Wall clock time and date at job start Sat Mar 6 2021 15:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.34852 * 125.89102 * 120.02063 * 4 2 1 6 6 C 1.40891 * 107.41833 * 179.97438 * 5 4 2 7 7 C 1.34848 * 107.41488 * 0.02562 * 6 5 4 8 8 C 1.50702 * 125.88637 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47235 * 84.97741 * 8 7 6 10 10 O 1.21278 * 119.99808 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00048 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99962 * 179.97438 * 11 9 8 13 13 H 1.09008 * 109.46893 * 34.99535 * 12 11 9 14 14 C 1.52997 * 109.47121 * 154.99549 * 12 11 9 15 15 C 1.53004 * 109.46852 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47185 * 299.99912 * 15 14 12 17 17 H 1.08995 * 109.47219 * 299.99970 * 16 15 14 18 18 O 1.42900 * 109.47004 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46863 * 60.00259 * 16 15 14 20 20 C 1.52995 * 109.46687 * 274.99711 * 12 11 9 21 21 N 1.36340 * 125.89231 * 299.72083 * 4 2 1 22 22 H 0.96698 * 113.99898 * 59.99565 * 1 2 3 23 23 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 24 24 H 1.48503 * 110.00152 * 60.00114 * 3 2 1 25 25 H 1.48498 * 110.00118 * 181.32340 * 3 2 1 26 26 H 1.07998 * 126.29089 * 0.02743 * 5 4 2 27 27 H 1.08003 * 126.29148 * 180.02562 * 6 5 4 28 28 H 1.09007 * 109.47002 * 204.97165 * 8 7 6 29 29 H 1.08995 * 109.47409 * 324.96979 * 8 7 6 30 30 H 0.96994 * 119.99806 * 359.97438 * 11 9 8 31 31 H 1.09001 * 109.47102 * 299.99985 * 14 12 11 32 32 H 1.08995 * 109.47305 * 59.99945 * 14 12 11 33 33 H 1.09000 * 109.47136 * 60.00734 * 15 14 12 34 34 H 1.09000 * 109.46901 * 180.02562 * 15 14 12 35 35 H 0.96695 * 113.99875 * 180.02562 * 18 16 15 36 36 H 1.09003 * 109.47136 * 59.99973 * 19 16 15 37 37 H 1.09001 * 109.46811 * 179.97438 * 19 16 15 38 38 H 1.08992 * 109.47558 * 299.99777 * 20 12 11 39 39 H 1.09000 * 109.47328 * 60.00081 * 20 12 11 40 40 H 0.97000 * 125.63301 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7101 -0.1728 -2.1912 6 6 2.9454 -1.1749 -3.1532 7 6 2.3010 -2.2865 -2.7440 8 6 2.2760 -3.6093 -3.4656 9 6 3.4944 -4.4112 -3.0868 10 8 4.3036 -3.9535 -2.3080 11 7 3.6853 -5.6367 -3.6144 12 6 4.8701 -6.4160 -3.2466 13 1 5.1222 -6.2236 -2.2037 14 6 4.5787 -7.9062 -3.4343 15 6 5.8162 -8.7201 -3.0508 16 6 6.9906 -8.3137 -3.9433 17 1 6.7381 -8.5060 -4.9860 18 8 8.1466 -9.0734 -3.5847 19 6 7.2820 -6.8234 -3.7556 20 6 6.0448 -6.0097 -4.1387 21 7 1.6814 -2.0092 -1.5616 22 1 -0.3933 0.4418 -0.7650 23 1 1.7923 -0.5139 0.8900 24 1 1.5616 2.4679 1.2085 25 1 3.5346 1.7703 -0.0322 26 1 3.0853 0.8396 -2.2178 27 1 3.5338 -1.0717 -4.0529 28 1 1.3775 -4.1592 -3.1852 29 1 2.2749 -3.4362 -4.5417 30 1 3.0383 -6.0026 -4.2375 31 1 3.7417 -8.1956 -2.7988 32 1 4.3265 -8.0986 -4.4771 33 1 6.0687 -8.5278 -2.0080 34 1 5.6088 -9.7817 -3.1849 35 1 8.9314 -8.8673 -4.1107 36 1 7.5345 -6.6311 -2.7128 37 1 8.1189 -6.5340 -4.3911 38 1 5.7927 -6.2021 -5.1815 39 1 6.2523 -4.9480 -4.0049 40 1 1.1492 -2.6323 -1.0426 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:14 Heat of formation + Delta-G solvation = -90.001880 kcal Electronic energy + Delta-G solvation = -21980.359540 eV Core-core repulsion = 18568.382373 eV Total energy + Delta-G solvation = -3411.977168 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34498 -41.02235 -39.55006 -37.71439 -36.99896 -34.53650 -33.06101 -31.93250 -31.91073 -30.05481 -28.65499 -25.25046 -23.91042 -23.30752 -21.72217 -21.37107 -21.26915 -20.78923 -18.96959 -18.29499 -18.09599 -17.56858 -16.81850 -16.43146 -16.27241 -15.97910 -15.54336 -15.33668 -15.01629 -14.80795 -14.60430 -14.41999 -14.12886 -14.04697 -13.85717 -13.60503 -13.37276 -13.28955 -12.96937 -12.78002 -12.44773 -12.21536 -12.09630 -12.00832 -11.77500 -11.32086 -11.01611 -10.79656 -10.65225 -10.10305 -9.80653 -8.96445 -4.97186 1.10103 1.25854 1.60933 1.68576 1.85639 1.94717 2.27747 2.50313 3.25246 3.49701 3.55961 3.67885 3.68117 3.78485 3.97724 4.01193 4.10719 4.17866 4.21760 4.27576 4.38369 4.39371 4.40133 4.47901 4.60730 4.64532 4.78659 4.85714 4.93538 4.98538 5.06064 5.08126 5.21172 5.24857 5.28190 5.30167 5.48746 5.99230 6.12826 6.52932 6.66165 6.70128 6.83570 7.26588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.053 4.053 3 Si 0.812 3.188 4 C -0.021 4.021 5 C -0.203 4.203 6 C -0.200 4.200 7 C 0.033 3.967 8 C -0.066 4.066 9 C 0.509 3.491 10 O -0.580 6.580 11 N -0.713 5.713 12 C 0.145 3.855 13 H 0.056 0.944 14 C -0.112 4.112 15 C -0.114 4.114 16 C 0.104 3.896 17 H 0.074 0.926 18 O -0.590 6.590 19 C -0.146 4.146 20 C -0.120 4.120 21 N -0.537 5.537 22 H 0.397 0.603 23 H 0.099 0.901 24 H -0.292 1.292 25 H -0.295 1.295 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.419 0.581 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.394 0.606 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -1.882 -7.502 8.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.163 4.163 3 Si 0.716 3.284 4 C -0.134 4.134 5 C -0.228 4.228 6 C -0.225 4.225 7 C -0.081 4.081 8 C -0.106 4.106 9 C 0.296 3.704 10 O -0.459 6.459 11 N -0.366 5.366 12 C 0.040 3.960 13 H 0.074 0.926 14 C -0.150 4.150 15 C -0.152 4.152 16 C 0.045 3.955 17 H 0.092 0.908 18 O -0.399 6.399 19 C -0.185 4.185 20 C -0.159 4.159 21 N -0.133 5.133 22 H 0.248 0.752 23 H 0.116 0.884 24 H -0.220 1.220 25 H -0.222 1.222 26 H 0.169 0.831 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.164 0.836 30 H 0.257 0.743 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.713 -1.645 -5.467 6.810 hybrid contribution 0.430 -0.733 0.124 0.859 sum -3.283 -2.378 -5.342 6.706 Atomic orbital electron populations 1.86438 1.17132 1.82235 1.50721 1.24934 0.85190 1.11327 0.94836 0.93060 0.77275 0.73957 0.84083 1.20969 1.06408 0.85889 1.00183 1.20912 1.04671 1.00797 0.96397 1.20849 1.05635 0.93447 1.02544 1.19936 1.01973 0.96780 0.89411 1.20259 0.96917 0.90117 1.03308 1.21106 0.87661 0.81804 0.79796 1.90759 1.47729 1.70643 1.36744 1.45920 1.25718 1.16772 1.48170 1.20919 0.85241 0.91366 0.98511 0.92574 1.21687 0.97716 0.91304 1.04250 1.21446 0.93448 1.00826 0.99456 1.21910 0.85909 0.89043 0.98615 0.90822 1.86482 1.22531 1.65605 1.65271 1.22189 0.98525 0.95814 1.01959 1.21773 0.94269 0.99173 1.00676 1.41884 1.41572 1.10857 1.18953 0.75229 0.88363 1.22007 1.22205 0.83145 0.84121 0.85291 0.83629 0.74285 0.89824 0.88592 0.92709 0.90242 0.75621 0.93022 0.90339 0.89553 0.93390 0.74443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.53 12.88 -148.98 -1.92 -2.45 16 2 C -0.05 -0.11 3.08 71.24 0.22 0.11 16 3 Si 0.81 0.09 30.58 68.60 2.10 2.18 16 4 C -0.02 -0.09 6.50 41.08 0.27 0.18 16 5 C -0.20 -1.01 9.37 22.14 0.21 -0.80 16 6 C -0.20 -1.05 10.76 22.14 0.24 -0.82 16 7 C 0.03 0.09 5.66 41.08 0.23 0.32 16 8 C -0.07 0.33 6.24 29.10 0.18 0.51 16 9 C 0.51 0.81 7.79 87.66 0.68 1.50 16 10 O -0.58 -7.66 15.70 -3.02 -0.05 -7.70 16 11 N -0.71 3.16 5.08 -442.53 -2.25 0.91 16 12 C 0.14 -0.16 2.45 44.99 0.11 -0.05 16 13 H 0.06 0.34 7.58 -2.38 -0.02 0.32 16 14 C -0.11 0.63 5.39 30.59 0.16 0.79 16 15 C -0.11 0.15 5.57 30.60 0.17 0.32 16 16 C 0.10 -0.14 3.47 30.60 0.11 -0.04 16 17 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 18 O -0.59 -1.11 13.32 -148.98 -1.98 -3.09 16 19 C -0.15 0.06 5.54 30.58 0.17 0.23 16 20 C -0.12 0.09 5.49 30.58 0.17 0.26 16 21 N -0.54 -1.61 6.07 -171.12 -1.04 -2.65 16 22 H 0.40 -2.78 8.70 -74.06 -0.64 -3.43 16 23 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 24 H -0.29 -1.78 7.11 99.48 0.71 -1.08 16 25 H -0.29 -1.96 7.11 99.48 0.71 -1.26 16 26 H 0.15 0.23 6.22 -2.91 -0.02 0.21 16 27 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 28 H 0.13 -1.38 8.14 -2.38 -0.02 -1.40 16 29 H 0.15 -1.53 8.14 -2.39 -0.02 -1.55 16 30 H 0.42 -5.01 8.60 -92.71 -0.80 -5.81 16 31 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.39 -2.32 9.08 -74.06 -0.67 -3.00 16 36 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.42 -0.11 8.96 -92.71 -0.83 -0.94 16 Total: 0.00 -25.51 329.90 -4.04 -29.56 By element: Atomic # 1 Polarization: -17.45 SS G_CDS: -1.82 Total: -19.27 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 2.92 Total: 2.51 kcal Atomic # 7 Polarization: 1.55 SS G_CDS: -3.29 Total: -1.73 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -3.95 Total: -13.25 kcal Atomic # 14 Polarization: 0.09 SS G_CDS: 2.10 Total: 2.18 kcal Total: -25.51 -4.04 -29.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.444 kcal (2) G-P(sol) polarization free energy of solvation -25.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds