Wall clock time and date at job start Sat Mar 6 2021 15:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36419 * 125.79953 * 2 1 4 4 C 1.47377 * 127.19580 * 0.03123 * 3 2 1 5 5 O 1.21612 * 119.99874 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00162 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00196 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47258 * 324.99869 * 7 6 4 9 9 C 1.53002 * 109.47402 * 84.99973 * 7 6 4 10 10 C 1.53000 * 109.47311 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47102 * 300.00177 * 10 9 7 12 12 H 1.09006 * 109.47202 * 299.99701 * 11 10 9 13 13 O 1.42903 * 109.46699 * 180.02562 * 11 10 9 14 14 C 1.52992 * 109.47370 * 60.00110 * 11 10 9 15 15 C 1.53005 * 109.47296 * 205.00087 * 7 6 4 16 16 C 1.47023 * 105.61077 * 179.79565 * 3 2 1 17 17 C 1.34176 * 105.95581 * 0.38462 * 16 3 2 18 18 C 1.50700 * 125.43614 * 179.86551 * 17 16 3 19 19 O 1.42896 * 109.47341 * 299.72023 * 18 17 16 20 20 Si 1.86300 * 109.46849 * 179.71909 * 18 17 16 21 21 O 1.33647 * 125.80137 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.46961 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46935 * 299.98883 * 1 2 3 24 24 H 1.09006 * 109.46829 * 59.98635 * 1 2 3 25 25 H 0.97010 * 120.00312 * 0.02562 * 6 4 3 26 26 H 1.08995 * 109.47056 * 300.00651 * 9 7 6 27 27 H 1.09008 * 109.46521 * 59.99776 * 9 7 6 28 28 H 1.08998 * 109.46699 * 179.97438 * 10 9 7 29 29 H 1.08997 * 109.46828 * 60.00351 * 10 9 7 30 30 H 0.96693 * 114.00298 * 60.00239 * 13 11 10 31 31 H 1.09001 * 109.47530 * 179.97438 * 14 11 10 32 32 H 1.09006 * 109.47292 * 59.99646 * 14 11 10 33 33 H 1.08997 * 109.47402 * 299.99830 * 15 7 6 34 34 H 1.09000 * 109.46860 * 59.99969 * 15 7 6 35 35 H 1.08000 * 127.02066 * 180.25640 * 16 3 2 36 36 H 1.09000 * 109.46989 * 59.72353 * 18 17 16 37 37 H 0.96693 * 114.00306 * 299.99773 * 19 18 17 38 38 H 1.48506 * 110.00048 * 58.68772 * 20 18 17 39 39 H 1.48502 * 109.99996 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8740 2.5158 0.0006 5 8 0.6890 2.7892 0.0017 6 7 2.7930 3.5015 0.0000 7 6 2.3646 4.9024 0.0001 8 1 1.4530 5.0037 -0.5889 9 6 2.0960 5.3536 1.4372 10 6 1.6479 6.8166 1.4372 11 6 2.7482 7.6869 0.8266 12 1 3.6599 7.5862 1.4155 13 8 2.3298 9.0533 0.8272 14 6 3.0167 7.2358 -0.6104 15 6 3.4653 5.7725 -0.6103 16 6 3.6849 0.5991 0.0051 17 6 3.5859 -0.7390 -0.0011 18 6 4.7459 -1.7010 -0.0020 19 8 5.5423 -1.4858 -1.1688 20 14 4.1026 -3.4494 -0.0029 21 8 2.2888 -1.0839 -0.0005 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5141 -0.8899 25 1 3.7383 3.2835 -0.0012 26 1 1.3119 4.7338 1.8720 27 1 3.0076 5.2524 2.0261 28 1 1.4561 7.1377 2.4610 29 1 0.7362 6.9172 0.8484 30 1 2.1420 9.4068 1.7074 31 1 3.8003 7.8562 -1.0456 32 1 2.1050 7.3365 -1.1993 33 1 4.3769 5.6714 -0.0214 34 1 3.6566 5.4511 -1.6341 35 1 4.5928 1.1840 0.0103 36 1 5.3538 -1.5380 0.8880 37 1 5.0650 -1.6138 -1.9999 38 1 3.2463 -3.6750 -1.1951 39 1 5.2369 -4.4079 -0.0032 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:42 Heat of formation + Delta-G solvation = -114.554382 kcal Electronic energy + Delta-G solvation = -22445.025253 eV Core-core repulsion = 18934.264747 eV Total energy + Delta-G solvation = -3510.760506 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.77995 -41.03506 -39.51355 -38.16584 -37.01169 -34.71484 -33.95049 -33.10608 -31.89815 -29.91085 -29.00962 -25.88749 -24.47150 -23.89230 -23.09619 -21.83700 -21.38694 -20.44592 -19.00331 -18.22957 -17.97191 -17.73578 -17.40472 -16.80314 -16.29385 -16.03141 -15.84313 -15.58556 -15.48614 -14.85225 -14.71690 -14.32237 -14.19427 -14.10477 -13.93672 -13.84648 -13.37097 -13.27402 -13.01979 -12.93569 -12.83571 -12.46608 -12.20716 -12.18575 -11.77881 -11.32205 -11.20399 -10.96972 -10.78333 -10.74208 -10.14676 -9.59158 -4.94107 0.21639 0.81503 1.17795 1.41555 1.69729 1.91256 2.09975 2.23293 3.16070 3.25759 3.38039 3.55400 3.68936 3.72768 3.77483 4.00286 4.09054 4.10456 4.18926 4.27515 4.36200 4.39484 4.40765 4.48394 4.58374 4.63143 4.64579 4.75800 4.85887 4.94057 4.99620 5.07234 5.09407 5.11764 5.20122 5.22403 5.30408 5.45501 5.87546 6.33354 6.47678 6.86040 7.14835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.084 3.916 3 C -0.270 4.270 4 C 0.588 3.412 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.146 3.854 8 H 0.066 0.934 9 C -0.120 4.120 10 C -0.144 4.144 11 C 0.103 3.897 12 H 0.071 0.929 13 O -0.589 6.589 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.146 4.146 17 C -0.058 4.058 18 C -0.031 4.031 19 O -0.533 6.533 20 Si 0.769 3.231 21 O -0.171 6.171 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.413 0.587 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.394 0.606 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.390 0.610 38 H -0.296 1.296 39 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -1.188 3.097 4.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.031 3.969 3 C -0.274 4.274 4 C 0.377 3.623 5 O -0.455 6.455 6 N -0.359 5.359 7 C 0.041 3.959 8 H 0.085 0.915 9 C -0.159 4.159 10 C -0.183 4.183 11 C 0.045 3.955 12 H 0.089 0.911 13 O -0.398 6.398 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.165 4.165 17 C -0.106 4.106 18 C -0.141 4.141 19 O -0.341 6.341 20 Si 0.673 3.327 21 O -0.068 6.068 22 H 0.117 0.883 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.250 0.750 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.244 0.756 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.196 0.804 36 H 0.176 0.824 37 H 0.240 0.760 38 H -0.222 1.222 39 H -0.209 1.209 Dipole moment (debyes) X Y Z Total from point charges 2.547 -1.990 2.472 4.069 hybrid contribution 0.302 0.634 -0.618 0.935 sum 2.849 -1.357 1.854 3.660 Atomic orbital electron populations 1.20569 0.82616 1.05080 1.04929 1.23207 0.94762 0.83045 0.95896 1.21234 0.94331 0.93432 1.18397 1.17386 0.85250 0.84443 0.75197 1.90778 1.17999 1.84627 1.52136 1.45740 1.10103 1.05399 1.74676 1.21012 0.98500 0.79551 0.96804 0.91541 1.21791 1.02061 0.95635 0.96426 1.22178 0.99213 0.94804 1.02058 1.21895 0.95943 0.80718 0.96962 0.91135 1.86480 1.90271 1.26821 1.36192 1.21431 1.02297 0.95523 0.95722 1.21704 0.97960 0.93012 1.02458 1.22795 0.96350 0.93630 1.03762 1.22851 0.82836 0.95968 1.08972 1.24480 0.90068 1.06906 0.92626 1.86637 1.39365 1.91697 1.16443 0.93529 0.78835 0.72274 0.88062 1.83683 1.16830 1.34934 1.71402 0.88285 0.88588 0.89051 0.75015 0.92988 0.90054 0.90198 0.92425 0.75604 0.90305 0.92230 0.89031 0.89986 0.80437 0.82442 0.75986 1.22230 1.20878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.03 9.14 71.24 0.65 0.62 16 2 C 0.08 0.29 7.37 25.26 0.19 0.47 16 3 C -0.27 -1.02 6.31 -18.99 -0.12 -1.14 16 4 C 0.59 3.61 7.78 86.65 0.67 4.28 16 5 O -0.57 -7.31 15.32 -4.07 -0.06 -7.37 16 6 N -0.71 -0.02 5.07 -445.85 -2.26 -2.28 16 7 C 0.15 0.05 2.45 44.99 0.11 0.16 16 8 H 0.07 0.39 7.58 -2.39 -0.02 0.37 16 9 C -0.12 0.02 5.49 30.59 0.17 0.19 16 10 C -0.14 0.12 5.54 30.59 0.17 0.29 16 11 C 0.10 -0.13 3.47 30.59 0.11 -0.02 16 12 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 13 O -0.59 -0.96 13.32 -148.98 -1.98 -2.94 16 14 C -0.11 0.11 5.58 30.61 0.17 0.28 16 15 C -0.11 0.45 5.40 30.61 0.17 0.62 16 16 C -0.15 0.08 10.46 23.65 0.25 0.33 16 17 C -0.06 0.03 6.20 24.76 0.15 0.19 16 18 C -0.03 0.12 2.97 71.24 0.21 0.33 16 19 O -0.53 0.85 12.87 -148.98 -1.92 -1.07 16 20 Si 0.77 -2.17 32.08 68.60 2.20 0.03 16 21 O -0.17 -0.33 8.89 4.52 0.04 -0.29 16 22 H 0.10 -0.39 8.14 -2.39 -0.02 -0.40 16 23 H 0.10 0.10 8.08 -2.39 -0.02 0.08 16 24 H 0.09 0.16 8.08 -2.38 -0.02 0.14 16 25 H 0.41 -2.22 7.77 -92.70 -0.72 -2.94 16 26 H 0.05 0.23 8.14 -2.39 -0.02 0.22 16 27 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 28 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.39 -2.44 9.08 -74.06 -0.67 -3.12 16 31 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 33 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H 0.18 -0.98 7.74 -2.91 -0.02 -1.00 16 36 H 0.16 -1.23 7.96 -2.39 -0.02 -1.24 16 37 H 0.39 -2.42 8.70 -74.06 -0.64 -3.07 16 38 H -0.30 -1.10 7.11 99.48 0.71 -0.40 16 39 H -0.28 -0.79 7.11 99.48 0.71 -0.09 16 Total: 0.00 -18.54 326.36 -2.01 -20.55 By element: Atomic # 1 Polarization: -12.30 SS G_CDS: -0.92 Total: -13.22 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 2.89 Total: 6.59 kcal Atomic # 7 Polarization: -0.02 SS G_CDS: -2.26 Total: -2.28 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -3.92 Total: -11.66 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.20 Total: 0.03 kcal Total: -18.54 -2.01 -20.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.008 kcal (2) G-P(sol) polarization free energy of solvation -18.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds