Wall clock time and date at job start Sat Mar 6 2021 15:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37873 * 126.45833 * 2 1 4 4 C 1.46681 * 126.23113 * 359.97438 * 3 2 1 5 5 O 1.21694 * 120.00025 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99884 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.47309 * 35.00142 * 7 6 4 9 9 C 1.53004 * 109.47048 * 155.00026 * 7 6 4 10 10 C 1.52998 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47593 * 300.00208 * 10 9 7 12 12 H 1.09007 * 109.47180 * 300.00496 * 11 10 9 13 13 O 1.42901 * 109.47764 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.47121 * 59.99872 * 11 10 9 15 15 C 1.52996 * 109.47584 * 275.00263 * 7 6 4 16 16 N 1.37645 * 107.53664 * 179.97438 * 3 2 1 17 17 C 1.35532 * 108.64316 * 0.02562 * 16 3 2 18 18 C 1.50702 * 125.56743 * 179.97438 * 17 16 3 19 19 O 1.42897 * 109.47078 * 300.00373 * 18 17 16 20 20 Si 1.86293 * 109.47338 * 179.97438 * 18 17 16 21 21 C 1.35456 * 108.87181 * 359.74305 * 17 16 3 22 22 H 1.09002 * 109.47152 * 89.99880 * 1 2 3 23 23 H 1.09001 * 109.46980 * 329.99981 * 1 2 3 24 24 H 1.09004 * 109.47113 * 209.99962 * 1 2 3 25 25 H 0.96998 * 120.00173 * 0.02562 * 6 4 3 26 26 H 1.08995 * 109.47001 * 300.00270 * 9 7 6 27 27 H 1.08999 * 109.47198 * 60.00308 * 9 7 6 28 28 H 1.09005 * 109.47356 * 60.00121 * 10 9 7 29 29 H 1.08998 * 109.47049 * 180.02562 * 10 9 7 30 30 H 0.96694 * 114.00015 * 179.97438 * 13 11 10 31 31 H 1.08991 * 109.46924 * 60.00380 * 14 11 10 32 32 H 1.09005 * 109.47167 * 180.02562 * 14 11 10 33 33 H 1.09007 * 109.47180 * 300.00432 * 15 7 6 34 34 H 1.09005 * 109.47409 * 59.99761 * 15 7 6 35 35 H 0.96997 * 125.68157 * 179.97438 * 16 3 2 36 36 H 1.09002 * 109.47006 * 59.99637 * 18 17 16 37 37 H 0.96699 * 114.00065 * 179.97438 * 19 18 17 38 38 H 1.48497 * 109.99982 * 298.68102 * 20 18 17 39 39 H 1.48498 * 110.00279 * 60.00342 * 20 18 17 40 40 H 1.08006 * 126.06816 * 180.27918 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5093 -0.0005 5 8 0.7027 2.7766 -0.0015 6 7 2.8037 3.4999 0.0001 7 6 2.3678 4.8985 -0.0010 8 1 1.4553 4.9952 0.5874 9 6 3.4635 5.7747 0.6094 10 6 3.0080 7.2353 0.6089 11 6 2.7373 7.6847 -0.8283 12 1 3.6496 7.5883 -1.4171 13 8 2.3113 9.0487 -0.8289 14 6 1.6416 6.8085 -1.4388 15 6 2.0975 5.3475 -1.4385 16 7 3.6284 0.6626 0.0006 17 6 3.6218 -0.6927 0.0004 18 6 4.8434 -1.5753 0.0003 19 8 5.6241 -1.3079 -1.1663 20 14 4.3183 -3.3627 0.0008 21 6 2.3380 -1.1246 0.0054 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5138 25 1 3.7500 3.2869 0.0005 26 1 3.6560 5.4549 1.6335 27 1 4.3760 5.6781 0.0210 28 1 2.0957 7.3317 1.1976 29 1 3.7888 7.8596 1.0434 30 1 2.1218 9.4012 -1.7091 31 1 0.7294 6.9048 -0.8502 32 1 1.4490 7.1283 -2.4629 33 1 3.0100 5.2508 -2.0270 34 1 1.3169 4.7233 -1.8734 35 1 4.4191 1.2244 0.0004 36 1 5.4388 -1.3716 0.8903 37 1 6.4280 -1.8412 -1.2323 38 1 3.5328 -3.6609 1.2252 39 1 3.5055 -3.6536 -1.2075 40 1 2.0136 -2.1549 0.0108 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:11 Heat of formation + Delta-G solvation = -90.707169 kcal Electronic energy + Delta-G solvation = -22388.304062 eV Core-core repulsion = 18976.296311 eV Total energy + Delta-G solvation = -3412.007751 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.74582 -40.94330 -39.50624 -37.67704 -37.08445 -34.81361 -33.62281 -31.99954 -31.93078 -29.59490 -28.32499 -26.73104 -23.96186 -23.65819 -22.16227 -21.70992 -21.32405 -20.41084 -19.47359 -18.45682 -18.25113 -17.52002 -17.01700 -16.60690 -16.08620 -15.86353 -15.56433 -15.26864 -15.12901 -15.09226 -14.64072 -14.60424 -14.21417 -13.92981 -13.74758 -13.43001 -13.38200 -13.32355 -13.19313 -13.02115 -12.59603 -12.52334 -12.25500 -12.03139 -11.83246 -11.36564 -11.22529 -10.83188 -10.48052 -10.31751 -10.01434 -9.31735 -4.94557 0.16390 1.17672 1.34343 1.73870 1.83560 2.01593 2.09829 2.12405 3.22060 3.26535 3.50033 3.63668 3.70052 3.80203 3.90527 3.94612 4.03577 4.07674 4.14509 4.22621 4.32393 4.35995 4.38353 4.49256 4.56809 4.60608 4.72385 4.80901 4.87031 4.94352 4.97922 5.02661 5.05282 5.12057 5.17600 5.23582 5.34250 5.46918 5.65379 6.19836 6.38182 6.83105 6.83905 6.97287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.087 4.087 3 C -0.067 4.067 4 C 0.591 3.409 5 O -0.560 6.560 6 N -0.712 5.712 7 C 0.145 3.855 8 H 0.069 0.931 9 C -0.113 4.113 10 C -0.112 4.112 11 C 0.104 3.896 12 H 0.071 0.929 13 O -0.588 6.588 14 C -0.144 4.144 15 C -0.122 4.122 16 N -0.506 5.506 17 C 0.074 3.926 18 C -0.061 4.061 19 O -0.565 6.565 20 Si 0.810 3.190 21 C -0.234 4.234 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.409 0.591 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.394 0.606 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.432 0.568 36 H 0.108 0.892 37 H 0.410 0.590 38 H -0.290 1.290 39 H -0.301 1.301 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.637 -2.318 -0.123 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.181 4.181 4 C 0.379 3.621 5 O -0.438 6.438 6 N -0.363 5.363 7 C 0.041 3.959 8 H 0.087 0.913 9 C -0.150 4.150 10 C -0.150 4.150 11 C 0.045 3.955 12 H 0.089 0.911 13 O -0.397 6.397 14 C -0.183 4.183 15 C -0.161 4.161 16 N -0.104 5.104 17 C -0.045 4.045 18 C -0.170 4.170 19 O -0.376 6.376 20 Si 0.715 3.285 21 C -0.258 4.258 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.246 0.754 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.244 0.756 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.273 0.727 36 H 0.126 0.874 37 H 0.263 0.737 38 H -0.217 1.217 39 H -0.229 1.229 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.886 -2.148 0.421 8.184 hybrid contribution -0.018 0.704 -0.598 0.924 sum 7.868 -1.444 -0.177 8.001 Atomic orbital electron populations 1.20337 0.89006 1.02955 1.02351 1.20133 0.96480 0.91134 1.01860 1.20148 0.84374 0.93233 1.20296 1.17090 0.85708 0.83449 0.75853 1.90819 1.17567 1.83647 1.51801 1.45795 1.09635 1.05781 1.75111 1.21060 0.98773 0.79170 0.96862 0.91315 1.21699 0.97819 0.92970 1.02555 1.21422 1.02379 0.95500 0.95663 1.21897 0.95821 0.80749 0.97027 0.91062 1.86481 1.90019 1.27002 1.36190 1.22193 0.99335 0.94662 1.02094 1.21812 1.02011 0.95812 0.96437 1.41758 1.06925 1.06404 1.55282 1.20438 0.95758 0.83253 1.05079 1.24630 0.91635 1.08502 0.92276 1.86415 1.41104 1.68117 1.41933 0.94292 0.84124 0.73809 0.76269 1.20614 0.92023 0.98698 1.14497 0.91428 0.91368 0.90673 0.75440 0.89701 0.88883 0.92200 0.90072 0.75598 0.92398 0.90257 0.90016 0.93257 0.72733 0.87387 0.73688 1.21697 1.22939 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.83 71.24 0.70 -0.12 16 2 C -0.09 -0.87 6.21 -19.56 -0.12 -0.99 16 3 C -0.07 -0.49 7.06 40.35 0.28 -0.20 16 4 C 0.59 4.76 7.75 86.45 0.67 5.43 16 5 O -0.56 -8.74 14.46 -4.33 -0.06 -8.80 16 6 N -0.71 -0.06 5.07 -446.50 -2.27 -2.32 16 7 C 0.15 0.07 2.45 44.99 0.11 0.18 16 8 H 0.07 0.42 7.58 -2.38 -0.02 0.40 16 9 C -0.11 0.52 5.39 30.60 0.16 0.69 16 10 C -0.11 0.15 5.57 30.59 0.17 0.32 16 11 C 0.10 -0.13 3.47 30.59 0.11 -0.02 16 12 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 13 O -0.59 -0.97 13.32 -148.98 -1.98 -2.96 16 14 C -0.14 0.04 5.55 30.61 0.17 0.21 16 15 C -0.12 -0.07 5.50 30.61 0.17 0.10 16 16 N -0.51 -0.58 5.99 -171.93 -1.03 -1.61 16 17 C 0.07 0.23 6.51 41.34 0.27 0.49 16 18 C -0.06 0.28 3.07 71.24 0.22 0.50 16 19 O -0.56 3.00 12.86 -148.98 -1.92 1.08 16 20 Si 0.81 -3.72 30.54 68.60 2.10 -1.62 16 21 C -0.23 -1.77 9.27 22.01 0.20 -1.57 16 22 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.07 0.83 6.49 -2.39 -0.02 0.81 16 24 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.41 -2.67 7.73 -92.71 -0.72 -3.39 16 26 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 29 H 0.08 -0.15 8.14 -2.39 -0.02 -0.16 16 30 H 0.39 -2.38 9.08 -74.06 -0.67 -3.05 16 31 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 33 H 0.08 -0.21 8.14 -2.38 -0.02 -0.22 16 34 H 0.05 0.29 8.14 -2.38 -0.02 0.28 16 35 H 0.43 -2.50 8.19 -92.71 -0.76 -3.26 16 36 H 0.11 -1.10 7.96 -2.39 -0.02 -1.12 16 37 H 0.41 -6.54 8.74 -74.06 -0.65 -7.19 16 38 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 39 H -0.30 -1.32 7.11 99.48 0.71 -0.61 16 40 H 0.14 0.92 6.17 -2.91 -0.02 0.90 16 Total: 0.00 -24.40 325.58 -3.71 -28.12 By element: Atomic # 1 Polarization: -15.24 SS G_CDS: -1.67 Total: -16.91 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 3.12 Total: 5.02 kcal Atomic # 7 Polarization: -0.63 SS G_CDS: -3.30 Total: -3.93 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -3.96 Total: -10.68 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.10 Total: -1.62 kcal Total: -24.40 -3.71 -28.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.590 kcal (2) G-P(sol) polarization free energy of solvation -24.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds