Wall clock time and date at job start Sat Mar 6 2021 15:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38510 * 119.80311 * 119.72565 * 4 2 1 6 6 C 1.37839 * 120.29779 * 179.76194 * 5 4 2 7 7 C 1.39668 * 119.90739 * 0.49256 * 6 5 4 8 8 C 1.47537 * 120.19026 * 179.78312 * 7 6 5 9 9 O 1.21593 * 119.99611 * 179.97438 * 8 7 6 10 10 N 1.34765 * 119.99946 * 359.97438 * 8 7 6 11 11 C 1.46505 * 120.00074 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47008 * 325.00527 * 11 10 8 13 13 C 1.53005 * 109.46911 * 84.99900 * 11 10 8 14 14 C 1.52996 * 109.47349 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47102 * 300.00273 * 14 13 11 16 16 H 1.08997 * 109.46968 * 299.99644 * 15 14 13 17 17 O 1.42901 * 109.47201 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.46941 * 59.99745 * 15 14 13 19 19 C 1.52992 * 109.47149 * 299.99834 * 18 15 14 20 20 C 1.40180 * 119.61883 * 359.76417 * 7 6 5 21 21 O 1.35645 * 120.14989 * 179.97438 * 20 7 6 22 22 C 1.38096 * 119.80837 * 299.99989 * 4 2 1 23 23 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 24 24 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 25 25 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 26 26 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 27 27 H 1.07995 * 119.85236 * 0.02562 * 5 4 2 28 28 H 1.08002 * 120.04433 * 180.25431 * 6 5 4 29 29 H 0.97002 * 120.00583 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.47277 * 300.00577 * 13 11 10 31 31 H 1.09007 * 109.46629 * 60.00078 * 13 11 10 32 32 H 1.08999 * 109.47257 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.46919 * 59.99948 * 14 13 11 34 34 H 0.96708 * 113.99859 * 59.99643 * 17 15 14 35 35 H 1.09002 * 109.46977 * 179.97438 * 18 15 14 36 36 H 1.09003 * 109.47228 * 60.00551 * 18 15 14 37 37 H 1.09001 * 109.47161 * 299.99881 * 19 18 15 38 38 H 1.09005 * 109.46862 * 180.02562 * 19 18 15 39 39 H 0.96706 * 114.00394 * 270.02072 * 21 20 7 40 40 H 1.07999 * 119.95533 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7226 -0.0318 -2.1424 6 6 3.1917 -0.6730 -3.2687 7 6 2.8598 -2.0102 -3.4979 8 6 3.3546 -2.7013 -4.7038 9 8 3.0638 -3.8656 -4.8996 10 7 4.1286 -2.0421 -5.5884 11 6 4.6204 -2.7285 -6.7856 12 1 4.8284 -3.7715 -6.5468 13 6 3.5589 -2.6591 -7.8854 14 6 4.0721 -3.3764 -9.1356 15 6 5.3551 -2.6992 -9.6216 16 1 5.1473 -1.6563 -9.8607 17 8 5.8348 -3.3696 -10.7889 18 6 6.4165 -2.7687 -8.5218 19 6 5.9033 -2.0513 -7.2718 20 6 2.0543 -2.6920 -2.5752 21 8 1.7249 -3.9907 -2.7873 22 6 1.5953 -2.0326 -1.4450 23 1 -0.3934 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8900 25 1 1.5879 2.4585 -1.2243 26 1 1.5615 2.4679 1.2085 27 1 2.9768 1.0033 -1.9680 28 1 3.8119 -0.1411 -3.9750 29 1 4.3609 -1.1134 -5.4320 30 1 2.6450 -3.1419 -7.5393 31 1 3.3508 -1.6160 -8.1242 32 1 3.3161 -3.3266 -9.9192 33 1 4.2799 -4.4193 -8.8964 34 1 5.2119 -3.3654 -11.5287 35 1 7.3307 -2.2866 -8.8683 36 1 6.6243 -3.8117 -8.2828 37 1 5.6956 -1.0083 -7.5109 38 1 6.6597 -2.1004 -6.4884 39 1 0.9081 -4.1122 -3.2905 40 1 0.9745 -2.5539 -0.7313 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:49 Heat of formation + Delta-G solvation = -141.493450 kcal Electronic energy + Delta-G solvation = -23708.509110 eV Core-core repulsion = 20068.354298 eV Total energy + Delta-G solvation = -3640.154812 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74838 -40.52336 -39.39351 -38.49123 -37.24627 -36.93229 -34.62075 -32.74166 -31.88464 -31.11263 -29.48526 -27.30408 -24.03933 -23.93018 -23.81024 -22.74165 -21.53886 -21.04712 -19.49206 -18.71880 -18.29940 -18.20219 -17.59392 -16.69407 -16.59626 -16.40674 -16.09938 -15.94726 -15.71131 -15.50594 -15.19970 -14.84240 -14.70620 -14.48821 -14.14947 -13.74096 -13.36736 -13.27229 -13.23956 -12.97049 -12.95722 -12.46714 -12.36938 -12.19449 -12.15418 -11.76350 -11.60657 -11.29468 -10.97838 -10.77560 -10.65782 -10.23623 -10.00140 -9.78717 -4.89344 -0.41799 0.14624 1.28162 1.62464 1.71072 1.99603 2.01515 2.57198 3.09745 3.26594 3.40095 3.47232 3.58640 3.68811 3.70916 3.78550 4.01678 4.06464 4.12145 4.20576 4.27594 4.29363 4.38763 4.42627 4.43261 4.63312 4.64466 4.76513 4.87936 4.94208 5.00323 5.03075 5.08171 5.11546 5.14431 5.23951 5.24552 5.31145 5.45849 5.59807 6.46135 6.48185 6.68885 6.86538 7.17269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.095 4.095 3 Si 0.780 3.220 4 C -0.070 4.070 5 C -0.131 4.131 6 C -0.052 4.052 7 C -0.180 4.180 8 C 0.555 3.445 9 O -0.565 6.565 10 N -0.708 5.708 11 C 0.145 3.855 12 H 0.061 0.939 13 C -0.120 4.120 14 C -0.146 4.146 15 C 0.103 3.897 16 H 0.074 0.926 17 O -0.590 6.590 18 C -0.113 4.113 19 C -0.113 4.113 20 C 0.150 3.850 21 O -0.499 6.499 22 C -0.141 4.141 23 H 0.388 0.612 24 H 0.125 0.875 25 H -0.269 1.269 26 H -0.308 1.308 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.416 0.584 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.394 0.606 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.406 0.594 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 8.260 -1.941 8.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.203 4.203 3 Si 0.684 3.316 4 C -0.071 4.071 5 C -0.148 4.148 6 C -0.070 4.070 7 C -0.183 4.183 8 C 0.343 3.657 9 O -0.445 6.445 10 N -0.361 5.361 11 C 0.040 3.960 12 H 0.079 0.921 13 C -0.159 4.159 14 C -0.184 4.184 15 C 0.045 3.955 16 H 0.092 0.908 17 O -0.398 6.398 18 C -0.151 4.151 19 C -0.150 4.150 20 C 0.104 3.896 21 O -0.312 6.312 22 C -0.160 4.160 23 H 0.238 0.762 24 H 0.143 0.857 25 H -0.195 1.195 26 H -0.236 1.236 27 H 0.182 0.818 28 H 0.188 0.812 29 H 0.254 0.746 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.265 0.735 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.644 7.720 -0.874 8.207 hybrid contribution -2.266 -0.381 -0.850 2.450 sum 0.378 7.339 -1.724 7.548 Atomic orbital electron populations 1.86601 1.18284 1.80492 1.50265 1.25486 0.83709 1.12797 0.98260 0.93942 0.89976 0.70780 0.76879 1.20504 0.96400 0.93575 0.96629 1.21254 0.98322 1.01293 0.93907 1.21518 0.96780 0.91245 0.97463 1.20462 1.05397 0.96122 0.96360 1.18349 0.78500 0.85879 0.82951 1.90816 1.58569 1.17954 1.77130 1.45820 1.51549 1.16294 1.22400 1.20995 0.94122 0.96967 0.83896 0.92109 1.21789 0.97885 1.01897 0.94309 1.22190 0.98176 0.99991 0.98048 1.21915 0.92683 0.95500 0.85415 0.90842 1.86488 1.48193 1.79988 1.25175 1.21436 0.98558 1.01381 0.93730 1.21700 0.95384 1.00754 0.97211 1.18775 0.94564 0.83432 0.92813 1.84718 1.48172 1.20846 1.77446 1.21326 1.01793 0.94801 0.98040 0.76242 0.85740 1.19504 1.23643 0.81832 0.81166 0.74573 0.93313 0.89605 0.90306 0.92783 0.75647 0.90141 0.92563 0.88484 0.89677 0.73460 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.11 12.76 -148.98 -1.90 -2.01 16 2 C -0.09 0.32 2.81 71.24 0.20 0.52 16 3 Si 0.78 -4.83 29.77 68.60 2.04 -2.78 16 4 C -0.07 0.19 5.39 -19.83 -0.11 0.08 16 5 C -0.13 0.88 8.65 22.24 0.19 1.07 16 6 C -0.05 0.32 9.54 22.52 0.21 0.53 16 7 C -0.18 -0.32 5.89 -20.01 -0.12 -0.43 16 8 C 0.55 2.88 7.73 86.70 0.67 3.55 16 9 O -0.57 -8.14 14.82 16.91 0.25 -7.89 16 10 N -0.71 1.74 5.03 -445.70 -2.24 -0.50 16 11 C 0.14 -0.13 2.45 44.99 0.11 -0.02 16 12 H 0.06 0.36 7.58 -2.39 -0.02 0.34 16 13 C -0.12 0.14 5.49 30.59 0.17 0.31 16 14 C -0.15 0.17 5.55 30.59 0.17 0.34 16 15 C 0.10 -0.21 3.47 30.60 0.11 -0.10 16 16 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 17 O -0.59 -0.72 13.32 -148.98 -1.98 -2.71 16 18 C -0.11 0.22 5.57 30.59 0.17 0.39 16 19 C -0.11 0.66 5.39 30.59 0.16 0.82 16 20 C 0.15 0.74 6.72 22.85 0.15 0.89 16 21 O -0.50 -4.16 11.58 -68.68 -0.80 -4.95 16 22 C -0.14 -0.27 9.53 22.34 0.21 -0.05 16 23 H 0.39 -2.34 8.70 -74.06 -0.64 -2.98 16 24 H 0.12 -0.49 7.96 -2.38 -0.02 -0.51 16 25 H -0.27 1.11 7.10 99.48 0.71 1.82 16 26 H -0.31 -0.88 7.11 99.48 0.71 -0.17 16 27 H 0.16 -2.03 4.85 -2.91 -0.01 -2.05 16 28 H 0.17 -2.41 6.40 -2.91 -0.02 -2.43 16 29 H 0.42 -4.16 6.63 -92.71 -0.61 -4.78 16 30 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 32 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.39 -2.57 9.08 -74.05 -0.67 -3.24 16 35 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.08 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H 0.41 0.63 9.06 -74.05 -0.67 -0.04 16 40 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 Total: 0.00 -25.40 327.27 -3.78 -29.18 By element: Atomic # 1 Polarization: -14.78 SS G_CDS: -1.46 Total: -16.23 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 2.31 Total: 7.90 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -2.24 Total: -0.50 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -4.43 Total: -17.56 kcal Atomic # 14 Polarization: -4.83 SS G_CDS: 2.04 Total: -2.78 kcal Total: -25.40 -3.78 -29.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.314 kcal (2) G-P(sol) polarization free energy of solvation -25.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds