Wall clock time and date at job start Sat Mar 6 2021 15:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86298 * 109.47172 * 2 1 4 4 C 1.50697 * 109.47165 * 120.00297 * 2 1 3 5 5 C 1.31116 * 118.54929 * 249.97459 * 4 2 1 6 6 N 1.38921 * 121.85135 * 180.38312 * 5 4 2 7 7 C 1.47032 * 118.88299 * 346.70897 * 6 5 4 8 8 C 1.50698 * 109.82348 * 163.20059 * 7 6 5 9 9 O 1.21279 * 119.99800 * 340.00556 * 8 7 6 10 10 N 1.34778 * 120.00125 * 159.99613 * 8 7 6 11 11 C 1.46494 * 120.00243 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.46972 * 325.00834 * 11 10 8 13 13 C 1.52999 * 109.47012 * 84.99992 * 11 10 8 14 14 C 1.52999 * 109.47156 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47138 * 300.00444 * 14 13 11 16 16 H 1.09006 * 109.47146 * 299.99562 * 15 14 13 17 17 O 1.42898 * 109.47281 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47459 * 59.99742 * 15 14 13 19 19 C 1.52999 * 109.47156 * 300.00247 * 18 15 14 20 20 C 1.53184 * 107.57631 * 43.65800 * 7 6 5 21 21 C 1.50207 * 118.54488 * 69.99870 * 4 2 1 22 22 H 0.96701 * 113.99603 * 59.99198 * 1 2 3 23 23 H 1.08999 * 109.46939 * 240.00219 * 2 1 3 24 24 H 1.48500 * 110.00354 * 298.68484 * 3 2 1 25 25 H 1.48496 * 109.99902 * 60.00546 * 3 2 1 26 26 H 1.08003 * 119.07194 * 0.40698 * 5 4 2 27 27 H 0.96993 * 120.55832 * 166.68803 * 6 5 4 28 28 H 1.09006 * 109.82407 * 284.06280 * 7 6 5 29 29 H 0.97005 * 119.99617 * 0.02562 * 10 8 7 30 30 H 1.08999 * 109.47517 * 300.00143 * 13 11 10 31 31 H 1.09006 * 109.47088 * 60.00618 * 13 11 10 32 32 H 1.09004 * 109.47410 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.47484 * 60.00362 * 14 13 11 34 34 H 0.96699 * 114.00212 * 59.99595 * 17 15 14 35 35 H 1.08990 * 109.47276 * 179.97438 * 18 15 14 36 36 H 1.09005 * 109.46565 * 59.99809 * 18 15 14 37 37 H 1.08996 * 109.46758 * 299.99810 * 19 18 15 38 38 H 1.08994 * 109.47322 * 179.97438 * 19 18 15 39 39 H 1.08999 * 109.41267 * 179.25072 * 20 7 6 40 40 H 1.09000 * 109.64521 * 58.80536 * 20 7 6 41 41 H 1.09002 * 109.32969 * 280.20806 * 21 4 2 42 42 H 1.08996 * 109.33365 * 39.86136 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.5121 -0.0030 2.1693 6 7 3.0072 -0.5883 3.3278 7 6 2.6226 -1.9715 3.6450 8 6 3.5618 -2.5390 4.6779 9 8 4.6510 -2.0341 4.8496 10 7 3.1912 -3.6075 5.4110 11 6 4.1039 -4.1589 6.4155 12 1 5.1311 -4.0668 6.0625 13 6 3.9445 -3.3879 7.7273 14 6 4.8982 -3.9633 8.7762 15 6 4.5698 -5.4394 9.0090 16 1 3.5428 -5.5318 9.3623 17 8 5.4602 -5.9767 9.9891 18 6 4.7292 -6.2104 7.6972 19 6 3.7755 -5.6350 6.6483 20 6 2.7177 -2.7863 2.3514 21 6 1.7451 -2.1978 1.3267 22 1 -0.3933 0.4418 -0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5879 2.4586 -1.2242 25 1 1.5616 2.4678 1.2085 26 1 2.6078 1.0648 2.0384 27 1 3.5970 -0.0929 3.9173 28 1 1.6005 -1.9935 4.0233 29 1 2.3200 -4.0115 5.2735 30 1 4.1789 -2.3364 7.5616 31 1 2.9173 -3.4799 8.0804 32 1 4.7844 -3.4143 9.7110 33 1 5.9253 -3.8709 8.4231 34 1 5.4127 -5.5349 10.8480 35 1 4.4957 -7.2620 7.8631 36 1 5.7563 -6.1179 7.3440 37 1 2.7485 -5.7274 7.0015 38 1 3.8894 -6.1840 5.7136 39 1 2.4507 -3.8232 2.5559 40 1 3.7343 -2.7373 1.9614 41 1 0.7221 -2.4142 1.6345 42 1 1.9316 -2.6487 0.3520 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_15413834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:18 Heat of formation + Delta-G solvation = -108.563302 kcal Electronic energy + Delta-G solvation = -22868.265055 eV Core-core repulsion = 19428.171525 eV Total energy + Delta-G solvation = -3440.093530 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57491 -40.14931 -39.19815 -37.54645 -36.97013 -34.63771 -33.31212 -32.98935 -31.89427 -29.62758 -27.27436 -25.37093 -23.95957 -23.80067 -22.96345 -21.63608 -21.02872 -19.13148 -19.07809 -18.40139 -18.22451 -17.52562 -17.51150 -16.58259 -16.10941 -15.79534 -15.52689 -15.39453 -15.25072 -14.85651 -14.67402 -14.42262 -14.18468 -14.03123 -13.83367 -13.65135 -13.36839 -13.27287 -13.00100 -12.91077 -12.48049 -12.42742 -12.19916 -11.78141 -11.75997 -11.69878 -11.30669 -11.25657 -10.91383 -10.76386 -10.26385 -10.15890 -8.46852 -4.90402 1.30291 1.39136 1.45581 1.58317 1.86244 1.95091 2.61765 3.24944 3.50160 3.58044 3.65888 3.68398 3.78468 3.92599 4.00496 4.04288 4.10253 4.19528 4.24792 4.28557 4.38077 4.41761 4.46573 4.59886 4.63296 4.64793 4.79478 4.86664 4.93923 4.99806 5.01751 5.07685 5.10517 5.22496 5.24186 5.28732 5.30542 5.43751 5.57155 6.25041 6.45310 6.70529 6.80933 6.85256 7.10583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.057 4.057 3 Si 0.740 3.260 4 C -0.247 4.247 5 C 0.135 3.865 6 N -0.737 5.737 7 C 0.137 3.863 8 C 0.515 3.485 9 O -0.571 6.571 10 N -0.707 5.707 11 C 0.145 3.855 12 H 0.065 0.935 13 C -0.121 4.121 14 C -0.145 4.145 15 C 0.103 3.897 16 H 0.071 0.929 17 O -0.590 6.590 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.051 4.051 22 H 0.387 0.613 23 H 0.081 0.919 24 H -0.294 1.294 25 H -0.300 1.300 26 H 0.138 0.862 27 H 0.407 0.593 28 H 0.105 0.895 29 H 0.418 0.582 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.394 0.606 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -2.708 0.253 3.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.168 4.168 3 Si 0.647 3.353 4 C -0.257 4.257 5 C 0.014 3.986 6 N -0.369 5.369 7 C 0.028 3.972 8 C 0.301 3.699 9 O -0.450 6.450 10 N -0.359 5.359 11 C 0.040 3.960 12 H 0.083 0.917 13 C -0.160 4.160 14 C -0.184 4.184 15 C 0.044 3.956 16 H 0.089 0.911 17 O -0.398 6.398 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.089 4.089 22 H 0.236 0.764 23 H 0.099 0.901 24 H -0.221 1.221 25 H -0.228 1.228 26 H 0.154 0.846 27 H 0.243 0.757 28 H 0.122 0.878 29 H 0.256 0.744 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.704 -2.364 0.452 2.949 hybrid contribution -1.249 0.710 0.117 1.442 sum -2.953 -1.654 0.570 3.432 Atomic orbital electron populations 1.86574 1.19639 1.80338 1.50547 1.24706 0.83160 1.09807 0.99098 0.94501 0.91056 0.73874 0.75825 1.20166 1.12321 0.96202 0.97056 1.20508 0.95602 0.96507 0.85936 1.44344 1.54880 1.12924 1.24785 1.21048 0.97514 0.83948 0.94664 1.20811 0.87248 0.80430 0.81401 1.90724 1.24112 1.60870 1.69251 1.45889 1.21047 1.31224 1.37767 1.20996 0.93895 0.93610 0.87482 0.91652 1.21796 1.00700 0.99130 0.94387 1.22183 0.99746 0.96629 0.99803 1.21916 0.93050 0.91503 0.89124 0.91142 1.86483 1.64934 1.62761 1.25658 1.21434 1.00185 1.00247 0.93218 1.21698 1.00893 0.92662 0.99841 1.21791 1.00902 0.99753 0.93452 1.19968 0.98524 0.91082 0.99281 0.76408 0.90080 1.22121 1.22844 0.84563 0.75666 0.87754 0.74402 0.93104 0.89917 0.90406 0.92540 0.75650 0.90314 0.92317 0.88889 0.89540 0.88060 0.91659 0.91640 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.94 12.86 -148.98 -1.92 -3.85 16 2 C -0.06 -0.05 2.80 71.23 0.20 0.15 16 3 Si 0.74 0.08 29.92 68.60 2.05 2.13 16 4 C -0.25 -0.54 5.40 -16.76 -0.09 -0.64 16 5 C 0.14 0.30 9.61 83.41 0.80 1.10 16 6 N -0.74 -1.46 5.46 -329.57 -1.80 -3.26 16 7 C 0.14 -0.15 3.35 44.20 0.15 0.00 16 8 C 0.52 0.74 7.05 87.66 0.62 1.36 16 9 O -0.57 -5.78 15.77 -3.03 -0.05 -5.83 16 10 N -0.71 3.10 5.08 -442.54 -2.25 0.85 16 11 C 0.14 -0.33 2.45 44.99 0.11 -0.22 16 12 H 0.07 0.24 7.58 -2.38 -0.02 0.22 16 13 C -0.12 0.23 5.49 30.59 0.17 0.40 16 14 C -0.15 0.25 5.55 30.59 0.17 0.42 16 15 C 0.10 -0.22 3.47 30.59 0.11 -0.12 16 16 H 0.07 -0.35 8.14 -2.38 -0.02 -0.37 16 17 O -0.59 -0.64 13.32 -148.98 -1.98 -2.63 16 18 C -0.11 0.26 5.57 30.59 0.17 0.43 16 19 C -0.11 0.72 5.39 30.59 0.16 0.89 16 20 C -0.12 0.29 5.44 30.67 0.17 0.46 16 21 C -0.05 0.02 5.86 29.71 0.17 0.19 16 22 H 0.39 -1.49 8.74 -74.06 -0.65 -2.14 16 23 H 0.08 -0.17 7.96 -2.39 -0.02 -0.19 16 24 H -0.29 -1.40 7.11 99.48 0.71 -0.70 16 25 H -0.30 -2.04 6.88 99.48 0.68 -1.35 16 26 H 0.14 0.08 4.34 -2.91 -0.01 0.06 16 27 H 0.41 1.05 8.12 -92.71 -0.75 0.30 16 28 H 0.10 -0.43 8.14 -2.38 -0.02 -0.45 16 29 H 0.42 -4.48 8.60 -92.70 -0.80 -5.27 16 30 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 32 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.39 -2.59 9.08 -74.06 -0.67 -3.26 16 35 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.09 -0.92 8.14 -2.39 -0.02 -0.93 16 38 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.10 -0.73 8.14 -2.39 -0.02 -0.74 16 40 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: 0.00 -19.55 332.24 -4.84 -24.39 By element: Atomic # 1 Polarization: -14.42 SS G_CDS: -1.80 Total: -16.22 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 2.91 Total: 4.42 kcal Atomic # 7 Polarization: 1.64 SS G_CDS: -4.05 Total: -2.41 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -3.95 Total: -12.30 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.05 Total: 2.13 kcal Total: -19.55 -4.84 -24.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_15413834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.177 kcal (2) G-P(sol) polarization free energy of solvation -19.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds