Wall clock time and date at job start Sat Mar 6 2021 15:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.46840 * 2 1 4 4 C 1.50700 * 109.47042 * 119.99604 * 2 1 3 5 5 C 1.31120 * 118.54732 * 342.14613 * 4 2 1 6 6 N 1.38924 * 121.84728 * 179.57044 * 5 4 2 7 7 C 1.47028 * 118.88213 * 13.33512 * 6 5 4 8 8 C 1.53459 * 107.51111 * 316.24556 * 7 6 5 9 9 C 1.50207 * 118.54784 * 162.12133 * 4 2 1 10 10 C 1.50700 * 109.32592 * 320.31479 * 9 4 2 11 11 O 1.21282 * 119.99929 * 276.74255 * 10 9 4 12 12 N 1.34777 * 120.00171 * 96.74810 * 10 9 4 13 13 C 1.46498 * 120.00351 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47375 * 325.00266 * 13 12 10 15 15 C 1.53009 * 109.46954 * 84.99991 * 13 12 10 16 16 C 1.52997 * 109.47057 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47196 * 300.00242 * 16 15 13 18 18 H 1.09003 * 109.47441 * 299.99732 * 17 16 15 19 19 O 1.42901 * 109.46973 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47368 * 59.99918 * 17 16 15 21 21 C 1.52989 * 109.47169 * 299.99994 * 20 17 16 22 22 H 0.96699 * 114.00157 * 182.01704 * 1 2 3 23 23 H 1.08994 * 109.47339 * 240.00086 * 2 1 3 24 24 H 1.48501 * 109.99807 * 179.97438 * 3 2 1 25 25 H 1.48497 * 110.00369 * 301.31557 * 3 2 1 26 26 H 1.07995 * 119.07213 * 359.59232 * 5 4 2 27 27 H 0.96993 * 120.55507 * 193.35822 * 6 5 4 28 28 H 1.08998 * 109.82398 * 75.87855 * 7 6 5 29 29 H 1.09003 * 109.81765 * 196.73047 * 7 6 5 30 30 H 1.08995 * 109.71913 * 301.38553 * 8 7 6 31 31 H 1.09002 * 109.47600 * 180.85541 * 8 7 6 32 32 H 1.08999 * 109.32732 * 79.96612 * 9 4 2 33 33 H 0.97000 * 119.99701 * 359.97438 * 12 10 9 34 34 H 1.08995 * 109.47053 * 300.00646 * 15 13 12 35 35 H 1.09003 * 109.47057 * 59.99999 * 15 13 12 36 36 H 1.09008 * 109.46769 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.46707 * 60.00423 * 16 15 13 38 38 H 0.96705 * 113.99792 * 60.00002 * 19 17 16 39 39 H 1.09003 * 109.47032 * 60.00094 * 20 17 16 40 40 H 1.09000 * 109.47421 * 179.97438 * 20 17 16 41 41 H 1.09007 * 109.47369 * 179.97438 * 21 20 17 42 42 H 1.08994 * 109.47361 * 299.99817 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.1066 -0.8825 2.2352 6 7 1.4945 -1.5354 3.3984 7 6 2.9252 -1.7823 3.6309 8 6 3.5281 -2.2811 2.3108 9 6 3.3545 -1.1902 1.2516 10 6 3.7130 -1.7475 -0.1019 11 8 3.4209 -2.8903 -0.3839 12 7 4.3585 -0.9760 -0.9989 13 6 4.7076 -1.5179 -2.3144 14 1 4.9618 -2.5733 -2.2169 15 6 3.5153 -1.3660 -3.2613 16 6 3.8800 -1.9313 -4.6354 17 6 5.0796 -1.1672 -5.1992 18 1 4.8251 -0.1118 -5.2965 19 8 5.4206 -1.6957 -6.4824 20 6 6.2718 -1.3191 -4.2524 21 6 5.9071 -0.7538 -2.8784 22 1 -0.3933 -0.8828 0.0311 23 1 1.7924 -0.5138 -0.8899 24 1 3.5349 1.7702 0.0006 25 1 1.5354 2.4772 -1.1921 26 1 0.0973 -0.5066 2.1559 27 1 0.8327 -1.8239 4.0462 28 1 3.4146 -0.8581 3.9380 29 1 3.0485 -2.5403 4.4044 30 1 3.0137 -3.1872 1.9907 31 1 4.5888 -2.4893 2.4514 32 1 4.0138 -0.3539 1.4836 33 1 4.5919 -0.0619 -0.7734 34 1 2.6605 -1.9099 -2.8593 35 1 3.2609 -0.3105 -3.3589 36 1 3.0304 -1.8235 -5.3098 37 1 4.1345 -2.9867 -4.5381 38 1 4.7098 -1.6329 -7.1351 39 1 6.5264 -2.3745 -4.1552 40 1 7.1266 -0.7751 -4.6543 41 1 6.7564 -0.8624 -2.2037 42 1 5.6526 0.3016 -2.9756 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_15608500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:21 Heat of formation + Delta-G solvation = -115.634894 kcal Electronic energy + Delta-G solvation = -23928.777299 eV Core-core repulsion = 20488.377122 eV Total energy + Delta-G solvation = -3440.400177 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70292 -40.19156 -39.11132 -37.54082 -37.02905 -34.66884 -33.45574 -32.29943 -31.99250 -29.59610 -27.03418 -26.08349 -23.98681 -23.36613 -22.99455 -21.71292 -21.07403 -19.29233 -18.81975 -18.30644 -18.11582 -17.92937 -17.40037 -16.45939 -16.15365 -15.78304 -15.61078 -15.28808 -15.15437 -15.05772 -14.60744 -14.44241 -14.37026 -13.92134 -13.87283 -13.44777 -13.36110 -13.18160 -13.09398 -12.55434 -12.48333 -12.32255 -12.28157 -12.11435 -11.85898 -11.59357 -11.38504 -11.18337 -10.97500 -10.91020 -10.73353 -10.20235 -8.25754 -4.84301 1.25665 1.48190 1.56944 1.64630 2.03930 2.20019 2.73193 3.18770 3.45679 3.54080 3.59500 3.72097 3.85463 3.92535 3.99572 4.05002 4.10613 4.14986 4.20167 4.28027 4.29909 4.31233 4.42801 4.46998 4.54916 4.62072 4.76271 4.77869 4.82333 4.87437 4.89202 4.98049 5.01071 5.13566 5.20483 5.23809 5.33381 5.39018 5.51493 6.39223 6.45275 6.65241 6.78652 7.02719 7.13908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.057 4.057 3 Si 0.791 3.209 4 C -0.311 4.311 5 C 0.171 3.829 6 N -0.749 5.749 7 C 0.122 3.878 8 C -0.123 4.123 9 C -0.041 4.041 10 C 0.524 3.476 11 O -0.578 6.578 12 N -0.724 5.724 13 C 0.142 3.858 14 H 0.068 0.932 15 C -0.122 4.122 16 C -0.144 4.144 17 C 0.104 3.896 18 H 0.068 0.932 19 O -0.587 6.587 20 C -0.110 4.110 21 C -0.115 4.115 22 H 0.373 0.627 23 H 0.043 0.957 24 H -0.245 1.245 25 H -0.304 1.304 26 H 0.157 0.843 27 H 0.412 0.588 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.408 0.592 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 4.251 4.793 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.166 4.166 3 Si 0.693 3.307 4 C -0.322 4.322 5 C 0.048 3.952 6 N -0.379 5.379 7 C -0.002 4.002 8 C -0.162 4.162 9 C -0.063 4.063 10 C 0.312 3.688 11 O -0.457 6.457 12 N -0.376 5.376 13 C 0.038 3.962 14 H 0.086 0.914 15 C -0.161 4.161 16 C -0.182 4.182 17 C 0.045 3.955 18 H 0.086 0.914 19 O -0.395 6.395 20 C -0.148 4.148 21 C -0.153 4.153 22 H 0.222 0.778 23 H 0.060 0.940 24 H -0.170 1.170 25 H -0.232 1.232 26 H 0.174 0.826 27 H 0.247 0.753 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.245 0.755 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.164 4.530 4.492 6.485 hybrid contribution -0.859 -1.555 -0.946 2.013 sum 0.305 2.975 3.546 4.638 Atomic orbital electron populations 1.86656 1.17904 1.34319 1.97028 1.25194 0.83849 1.12389 0.95147 0.92172 0.77916 0.75236 0.85414 1.20189 0.96402 1.16822 0.98769 1.20546 0.98763 0.90630 0.85277 1.44695 1.07555 1.63724 1.21880 1.21649 0.81369 1.01406 0.95801 1.21734 1.02086 0.97123 0.95223 1.19746 0.96351 0.99133 0.91030 1.21060 0.75637 0.85177 0.86927 1.90676 1.54640 1.20229 1.80190 1.46303 1.59433 1.16865 1.14961 1.21003 0.94795 0.98679 0.81760 0.91409 1.21800 0.97778 1.01636 0.94853 1.22176 0.99051 1.00474 0.96515 1.21875 0.93990 0.96500 0.83114 0.91419 1.86483 1.45183 1.85406 1.22419 1.21413 0.97753 1.02145 0.93534 1.21715 0.97095 1.00423 0.96068 0.77796 0.93959 1.16976 1.23160 0.82620 0.75264 0.90667 0.88538 0.92655 0.89952 0.87818 0.75489 0.93291 0.90820 0.90342 0.92236 0.75621 0.92005 0.90070 0.89460 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.96 11.28 -148.98 -1.68 -2.64 16 2 C -0.06 -0.10 2.49 71.24 0.18 0.08 16 3 Si 0.79 -0.53 32.74 68.60 2.25 1.72 16 4 C -0.31 -0.11 4.08 -16.76 -0.07 -0.18 16 5 C 0.17 -0.39 10.10 83.41 0.84 0.45 16 6 N -0.75 3.39 5.83 -346.04 -2.02 1.38 16 7 C 0.12 -0.61 7.16 86.43 0.62 0.01 16 8 C -0.12 -0.03 5.30 30.76 0.16 0.13 16 9 C -0.04 -0.04 2.32 -12.43 -0.03 -0.06 16 10 C 0.52 3.18 5.19 87.66 0.45 3.64 16 11 O -0.58 -8.67 15.78 -3.04 -0.05 -8.72 16 12 N -0.72 -1.14 4.89 -442.53 -2.16 -3.30 16 13 C 0.14 0.33 2.46 44.99 0.11 0.44 16 14 H 0.07 0.51 7.58 -2.39 -0.02 0.49 16 15 C -0.12 -0.33 5.49 30.60 0.17 -0.16 16 16 C -0.14 -0.20 5.54 30.59 0.17 -0.03 16 17 C 0.10 0.05 3.47 30.59 0.11 0.16 16 18 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 19 O -0.59 -1.67 13.32 -148.98 -1.98 -3.65 16 20 C -0.11 -0.03 5.57 30.59 0.17 0.14 16 21 C -0.12 0.26 5.39 30.59 0.16 0.43 16 22 H 0.37 -0.89 8.72 -74.06 -0.65 -1.54 16 23 H 0.04 0.23 6.46 -2.39 -0.02 0.21 16 24 H -0.25 0.58 6.59 99.48 0.66 1.23 16 25 H -0.30 -2.09 7.11 99.48 0.71 -1.38 16 26 H 0.16 -0.76 6.77 -2.91 -0.02 -0.78 16 27 H 0.41 -3.31 8.96 -92.71 -0.83 -4.14 16 28 H 0.08 -0.52 8.14 -2.39 -0.02 -0.53 16 29 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.05 0.37 7.52 -2.39 -0.02 0.35 16 31 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.10 -0.35 7.99 -2.39 -0.02 -0.37 16 33 H 0.41 -1.12 7.72 -92.71 -0.72 -1.84 16 34 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 37 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.39 -1.91 9.08 -74.05 -0.67 -2.58 16 39 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 42 H 0.09 -0.43 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -17.77 330.59 -4.42 -22.19 By element: Atomic # 1 Polarization: -10.18 SS G_CDS: -1.83 Total: -12.01 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 3.05 Total: 5.04 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -4.18 Total: -1.93 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -3.71 Total: -15.01 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: 2.25 Total: 1.72 kcal Total: -17.77 -4.42 -22.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_15608500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.442 kcal (2) G-P(sol) polarization free energy of solvation -17.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds