Wall clock time and date at job start Sat Mar 6 2021 15:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37787 * 119.85353 * 2 1 4 4 C 1.39710 * 119.90746 * 180.02562 * 3 2 1 5 5 C 1.47532 * 120.18856 * 179.97438 * 4 3 2 6 6 O 1.21594 * 120.00112 * 180.02562 * 5 4 3 7 7 N 1.34779 * 120.00307 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00124 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.47283 * 324.99862 * 8 7 5 10 10 C 1.52993 * 109.47233 * 85.00172 * 8 7 5 11 11 C 1.53001 * 109.47262 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46863 * 299.99639 * 11 10 8 13 13 H 1.09003 * 109.47080 * 300.00158 * 12 11 10 14 14 O 1.42900 * 109.47233 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47078 * 59.99890 * 12 11 10 16 16 C 1.52994 * 109.47508 * 300.00276 * 15 12 11 17 17 C 1.40131 * 119.61655 * 359.97438 * 4 3 2 18 18 O 1.35655 * 120.14791 * 179.97438 * 17 4 3 19 19 C 1.38712 * 119.70464 * 0.25389 * 17 4 3 20 20 C 1.50698 * 119.96267 * 179.74543 * 19 17 4 21 21 O 1.42904 * 109.47024 * 285.00483 * 20 19 17 22 22 Si 1.86295 * 109.47452 * 164.99901 * 20 19 17 23 23 C 1.38057 * 120.07917 * 359.49484 * 19 17 4 24 24 H 1.09009 * 109.46384 * 90.00251 * 1 2 3 25 25 H 1.08991 * 109.47624 * 210.00225 * 1 2 3 26 26 H 1.09004 * 109.46804 * 330.00833 * 1 2 3 27 27 H 1.07994 * 120.04310 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99586 * 0.02562 * 7 5 4 29 29 H 1.09005 * 109.47002 * 300.00103 * 10 8 7 30 30 H 1.09003 * 109.47239 * 59.99663 * 10 8 7 31 31 H 1.09004 * 109.47203 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.47445 * 59.99898 * 11 10 8 33 33 H 0.96697 * 114.00000 * 60.00293 * 14 12 11 34 34 H 1.09005 * 109.47193 * 179.97438 * 15 12 11 35 35 H 1.09003 * 109.46947 * 60.00186 * 15 12 11 36 36 H 1.09003 * 109.46943 * 299.99912 * 16 15 12 37 37 H 1.09002 * 109.47742 * 180.02562 * 16 15 12 38 38 H 0.96700 * 114.00230 * 90.00109 * 18 17 4 39 39 H 1.09003 * 109.46730 * 44.99606 * 20 19 17 40 40 H 0.96702 * 113.99808 * 180.02562 * 21 20 19 41 41 H 1.48501 * 110.00034 * 298.68849 * 22 20 19 42 42 H 1.48503 * 109.99612 * 59.99892 * 22 20 19 43 43 H 1.07997 * 119.80371 * 180.23799 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1950 0.0000 4 6 3.5900 1.1963 -0.0005 5 6 4.3307 2.4723 -0.0011 6 8 5.5466 2.4694 -0.0021 7 7 3.6596 3.6411 -0.0006 8 6 4.3951 4.9081 -0.0017 9 1 5.3062 4.7998 0.5867 10 6 4.7581 5.2857 -1.4392 11 6 5.5268 6.6086 -1.4403 12 6 4.6534 7.7064 -0.8297 13 1 3.7423 7.8151 -1.4181 14 8 5.3711 8.9421 -0.8313 15 6 4.2903 7.3288 0.6077 16 6 3.5217 6.0059 0.6089 17 6 4.2837 -0.0212 -0.0005 18 8 5.6402 -0.0325 -0.0016 19 6 3.5770 -1.2149 -0.0053 20 6 4.3171 -2.5276 -0.0112 21 8 4.8544 -2.7657 -1.3138 22 14 3.1445 -3.9037 0.4381 23 6 2.1966 -1.2018 0.0004 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6512 2.1293 -0.0004 28 1 2.6896 3.6434 0.0005 29 1 5.3807 4.5037 -1.8741 30 1 3.8470 5.3940 -2.0276 31 1 5.7851 6.8779 -2.4645 32 1 6.4380 6.4999 -0.8521 33 1 5.6338 9.2433 -1.7119 34 1 3.6684 8.1111 1.0429 35 1 5.2014 7.2201 1.1961 36 1 2.6105 6.1146 0.0206 37 1 3.2626 5.7370 1.6330 38 1 6.0342 -0.0354 0.8815 39 1 5.1289 -2.4902 0.7154 40 1 5.3447 -3.5956 -1.3913 41 1 2.6031 -3.6843 1.8034 42 1 2.0331 -3.9650 -0.5450 43 1 1.6509 -2.1338 0.0006 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13422088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:53 Heat of formation + Delta-G solvation = -144.342894 kcal Electronic energy + Delta-G solvation = -25940.442711 eV Core-core repulsion = 22144.626719 eV Total energy + Delta-G solvation = -3795.815992 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.91944 -40.66798 -39.43194 -38.18692 -37.61627 -36.97745 -34.72608 -33.28626 -32.88530 -31.92867 -29.42305 -27.65854 -26.83942 -25.34470 -23.92704 -23.04491 -21.94116 -21.54084 -20.94476 -19.67711 -18.47168 -18.45639 -18.20843 -17.96283 -16.92423 -16.87818 -16.37475 -16.07628 -15.76867 -15.54324 -15.39410 -15.04645 -14.91594 -14.76958 -14.57964 -14.33536 -14.20371 -13.77329 -13.39978 -13.30342 -13.17236 -13.04506 -13.03658 -12.74801 -12.52094 -12.47633 -12.23595 -12.05757 -11.83708 -11.76951 -11.33512 -11.01020 -10.80945 -10.38412 -10.30490 -10.11765 -9.64513 -4.97215 -0.50630 -0.06348 1.23407 1.56562 1.63316 1.88484 1.93466 2.42832 3.02034 3.22035 3.27935 3.43750 3.54318 3.56130 3.66030 3.80883 3.94574 3.96402 4.02943 4.06969 4.16698 4.19386 4.25603 4.35443 4.37975 4.38924 4.49183 4.59393 4.66305 4.72124 4.82343 4.84472 4.89128 4.96368 5.02747 5.05434 5.07022 5.07265 5.19905 5.24548 5.25970 5.39573 5.51692 6.38354 6.63232 6.83690 6.86659 7.07616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.059 4.059 4 C -0.178 4.178 5 C 0.558 3.442 6 O -0.560 6.560 7 N -0.708 5.708 8 C 0.146 3.854 9 H 0.065 0.935 10 C -0.122 4.122 11 C -0.145 4.145 12 C 0.104 3.896 13 H 0.072 0.928 14 O -0.589 6.589 15 C -0.112 4.112 16 C -0.112 4.112 17 C 0.167 3.833 18 O -0.484 6.484 19 C -0.126 4.126 20 C -0.082 4.082 21 O -0.564 6.564 22 Si 0.783 3.217 23 C -0.097 4.097 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.168 0.832 28 H 0.414 0.586 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.394 0.606 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.403 0.597 39 H 0.083 0.917 40 H 0.401 0.599 41 H -0.281 1.281 42 H -0.284 1.284 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 -1.941 1.492 6.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.078 4.078 4 C -0.182 4.182 5 C 0.346 3.654 6 O -0.439 6.439 7 N -0.361 5.361 8 C 0.041 3.959 9 H 0.084 0.916 10 C -0.161 4.161 11 C -0.183 4.183 12 C 0.045 3.955 13 H 0.090 0.910 14 O -0.397 6.397 15 C -0.150 4.150 16 C -0.150 4.150 17 C 0.120 3.880 18 O -0.297 6.297 19 C -0.127 4.127 20 C -0.190 4.190 21 O -0.374 6.374 22 Si 0.687 3.313 23 C -0.115 4.115 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.185 0.815 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.262 0.738 39 H 0.101 0.899 40 H 0.252 0.748 41 H -0.208 1.208 42 H -0.212 1.212 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.451 -1.611 1.647 6.851 hybrid contribution 0.478 0.470 -0.254 0.716 sum -5.974 -1.141 1.393 6.240 Atomic orbital electron populations 1.20921 0.87903 1.04621 1.03838 1.20128 0.98279 0.91704 0.99628 1.21444 0.91102 0.99649 0.95563 1.20489 0.95061 0.92801 1.09819 1.18210 0.86900 0.84236 0.76048 1.90810 1.14827 1.87853 1.50420 1.45834 1.10952 1.04570 1.74749 1.21021 0.95738 0.82520 0.96604 0.91633 1.21803 1.00982 0.96650 0.96687 1.22184 0.99157 0.94937 1.02019 1.21898 0.93751 0.82705 0.97109 0.90991 1.86479 1.77473 1.39587 1.36168 1.21427 1.00863 0.97130 0.95557 1.21700 0.98615 0.92021 1.02674 1.18488 0.83806 0.90561 0.95143 1.84762 1.14798 1.96006 1.34090 1.20030 0.93946 0.94529 1.04155 1.24902 1.04652 1.00321 0.89174 1.86492 1.75027 1.46981 1.28865 0.94007 0.77368 0.83747 0.76217 1.21250 0.92884 0.99123 0.98207 0.89794 0.90948 0.88803 0.81514 0.74784 0.93694 0.89875 0.90368 0.92545 0.75620 0.90010 0.92292 0.88747 0.89520 0.73798 0.89933 0.74845 1.20808 1.21159 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.65 10.00 71.24 0.71 1.36 16 2 C -0.10 -0.03 5.87 -19.90 -0.12 -0.15 16 3 C -0.06 0.02 9.18 22.52 0.21 0.23 16 4 C -0.18 -1.12 5.89 -20.01 -0.12 -1.24 16 5 C 0.56 4.58 7.73 86.69 0.67 5.25 16 6 O -0.56 -9.26 14.82 16.91 0.25 -9.01 16 7 N -0.71 -0.21 5.03 -445.71 -2.24 -2.45 16 8 C 0.15 0.13 2.45 44.99 0.11 0.24 16 9 H 0.07 0.44 7.58 -2.39 -0.02 0.42 16 10 C -0.12 -0.18 5.49 30.59 0.17 -0.01 16 11 C -0.14 -0.07 5.55 30.59 0.17 0.10 16 12 C 0.10 -0.09 3.47 30.59 0.11 0.02 16 13 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 14 O -0.59 -1.17 13.32 -148.98 -1.98 -3.16 16 15 C -0.11 0.13 5.57 30.59 0.17 0.30 16 16 C -0.11 0.51 5.39 30.59 0.16 0.68 16 17 C 0.17 1.54 6.69 22.84 0.15 1.70 16 18 O -0.48 -5.31 10.91 -68.78 -0.75 -6.06 16 19 C -0.13 -0.84 5.30 -19.79 -0.11 -0.95 16 20 C -0.08 -0.17 2.37 71.24 0.17 -0.01 16 21 O -0.56 -2.42 12.86 -148.98 -1.92 -4.34 16 22 Si 0.78 -1.85 30.18 68.60 2.07 0.22 16 23 C -0.10 -0.40 8.30 22.30 0.19 -0.22 16 24 H 0.08 -0.54 8.14 -2.38 -0.02 -0.56 16 25 H 0.07 -0.41 8.08 -2.39 -0.02 -0.43 16 26 H 0.09 -0.88 8.08 -2.38 -0.02 -0.90 16 27 H 0.17 -1.41 6.40 -2.91 -0.02 -1.43 16 28 H 0.41 -2.77 6.63 -92.71 -0.62 -3.38 16 29 H 0.04 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.39 -2.23 9.08 -74.06 -0.67 -2.90 16 34 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.40 1.41 9.06 -74.06 -0.67 0.74 16 39 H 0.08 -0.08 7.83 -2.39 -0.02 -0.10 16 40 H 0.40 -2.64 8.74 -74.06 -0.65 -3.29 16 41 H -0.28 -0.58 7.11 99.48 0.71 0.12 16 42 H -0.28 -0.93 6.75 99.48 0.67 -0.26 16 43 H 0.13 0.35 4.86 -2.91 -0.01 0.33 16 Total: 0.00 -27.12 348.01 -3.45 -30.57 By element: Atomic # 1 Polarization: -11.54 SS G_CDS: -1.53 Total: -13.07 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 2.65 Total: 7.29 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: -2.24 Total: -2.45 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -4.40 Total: -22.57 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: 2.07 Total: 0.22 kcal Total: -27.12 -3.45 -30.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13422088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.768 kcal (2) G-P(sol) polarization free energy of solvation -27.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds