Wall clock time and date at job start Sat Mar 6 2021 15:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86293 * 109.47008 * 2 1 4 4 C 1.50700 * 109.46556 * 240.00029 * 2 1 3 5 5 C 1.34502 * 125.48938 * 149.98138 * 4 2 1 6 6 C 1.46745 * 106.36496 * 180.02562 * 5 4 2 7 7 C 1.47272 * 126.97064 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99727 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99680 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99664 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46915 * 35.00835 * 10 9 7 12 12 C 1.53002 * 109.46729 * 155.00120 * 10 9 7 13 13 C 1.52997 * 109.46978 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47415 * 300.00098 * 13 12 10 15 15 H 1.09002 * 109.47070 * 300.00053 * 14 13 12 16 16 O 1.42898 * 109.47113 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.46817 * 59.99873 * 14 13 12 18 18 C 1.52992 * 109.47482 * 300.00014 * 17 14 13 19 19 C 1.36333 * 106.06407 * 0.24271 * 6 5 4 20 20 C 1.51003 * 126.79561 * 180.45651 * 19 6 5 21 21 C 1.53395 * 108.31356 * 163.85153 * 20 19 6 22 22 C 1.53155 * 109.03700 * 48.25736 * 21 20 19 23 23 C 1.53128 * 109.53373 * 290.42761 * 22 21 20 24 24 N 1.35212 * 108.65919 * 359.60289 * 19 6 5 25 25 H 0.96701 * 114.00142 * 299.99933 * 1 2 3 26 26 H 1.09002 * 109.46899 * 120.00486 * 2 1 3 27 27 H 1.48500 * 109.99841 * 178.68151 * 3 2 1 28 28 H 1.48498 * 110.00229 * 299.99833 * 3 2 1 29 29 H 1.07999 * 126.81463 * 0.04621 * 5 4 2 30 30 H 0.97000 * 119.99923 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.47097 * 60.00183 * 12 10 9 32 32 H 1.08998 * 109.47844 * 300.00398 * 12 10 9 33 33 H 1.09000 * 109.47140 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47497 * 60.00450 * 13 12 10 35 35 H 0.96708 * 113.99549 * 180.02562 * 16 14 13 36 36 H 1.09002 * 109.47153 * 60.00231 * 17 14 13 37 37 H 1.08998 * 109.47533 * 179.97438 * 17 14 13 38 38 H 1.09002 * 109.47103 * 300.00247 * 18 17 14 39 39 H 1.08996 * 109.47747 * 179.97438 * 18 17 14 40 40 H 1.09007 * 109.85948 * 44.03565 * 20 19 6 41 41 H 1.08996 * 109.52726 * 283.47655 * 20 19 6 42 42 H 1.08995 * 109.54290 * 288.39139 * 21 20 19 43 43 H 1.08994 * 109.61095 * 168.16868 * 21 20 19 44 44 H 1.08998 * 109.46017 * 170.40543 * 22 21 20 45 45 H 1.09002 * 109.45288 * 50.44440 * 22 21 20 46 46 H 1.09001 * 109.55985 * 291.14424 * 23 22 21 47 47 H 1.08997 * 109.56482 * 170.81186 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 3.0855 -0.4461 -1.8684 6 6 3.1548 -1.3769 -3.0007 7 6 4.2324 -1.4782 -3.9994 8 8 4.1591 -2.3014 -4.8916 9 7 5.2997 -0.6585 -3.9245 10 6 6.3719 -0.7596 -4.9176 11 1 5.9457 -1.0162 -5.8875 12 6 7.1006 0.5818 -5.0196 13 6 8.2208 0.4761 -6.0563 14 6 9.2099 -0.6105 -5.6295 15 1 9.6356 -0.3536 -4.6595 16 8 10.2558 -0.7096 -6.5982 17 6 8.4811 -1.9519 -5.5276 18 6 7.3609 -1.8462 -4.4909 19 6 2.0164 -2.1249 -2.9443 20 6 1.6157 -3.2347 -3.8867 21 6 0.4954 -4.0475 -3.2255 22 6 -0.5699 -3.0862 -2.6899 23 6 -0.0056 -2.3100 -1.4966 24 7 1.2884 -1.7250 -1.8774 25 1 -0.3933 0.4417 0.7651 26 1 1.7924 -0.5139 0.8900 27 1 3.5346 1.7702 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 3.8164 0.3024 -1.6002 30 1 5.3582 -0.0022 -3.2127 31 1 7.5267 0.8385 -4.0497 32 1 6.3960 1.3561 -5.3231 33 1 8.7403 1.4316 -6.1286 34 1 7.7952 0.2193 -7.0264 35 1 10.9206 -1.3810 -6.3918 36 1 8.0554 -2.2087 -6.4976 37 1 9.1857 -2.7261 -5.2240 38 1 7.7866 -1.5894 -3.5209 39 1 6.8414 -2.8017 -4.4185 40 1 2.4716 -3.8806 -4.0833 41 1 1.2561 -2.8063 -4.8222 42 1 0.9060 -4.6320 -2.4023 43 1 0.0467 -4.7166 -3.9596 44 1 -1.4448 -3.6538 -2.3730 45 1 -0.8559 -2.3870 -3.4756 46 1 0.1339 -2.9871 -0.6538 47 1 -0.6976 -1.5154 -1.2179 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_16915396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:24 Heat of formation + Delta-G solvation = -90.004442 kcal Electronic energy + Delta-G solvation = -28128.573925 eV Core-core repulsion = 24277.295268 eV Total energy + Delta-G solvation = -3851.278657 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.88106 -40.94565 -39.46425 -37.87941 -36.99465 -36.94398 -34.47826 -33.59040 -31.93833 -31.33657 -30.21590 -28.82924 -26.59492 -24.64220 -24.41055 -23.91563 -22.74180 -21.76473 -21.38215 -20.89110 -19.58709 -18.55967 -18.24536 -18.11827 -17.39442 -16.91330 -16.69957 -16.20236 -15.96004 -15.75063 -15.55484 -15.53331 -15.16185 -15.14260 -14.92702 -14.63742 -14.54860 -14.20186 -14.12489 -13.86569 -13.43719 -13.33654 -13.26556 -13.04051 -12.89674 -12.59515 -12.48877 -12.24283 -12.15687 -12.02944 -11.89579 -11.80711 -11.73207 -11.33898 -11.03647 -10.80889 -10.56386 -10.19165 -9.70734 -9.15013 -4.95388 0.58905 0.94463 1.36694 1.69550 1.75864 2.07646 2.25779 2.39443 3.14689 3.23678 3.48419 3.52345 3.54950 3.66056 3.68745 3.74591 3.78581 3.94786 4.01172 4.07732 4.15796 4.21709 4.25396 4.27128 4.33555 4.35619 4.36888 4.45046 4.50920 4.59970 4.66350 4.73452 4.79374 4.82368 4.87403 4.92264 4.92824 4.95807 5.03463 5.05723 5.07613 5.15226 5.19391 5.28304 5.45941 5.55952 5.93128 6.11896 6.52296 6.83717 6.83985 7.22043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.052 4.052 3 Si 0.806 3.194 4 C 0.026 3.974 5 C -0.192 4.192 6 C -0.259 4.259 7 C 0.590 3.410 8 O -0.584 6.584 9 N -0.715 5.715 10 C 0.146 3.854 11 H 0.064 0.936 12 C -0.114 4.114 13 C -0.110 4.110 14 C 0.105 3.895 15 H 0.071 0.929 16 O -0.588 6.588 17 C -0.143 4.143 18 C -0.120 4.120 19 C 0.103 3.897 20 C -0.053 4.053 21 C -0.123 4.123 22 C -0.134 4.134 23 C 0.098 3.902 24 N -0.423 5.423 25 H 0.409 0.591 26 H 0.101 0.899 27 H -0.279 1.279 28 H -0.311 1.311 29 H 0.157 0.843 30 H 0.409 0.591 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 2.129 9.167 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.161 4.161 3 Si 0.710 3.290 4 C -0.083 4.083 5 C -0.215 4.215 6 C -0.269 4.269 7 C 0.380 3.620 8 O -0.466 6.466 9 N -0.365 5.365 10 C 0.041 3.959 11 H 0.082 0.918 12 C -0.152 4.152 13 C -0.148 4.148 14 C 0.046 3.954 15 H 0.089 0.911 16 O -0.396 6.396 17 C -0.182 4.182 18 C -0.158 4.158 19 C -0.015 4.015 20 C -0.091 4.091 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.021 4.021 24 N -0.099 5.099 25 H 0.262 0.738 26 H 0.119 0.881 27 H -0.206 1.206 28 H -0.240 1.240 29 H 0.175 0.825 30 H 0.245 0.755 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.131 0.869 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.872 2.183 7.463 8.289 hybrid contribution 0.528 -0.832 -0.059 0.988 sum -2.344 1.351 7.404 7.882 Atomic orbital electron populations 1.86315 1.16776 1.82410 1.51966 1.24607 0.86132 1.10727 0.94607 0.94536 0.77778 0.72355 0.84319 1.20316 0.94806 0.94105 0.99106 1.21808 0.99340 1.03192 0.97202 1.19977 0.98463 1.06209 1.02212 1.17522 0.81305 0.79938 0.83241 1.90729 1.80243 1.38340 1.37272 1.45748 1.20299 1.38467 1.31975 1.21000 0.86688 0.96434 0.91753 0.91769 1.21696 0.97163 0.95401 1.00911 1.21413 0.95327 0.99197 0.98910 1.21871 0.87513 0.94233 0.91770 0.91072 1.86481 1.39040 1.63113 1.50969 1.22177 0.98058 0.98561 0.99376 1.21781 0.95883 0.98491 0.99685 1.20654 0.91581 0.98304 0.90992 1.20458 0.99780 0.93239 0.95628 1.21706 0.95204 0.97837 1.01325 1.21941 0.99567 0.98637 0.97051 1.22491 0.81653 0.99317 0.98619 1.44134 1.18110 1.26857 1.20757 0.73785 0.88138 1.20556 1.23970 0.82537 0.75492 0.89138 0.90188 0.90116 0.92229 0.75577 0.92452 0.90090 0.90172 0.93286 0.89934 0.90315 0.91168 0.88933 0.86870 0.91632 0.89048 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.10 9.97 -148.98 -1.49 1.61 16 2 C -0.05 0.18 2.99 71.24 0.21 0.39 16 3 Si 0.81 -3.75 31.22 68.60 2.14 -1.61 16 4 C 0.03 0.13 6.18 40.99 0.25 0.38 16 5 C -0.19 -1.27 9.09 23.64 0.21 -1.06 16 6 C -0.26 -2.85 6.28 -19.12 -0.12 -2.97 16 7 C 0.59 7.43 7.77 86.62 0.67 8.10 16 8 O -0.58 -11.03 15.00 -4.10 -0.06 -11.09 16 9 N -0.71 -4.15 5.07 -445.94 -2.26 -6.41 16 10 C 0.15 0.67 2.46 44.99 0.11 0.79 16 11 H 0.06 0.66 7.58 -2.39 -0.02 0.64 16 12 C -0.11 0.06 5.39 30.59 0.16 0.22 16 13 C -0.11 -0.16 5.57 30.59 0.17 0.01 16 14 C 0.10 0.09 3.47 30.59 0.11 0.20 16 15 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 16 O -0.59 -1.85 13.32 -148.98 -1.98 -3.84 16 17 C -0.14 -0.26 5.54 30.59 0.17 -0.09 16 18 C -0.12 -0.42 5.49 30.59 0.17 -0.25 16 19 C 0.10 1.00 6.57 41.69 0.27 1.27 16 20 C -0.05 -0.38 5.32 30.08 0.16 -0.22 16 21 C -0.12 -0.05 5.98 30.78 0.18 0.14 16 22 C -0.13 0.26 5.92 30.69 0.18 0.44 16 23 C 0.10 -0.02 6.21 86.32 0.54 0.52 16 24 N -0.42 -2.48 3.11 -493.61 -1.54 -4.01 16 25 H 0.41 -6.55 8.74 -74.06 -0.65 -7.20 16 26 H 0.10 -0.76 7.96 -2.39 -0.02 -0.77 16 27 H -0.28 0.19 6.88 99.48 0.68 0.88 16 28 H -0.31 -1.67 7.11 99.48 0.71 -0.96 16 29 H 0.16 0.39 6.37 -2.91 -0.02 0.37 16 30 H 0.41 0.39 7.73 -92.71 -0.72 -0.32 16 31 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.08 0.06 8.14 -2.39 -0.02 0.05 16 34 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.39 -1.90 9.08 -74.05 -0.67 -2.58 16 36 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.08 0.85 7.40 -2.38 -0.02 0.84 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.02 8.12 -2.39 -0.02 0.00 16 43 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 45 H 0.06 0.02 8.11 -2.39 -0.02 0.00 16 46 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.12 -0.12 5.94 -2.39 -0.01 -0.13 16 Total: 0.00 -24.24 364.80 -2.75 -26.99 By element: Atomic # 1 Polarization: -8.48 SS G_CDS: -1.02 Total: -9.50 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 3.46 Total: 7.86 kcal Atomic # 7 Polarization: -6.63 SS G_CDS: -3.80 Total: -10.42 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -3.53 Total: -13.32 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.14 Total: -1.61 kcal Total: -24.24 -2.75 -26.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_16915396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.017 kcal (2) G-P(sol) polarization free energy of solvation -24.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds