Wall clock time and date at job start Sat Mar 6 2021 15:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38974 * 119.95748 * 2 1 4 4 O 1.35708 * 119.90963 * 359.97438 * 3 2 1 5 5 C 1.39012 * 120.17683 * 179.72465 * 3 2 1 6 6 C 1.50707 * 119.95520 * 180.25518 * 5 3 2 7 7 O 1.42905 * 109.47053 * 285.29363 * 6 5 3 8 8 Si 1.86305 * 109.47021 * 165.29766 * 6 5 3 9 9 C 1.37683 * 120.08720 * 0.55067 * 5 3 2 10 10 C 1.39753 * 119.91059 * 359.72617 * 9 5 3 11 11 C 1.47605 * 120.08441 * 179.97438 * 10 9 5 12 12 O 1.21581 * 119.99886 * 0.02690 * 11 10 9 13 13 N 1.34773 * 119.99687 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99965 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47774 * 34.99797 * 14 13 11 16 16 C 1.52999 * 109.47279 * 154.99999 * 14 13 11 17 17 C 1.53001 * 109.46966 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47753 * 299.99916 * 17 16 14 19 19 H 1.09004 * 109.47251 * 300.00828 * 18 17 16 20 20 O 1.42894 * 109.47703 * 179.97438 * 18 17 16 21 21 C 1.52999 * 109.46816 * 59.99992 * 18 17 16 22 22 C 1.52999 * 109.47209 * 300.00195 * 21 18 17 23 23 C 1.37727 * 119.95432 * 180.27793 * 2 1 3 24 24 H 1.09002 * 109.47152 * 269.72470 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72570 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72551 * 1 2 3 27 27 H 0.96703 * 114.00731 * 89.99838 * 4 3 2 28 28 H 1.08992 * 109.47163 * 45.29292 * 6 5 3 29 29 H 0.96697 * 113.99883 * 300.00149 * 7 6 5 30 30 H 1.48498 * 109.99904 * 58.67823 * 8 6 5 31 31 H 1.48496 * 109.99822 * 180.02562 * 8 6 5 32 32 H 1.08001 * 120.04377 * 179.70286 * 9 5 3 33 33 H 0.97005 * 120.00082 * 0.02562 * 13 11 10 34 34 H 1.08992 * 109.47470 * 299.99413 * 16 14 13 35 35 H 1.09001 * 109.47033 * 60.00205 * 16 14 13 36 36 H 1.09004 * 109.47419 * 60.00642 * 17 16 14 37 37 H 1.09002 * 109.46894 * 179.97438 * 17 16 14 38 38 H 0.96704 * 114.00615 * 179.97438 * 20 18 17 39 39 H 1.08999 * 109.47387 * 60.00218 * 21 18 17 40 40 H 1.09002 * 109.47599 * 180.02562 * 21 18 17 41 41 H 1.09001 * 109.47678 * 300.00100 * 22 21 18 42 42 H 1.09002 * 109.47137 * 180.02562 * 22 21 18 43 43 H 1.07994 * 120.04668 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2094 0.0058 6 6 4.3386 2.5180 0.0116 7 8 4.2717 3.1106 -1.2871 8 14 6.1200 2.2136 0.4641 9 6 4.2859 0.0208 0.0001 10 6 3.5918 -1.1922 -0.0058 11 6 4.3328 -2.4687 -0.0124 12 8 5.5486 -2.4658 -0.0124 13 7 3.6616 -3.6374 -0.0186 14 6 4.3970 -4.9044 -0.0247 15 1 5.3073 -4.7991 0.5656 16 6 3.5221 -6.0048 0.5791 17 6 4.2900 -7.3282 0.5721 18 6 4.6548 -7.6987 -0.8667 19 1 3.7444 -7.8037 -1.4569 20 8 5.3725 -8.9344 -0.8732 21 6 5.5297 -6.5983 -1.4705 22 6 4.7619 -5.2750 -1.4636 23 6 2.1947 -1.1933 -0.0058 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.3219 2.7182 0.8827 28 1 3.8881 3.1905 0.7414 29 1 4.6551 2.5660 -1.9881 30 1 6.7367 1.2730 -0.5054 31 1 6.8678 3.4965 0.4739 32 1 5.3659 0.0258 -0.0003 33 1 2.6916 -3.6397 -0.0190 34 1 3.2620 -5.7408 1.6041 35 1 2.6119 -6.1102 -0.0113 36 1 5.2004 -7.2232 1.1623 37 1 3.6669 -8.1121 1.0027 38 1 5.6363 -9.2315 -1.7548 39 1 6.4401 -6.4932 -0.8804 40 1 5.7893 -6.8620 -2.4958 41 1 3.8514 -5.3800 -2.0537 42 1 5.3850 -4.4911 -1.8942 43 1 1.6548 -2.1285 -0.0107 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:31 Heat of formation + Delta-G solvation = -147.511204 kcal Electronic energy + Delta-G solvation = -25755.167446 eV Core-core repulsion = 21959.214065 eV Total energy + Delta-G solvation = -3795.953381 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80416 -40.80710 -39.57422 -37.99125 -37.54696 -37.00698 -34.66921 -33.97747 -31.95204 -31.87550 -29.30342 -27.98231 -26.89417 -24.98591 -23.88731 -22.97367 -22.05024 -21.54095 -20.91172 -19.61568 -18.85012 -18.21791 -18.13244 -17.64956 -16.85428 -16.56433 -16.37769 -16.13066 -15.90921 -15.77120 -15.50801 -15.15886 -14.84045 -14.72505 -14.38708 -14.21184 -14.07223 -13.87424 -13.38090 -13.29421 -13.24175 -13.05139 -12.87664 -12.80055 -12.50380 -12.43278 -12.19688 -11.94348 -11.76490 -11.63362 -11.31038 -11.12494 -10.78633 -10.63807 -10.23300 -9.98201 -9.64917 -5.03626 -0.39640 0.06641 1.18818 1.50493 1.60355 1.83830 1.98031 2.55840 3.12128 3.25987 3.29798 3.50468 3.54726 3.60706 3.69487 3.71989 3.98254 4.04528 4.08929 4.16543 4.20261 4.28361 4.35398 4.38945 4.42053 4.48835 4.61272 4.64702 4.73862 4.83706 4.87126 4.93407 4.99913 5.04733 5.06940 5.09996 5.11289 5.21704 5.23651 5.29520 5.33226 5.43084 5.61042 6.38149 6.42899 6.76944 6.85858 7.10121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C 0.159 3.841 4 O -0.496 6.496 5 C -0.153 4.153 6 C -0.060 4.060 7 O -0.540 6.540 8 Si 0.747 3.253 9 C -0.066 4.066 10 C -0.151 4.151 11 C 0.559 3.441 12 O -0.579 6.579 13 N -0.706 5.706 14 C 0.143 3.857 15 H 0.067 0.933 16 C -0.112 4.112 17 C -0.112 4.112 18 C 0.103 3.897 19 H 0.072 0.928 20 O -0.589 6.589 21 C -0.145 4.145 22 C -0.123 4.123 23 C -0.053 4.053 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.413 0.587 28 H 0.134 0.866 29 H 0.382 0.618 30 H -0.297 1.297 31 H -0.291 1.291 32 H 0.130 0.870 33 H 0.416 0.584 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.394 0.606 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -2.737 2.337 8.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C 0.113 3.887 4 O -0.310 6.310 5 C -0.154 4.154 6 C -0.170 4.170 7 O -0.347 6.347 8 Si 0.654 3.346 9 C -0.085 4.085 10 C -0.154 4.154 11 C 0.347 3.653 12 O -0.460 6.460 13 N -0.358 5.358 14 C 0.039 3.961 15 H 0.085 0.915 16 C -0.150 4.150 17 C -0.150 4.150 18 C 0.045 3.955 19 H 0.090 0.910 20 O -0.398 6.398 21 C -0.184 4.184 22 C -0.161 4.161 23 C -0.071 4.071 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.274 0.726 28 H 0.151 0.849 29 H 0.231 0.769 30 H -0.225 1.225 31 H -0.219 1.219 32 H 0.147 0.853 33 H 0.255 0.745 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.243 0.757 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.258 -2.214 2.483 7.087 hybrid contribution 0.153 0.166 -1.494 1.511 sum -6.104 -2.049 0.989 6.514 Atomic orbital electron populations 1.20772 0.88180 1.04042 1.03838 1.20457 0.98352 0.91686 1.01523 1.18439 0.88593 0.85960 0.95673 1.84736 1.75402 1.35594 1.35240 1.20504 0.94218 0.95323 1.05355 1.24880 1.09829 0.93949 0.88362 1.86614 1.82892 1.48118 1.17102 0.94195 0.73375 0.77177 0.89815 1.21107 1.00329 0.91105 0.95980 1.19789 0.94426 0.92468 1.08731 1.18415 0.86784 0.84641 0.75430 1.90793 1.15378 1.88125 1.51681 1.45827 1.11084 1.04583 1.74262 1.21044 0.95817 0.82622 0.96636 0.91515 1.21701 0.98584 0.91914 1.02819 1.21432 1.00870 0.97258 0.95478 1.21912 0.93751 0.82694 0.97181 0.91005 1.86482 1.77454 1.39723 1.36113 1.22187 0.99177 0.95041 1.01966 1.21810 1.01040 0.96606 0.96683 1.21372 0.91513 0.99141 0.95109 0.89323 0.89723 0.91330 0.72610 0.84858 0.76901 1.22467 1.21872 0.85287 0.74540 0.89409 0.88715 0.92315 0.90133 0.75670 0.92570 0.90449 0.89771 0.93426 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.83 9.79 71.24 0.70 1.53 16 2 C -0.12 0.41 5.89 -19.81 -0.12 0.29 16 3 C 0.16 -0.07 6.66 22.63 0.15 0.08 16 4 O -0.50 0.79 11.84 -90.29 -1.07 -0.28 16 5 C -0.15 -0.20 5.27 -19.81 -0.10 -0.30 16 6 C -0.06 -0.07 2.37 71.24 0.17 0.10 16 7 O -0.54 -2.83 12.88 -148.98 -1.92 -4.75 16 8 Si 0.75 1.69 30.24 68.60 2.07 3.76 16 9 C -0.07 -0.24 8.20 22.50 0.18 -0.05 16 10 C -0.15 -0.24 5.87 -20.08 -0.12 -0.36 16 11 C 0.56 2.62 7.73 86.72 0.67 3.29 16 12 O -0.58 -8.00 16.00 -3.97 -0.06 -8.07 16 13 N -0.71 1.83 5.03 -445.64 -2.24 -0.41 16 14 C 0.14 -0.18 2.45 44.99 0.11 -0.07 16 15 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 16 C -0.11 0.71 5.39 30.59 0.16 0.87 16 17 C -0.11 0.27 5.57 30.59 0.17 0.44 16 18 C 0.10 -0.21 3.47 30.59 0.11 -0.11 16 19 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 20 O -0.59 -0.65 13.32 -148.98 -1.98 -2.63 16 21 C -0.15 0.16 5.54 30.59 0.17 0.33 16 22 C -0.12 0.10 5.49 30.60 0.17 0.26 16 23 C -0.05 0.23 9.18 22.50 0.21 0.44 16 24 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H 0.08 -0.84 8.08 -2.39 -0.02 -0.85 16 26 H 0.07 -0.33 7.51 -2.38 -0.02 -0.35 16 27 H 0.41 -4.50 9.06 -74.06 -0.67 -5.17 16 28 H 0.13 -0.33 7.83 -2.39 -0.02 -0.35 16 29 H 0.38 0.30 8.70 -74.06 -0.64 -0.34 16 30 H -0.30 -2.66 6.68 99.48 0.66 -1.99 16 31 H -0.29 -2.45 7.11 99.48 0.71 -1.74 16 32 H 0.13 0.81 4.43 -2.91 -0.01 0.80 16 33 H 0.42 -4.04 6.62 -92.70 -0.61 -4.65 16 34 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.39 -2.55 9.08 -74.05 -0.67 -3.22 16 39 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.16 -1.91 6.39 -2.91 -0.02 -1.93 16 Total: 0.00 -24.46 348.70 -4.10 -28.56 By element: Atomic # 1 Polarization: -21.42 SS G_CDS: -1.53 Total: -22.95 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 2.63 Total: 6.75 kcal Atomic # 7 Polarization: 1.83 SS G_CDS: -2.24 Total: -0.41 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -5.04 Total: -15.72 kcal Atomic # 14 Polarization: 1.69 SS G_CDS: 2.07 Total: 3.76 kcal Total: -24.46 -4.10 -28.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.949 kcal (2) G-P(sol) polarization free energy of solvation -24.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds