.22186 0.97979 0.96245 1.01926 1.21797 0.98158 0.99241 0.96823 1.21747 0.95257 0.93741 1.07773 1.19909 0.90125 0.88165 1.11379 1.24381 0.92573 0.95874 1.02554 1.86383 1.33881 1.36298 1.79726 0.93487 0.85747 0.74705 0.79308 0.89847 0.87404 0.88107 0.77474 0.74997 0.89716 0.88835 0.92374 0.90169 0.75665 0.92603 0.90395 0.89949 0.93503 0.82734 0.87947 0.74780 1.23917 1.19541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.30 10.71 127.77 1.37 1.07 16 2 N -0.43 -0.11 3.09 -533.23 -1.65 -1.75 16 3 C 0.07 -0.06 10.83 83.92 0.91 0.85 16 4 C -0.26 -1.57 6.29 -19.04 -0.12 -1.69 16 5 C 0.59 5.31 7.77 86.62 0.67 5.99 16 6 O -0.59 -10.84 16.63 -4.11 -0.07 -10.91 16 7 N -0.71 -0.61 5.07 -445.96 -2.26 -2.87 16 8 C 0.15 0.24 2.45 44.99 0.11 0.36 16 9 H 0.06 0.50 7.58 -2.39 -0.02 0.48 16 10 C -0.11 0.43 5.39 30.59 0.16 0.59 16 11 C -0.11 0.05 5.57 30.59 0.17 0.22 16 12 C 0.10 -0.05 3.47 30.59 0.11 0.06 16 13 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 14 O -0.59 -1.39 13.32 -148.98 -1.98 -3.38 16 15 C -0.14 -0.11 5.55 30.59 0.17 0.06 16 16 C -0.12 -0.21 5.49 30.59 0.17 -0.04 16 17 C -0.16 -1.06 9.49 23.62 0.22 -0.84 16 18 C 0.01 0.04 6.17 40.98 0.25 0.30 16 19 C -0.04 0.08 2.97 71.24 0.21 0.29 16 20 O -0.55 1.67 9.69 -148.98 -1.44 0.23 16 21 Si 0.76 -0.32 31.12 68.60 2.13 1.81 16 22 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 23 H 0.11 -0.41 5.13 -2.39 -0.01 -0.43 16 24 H 0.10 -0.97 8.13 -2.39 -0.02 -0.99 16 25 H 0.21 -2.10 7.45 -2.91 -0.02 -2.12 16 26 H 0.41 -2.69 7.54 -92.71 -0.70 -3.39 16 27 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 28 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.39 -2.12 9.08 -74.06 -0.67 -2.79 16 32 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.08 -0.10 8.14 -2.38 -0.02 -0.12 16 34 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.16 0.85 6.89 -2.91 -0.02 0.83 16 37 H 0.10 -0.61 7.96 -2.39 -0.02 -0.63 16 38 H 0.40 -4.30 8.74 -74.06 -0.65 -4.95 16 39 H -0.31 -2.96 7.11 99.48 0.71 -2.25 16 40 H -0.27 -0.40 7.11 99.48 0.71 0.31 16 Total: 0.00 -25.60 325.22 -1.77 -27.36 By element: Atomic # 1 Polarization: -16.80 SS G_CDS: -0.91 Total: -17.71 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.41 Total: 7.22 kcal Atomic # 7 Polarization: -0.72 SS G_CDS: -3.90 Total: -4.63 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -3.50 Total: -14.06 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: 2.13 Total: 1.81 kcal Total: -25.60 -1.77 -27.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13287730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.590 kcal (2) G-P(sol) polarization free energy of solvation -25.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds