Wall clock time and date at job start Sat Mar 6 2021 15:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46899 * 110.99786 * 2 1 4 4 C 1.39040 * 110.99702 * 123.95317 * 2 1 3 5 5 C 1.39197 * 119.92926 * 119.99944 * 4 2 1 6 6 C 1.50698 * 119.96777 * 359.97438 * 5 4 2 7 7 O 1.42905 * 109.47321 * 285.00129 * 6 5 4 8 8 Si 1.86295 * 109.47516 * 165.00019 * 6 5 4 9 9 C 1.37631 * 120.06879 * 180.27275 * 5 4 2 10 10 C 1.39775 * 119.93083 * 359.46251 * 9 5 4 11 11 C 1.47519 * 120.07097 * 180.27482 * 10 9 5 12 12 O 1.21597 * 119.99994 * 0.24281 * 11 10 9 13 13 N 1.34778 * 120.00481 * 180.24345 * 11 10 9 14 14 C 1.46494 * 120.00310 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47183 * 35.00248 * 14 13 11 16 16 C 1.53002 * 109.47001 * 154.99472 * 14 13 11 17 17 C 1.53007 * 109.47042 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47406 * 300.00357 * 17 16 14 19 19 H 1.09004 * 109.47123 * 300.00566 * 18 17 16 20 20 O 1.42896 * 109.47314 * 179.97438 * 18 17 16 21 21 C 1.53011 * 109.46913 * 59.99781 * 18 17 16 22 22 C 1.52998 * 109.47208 * 274.99683 * 14 13 11 23 23 C 1.39811 * 119.86221 * 0.51130 * 10 9 5 24 24 C 1.37589 * 119.92975 * 359.76494 * 23 10 9 25 25 H 1.08996 * 109.46773 * 296.05083 * 1 2 3 26 26 H 1.08998 * 109.46857 * 56.04352 * 1 2 3 27 27 H 1.08997 * 109.47245 * 176.04377 * 1 2 3 28 28 H 1.09003 * 109.46677 * 183.95155 * 3 2 1 29 29 H 1.08996 * 109.47199 * 303.95117 * 3 2 1 30 30 H 1.08996 * 109.47001 * 63.95946 * 3 2 1 31 31 H 1.09001 * 109.47122 * 45.00229 * 6 5 4 32 32 H 0.96696 * 114.00036 * 299.99741 * 7 6 5 33 33 H 1.48496 * 110.00262 * 180.02562 * 8 6 5 34 34 H 1.48497 * 109.99780 * 301.32070 * 8 6 5 35 35 H 1.08003 * 120.03649 * 179.72099 * 9 5 4 36 36 H 0.97000 * 119.99359 * 359.97438 * 13 11 10 37 37 H 1.08994 * 109.47581 * 300.00062 * 16 14 13 38 38 H 1.09003 * 109.46519 * 60.00369 * 16 14 13 39 39 H 1.08998 * 109.46831 * 60.00427 * 17 16 14 40 40 H 1.08997 * 109.47102 * 180.02562 * 17 16 14 41 41 H 0.96702 * 114.00301 * 180.02562 * 20 18 17 42 42 H 1.09003 * 109.46696 * 59.99913 * 21 18 17 43 43 H 1.09000 * 109.46968 * 179.97438 * 21 18 17 44 44 H 1.08998 * 109.47183 * 300.00026 * 22 14 13 45 45 H 1.08997 * 109.46811 * 60.00212 * 22 14 13 46 46 H 1.07999 * 120.03590 * 179.73093 * 23 10 9 47 47 H 1.07997 * 119.96652 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9673 -0.7250 1.0767 5 6 2.7793 -1.8330 0.8518 6 6 3.1165 -2.2453 -0.5579 7 8 1.9812 -2.8756 -1.1544 8 14 4.5465 -3.4391 -0.5306 9 6 3.2694 -2.5561 1.9154 10 6 2.9603 -2.1701 3.2227 11 6 3.4889 -2.9393 4.3651 12 8 4.1980 -3.9076 4.1701 13 7 3.1860 -2.5688 5.6251 14 6 3.7105 -3.3330 6.7595 15 1 4.7100 -3.6970 6.5214 16 6 3.7768 -2.4321 7.9943 17 6 4.3240 -3.2304 9.1794 18 6 3.4024 -4.4181 9.4634 19 1 2.4029 -4.0538 9.7012 20 8 3.9138 -5.1640 10.5697 21 6 3.3362 -5.3191 8.2284 22 6 2.7893 -4.5210 7.0437 23 6 2.1449 -1.0564 3.4454 24 6 1.6533 -0.3410 2.3778 25 1 -0.3633 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 3.3899 -1.3643 -1.1386 32 1 1.6819 -3.6687 -0.6891 33 1 4.8892 -3.8529 -1.9149 34 1 5.7240 -2.8064 0.1162 35 1 3.8957 -3.4184 1.7401 36 1 2.6206 -1.7961 5.7806 37 1 4.4330 -1.5857 7.7919 38 1 2.7773 -2.0681 8.2325 39 1 5.3234 -3.5947 8.9414 40 1 4.3708 -2.5887 10.0592 41 1 3.3786 -5.9339 10.8062 42 1 4.3356 -5.6834 7.9905 43 1 2.6799 -6.1655 8.4309 44 1 1.7899 -4.1570 7.2819 45 1 2.7422 -5.1628 6.1640 46 1 1.9007 -0.7583 4.4543 47 1 1.0238 0.5196 2.5491 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13422196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:57 Heat of formation + Delta-G solvation = -82.621313 kcal Electronic energy + Delta-G solvation = -27683.154726 eV Core-core repulsion = 23832.196226 eV Total energy + Delta-G solvation = -3850.958501 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.77113 -40.79644 -39.55290 -37.83610 -37.26874 -36.94600 -34.62835 -32.76939 -31.87415 -31.41833 -29.32063 -28.55387 -26.91052 -26.08652 -23.90709 -23.65967 -22.94854 -22.52713 -21.35730 -20.85305 -19.13549 -18.20173 -17.89269 -17.64332 -17.54630 -16.62586 -16.44017 -16.27755 -15.99394 -15.85589 -15.54097 -15.49737 -15.25205 -14.90449 -14.76739 -14.71474 -14.23777 -14.19452 -13.97630 -13.53073 -13.35553 -13.25447 -13.12784 -13.01688 -12.94595 -12.66455 -12.55401 -12.43927 -12.26402 -12.17178 -12.05860 -11.73953 -11.29136 -11.09390 -10.76205 -10.40711 -10.20725 -10.10503 -9.77723 -9.50570 -5.04579 -0.38280 0.15470 1.26068 1.54844 1.67604 1.88097 2.01028 2.64032 2.78933 3.27494 3.49459 3.57146 3.64495 3.67614 3.72200 3.81905 4.00210 4.05584 4.12472 4.15295 4.21553 4.24276 4.30475 4.35300 4.39967 4.44222 4.44312 4.49285 4.58533 4.65254 4.65803 4.77598 4.88714 4.91841 4.95643 4.99797 5.02507 5.04246 5.09875 5.12359 5.13332 5.25362 5.26075 5.31690 5.45158 5.56206 5.84326 6.28540 6.45693 6.81220 6.87881 7.13120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.525 5.525 3 C 0.025 3.975 4 C 0.137 3.863 5 C -0.117 4.117 6 C -0.036 4.036 7 O -0.541 6.541 8 Si 0.734 3.266 9 C -0.058 4.058 10 C -0.148 4.148 11 C 0.558 3.442 12 O -0.574 6.574 13 N -0.707 5.707 14 C 0.143 3.857 15 H 0.066 0.934 16 C -0.113 4.113 17 C -0.113 4.113 18 C 0.103 3.897 19 H 0.072 0.928 20 O -0.590 6.590 21 C -0.145 4.145 22 C -0.121 4.121 23 C -0.056 4.056 24 C -0.157 4.157 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.107 0.893 32 H 0.389 0.611 33 H -0.289 1.289 34 H -0.296 1.296 35 H 0.140 0.860 36 H 0.415 0.585 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.394 0.606 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.161 0.839 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 3.515 4.225 8.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.246 5.246 3 C -0.121 4.121 4 C 0.042 3.958 5 C -0.119 4.119 6 C -0.148 4.148 7 O -0.348 6.348 8 Si 0.641 3.359 9 C -0.077 4.077 10 C -0.151 4.151 11 C 0.347 3.653 12 O -0.454 6.454 13 N -0.359 5.359 14 C 0.039 3.961 15 H 0.084 0.916 16 C -0.151 4.151 17 C -0.151 4.151 18 C 0.044 3.956 19 H 0.090 0.910 20 O -0.399 6.399 21 C -0.184 4.184 22 C -0.160 4.160 23 C -0.075 4.075 24 C -0.177 4.177 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.238 0.762 33 H -0.216 1.216 34 H -0.223 1.223 35 H 0.157 0.843 36 H 0.253 0.747 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.179 0.821 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.475 3.420 2.958 6.361 hybrid contribution -0.681 0.625 0.471 1.037 sum -5.156 4.044 3.429 7.395 Atomic orbital electron populations 1.22439 0.84239 1.02915 1.01709 1.59370 1.09808 1.14672 1.40759 1.22521 1.00661 0.86771 1.02157 1.18983 0.94119 0.93114 0.89603 1.20245 0.99553 0.96278 0.95791 1.24676 0.97175 1.01824 0.91131 1.86520 1.47748 1.45804 1.54706 0.94244 0.76091 0.85929 0.79594 1.21073 0.97052 0.98314 0.91237 1.19860 1.03360 0.98988 0.92891 1.18387 0.79639 0.83529 0.83761 1.90797 1.39340 1.29383 1.85905 1.45836 1.52616 1.32964 1.04504 1.21031 0.97605 0.92073 0.85389 0.91606 1.21704 1.03807 0.97730 0.91894 1.21431 0.99037 0.96103 0.98503 1.21916 0.97265 0.91443 0.84944 0.91014 1.86483 1.56590 1.45571 1.51224 1.22180 1.01863 0.99072 0.95247 1.21788 0.99852 0.96567 0.97774 1.21444 0.93330 0.92034 1.00663 1.21847 1.01965 1.01632 0.92244 0.93893 0.90234 0.91437 0.91887 0.89832 0.93750 0.87586 0.76234 1.21588 1.22311 0.84323 0.74653 0.89811 0.88731 0.92391 0.90341 0.75631 0.92577 0.90248 0.89757 0.92844 0.82127 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 9.34 127.69 1.19 1.12 16 2 N -0.52 -0.25 4.20 -745.11 -3.13 -3.38 16 3 C 0.03 -0.06 9.38 127.69 1.20 1.14 16 4 C 0.14 0.08 4.70 38.47 0.18 0.26 16 5 C -0.12 -0.25 5.27 -19.78 -0.10 -0.36 16 6 C -0.04 -0.11 2.33 71.24 0.17 0.06 16 7 O -0.54 -1.42 12.88 -148.98 -1.92 -3.34 16 8 Si 0.73 2.56 29.92 68.60 2.05 4.61 16 9 C -0.06 -0.15 8.19 22.50 0.18 0.03 16 10 C -0.15 -0.11 5.88 -20.08 -0.12 -0.23 16 11 C 0.56 2.01 7.73 86.69 0.67 2.68 16 12 O -0.57 -6.88 16.00 -4.02 -0.06 -6.95 16 13 N -0.71 2.23 5.03 -445.72 -2.24 -0.01 16 14 C 0.14 -0.25 2.45 44.99 0.11 -0.14 16 15 H 0.07 0.28 7.58 -2.39 -0.02 0.27 16 16 C -0.11 0.69 5.39 30.60 0.16 0.86 16 17 C -0.11 0.25 5.57 30.60 0.17 0.42 16 18 C 0.10 -0.25 3.47 30.60 0.11 -0.14 16 19 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 20 O -0.59 -0.52 13.32 -148.98 -1.98 -2.50 16 21 C -0.15 0.28 5.54 30.58 0.17 0.45 16 22 C -0.12 0.24 5.49 30.58 0.17 0.41 16 23 C -0.06 0.27 9.53 22.50 0.21 0.49 16 24 C -0.16 0.57 8.53 22.36 0.19 0.76 16 25 H 0.04 -0.21 7.10 -2.39 -0.02 -0.23 16 26 H 0.08 -0.25 8.12 -2.39 -0.02 -0.27 16 27 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.08 -0.30 8.12 -2.39 -0.02 -0.32 16 30 H 0.04 -0.21 7.31 -2.39 -0.02 -0.23 16 31 H 0.11 0.57 7.77 -2.39 -0.02 0.55 16 32 H 0.39 -1.95 8.70 -74.06 -0.64 -2.59 16 33 H -0.29 -2.77 7.11 99.48 0.71 -2.06 16 34 H -0.30 -2.92 7.11 99.48 0.71 -2.22 16 35 H 0.14 0.42 4.71 -2.91 -0.01 0.40 16 36 H 0.42 -4.13 6.62 -92.71 -0.61 -4.75 16 37 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.09 -0.96 8.14 -2.39 -0.02 -0.97 16 39 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.08 -0.19 8.14 -2.39 -0.02 -0.20 16 41 H 0.39 -2.70 9.08 -74.06 -0.67 -3.37 16 42 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.16 -1.95 6.39 -2.91 -0.02 -1.97 16 47 H 0.15 -1.11 6.99 -2.91 -0.02 -1.13 16 Total: 0.00 -21.01 372.39 -3.52 -24.53 By element: Atomic # 1 Polarization: -19.87 SS G_CDS: -0.89 Total: -20.76 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.66 Total: 7.81 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -5.37 Total: -3.39 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -3.97 Total: -12.79 kcal Atomic # 14 Polarization: 2.56 SS G_CDS: 2.05 Total: 4.61 kcal Total: -21.01 -3.52 -24.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13422196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.095 kcal (2) G-P(sol) polarization free energy of solvation -21.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds