Wall clock time and date at job start Sat Mar 6 2021 15:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47082 * 2 1 4 4 C 1.50697 * 109.47393 * 239.99839 * 2 1 3 5 5 C 1.38715 * 120.02923 * 285.00093 * 4 2 1 6 6 O 1.35905 * 120.05074 * 359.97438 * 5 4 2 7 7 C 1.42901 * 116.99604 * 179.72595 * 6 5 4 8 8 C 1.50704 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21274 * 119.99890 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99752 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47072 * 34.99881 * 11 10 8 13 13 C 1.52996 * 109.47308 * 155.00252 * 11 10 8 14 14 C 1.52998 * 109.47362 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46965 * 299.99782 * 14 13 11 16 16 H 1.09003 * 109.47308 * 300.00062 * 15 14 13 17 17 O 1.42902 * 109.47439 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47223 * 59.99801 * 15 14 13 19 19 C 1.52998 * 109.47157 * 300.00348 * 18 15 14 20 20 C 1.38751 * 119.88999 * 179.72445 * 5 4 2 21 21 C 1.38121 * 119.94246 * 0.27515 * 20 5 4 22 22 C 1.38282 * 120.05845 * 0.02562 * 21 20 5 23 23 C 1.38164 * 120.03119 * 105.32306 * 4 2 1 24 24 H 0.96700 * 114.00374 * 300.00197 * 1 2 3 25 25 H 1.09003 * 109.46970 * 119.99964 * 2 1 3 26 26 H 1.48507 * 109.99936 * 178.67675 * 3 2 1 27 27 H 1.48506 * 110.00320 * 299.99696 * 3 2 1 28 28 H 1.08996 * 109.47352 * 299.99771 * 7 6 5 29 29 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 30 30 H 0.96995 * 120.00267 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.46887 * 300.00145 * 13 11 10 32 32 H 1.08998 * 109.47357 * 59.99803 * 13 11 10 33 33 H 1.08998 * 109.47257 * 59.99483 * 14 13 11 34 34 H 1.08997 * 109.47464 * 179.97438 * 14 13 11 35 35 H 0.96702 * 114.00317 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.47087 * 60.00246 * 18 15 14 37 37 H 1.09003 * 109.47207 * 179.97438 * 18 15 14 38 38 H 1.09003 * 109.46941 * 299.99474 * 19 18 15 39 39 H 1.08997 * 109.46771 * 180.02562 * 19 18 15 40 40 H 1.08002 * 120.02961 * 180.29868 * 20 5 4 41 41 H 1.08007 * 119.96925 * 180.02562 * 21 20 5 42 42 H 1.08002 * 119.94739 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.96792 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.8698 -2.0941 -1.3069 6 8 1.3568 -2.8107 -0.2723 7 6 1.3191 -4.2313 -0.4229 8 6 0.7237 -4.8519 0.8146 9 8 0.3672 -4.1472 1.7350 10 7 0.5873 -6.1901 0.8984 11 6 0.0090 -6.7935 2.1016 12 1 -0.7655 -6.1384 2.5003 13 6 -0.6030 -8.1504 1.7480 14 6 -1.2076 -8.7803 3.0044 15 6 -0.1126 -8.9732 4.0555 16 1 0.6620 -9.6285 3.6573 17 8 -0.6771 -9.5620 5.2289 18 6 0.4995 -7.6163 4.4092 19 6 1.1039 -6.9864 3.1527 20 6 2.3279 -2.7448 -2.4435 21 6 2.8492 -2.0142 -3.4933 22 6 2.9153 -0.6353 -3.4121 23 6 2.4599 0.0154 -2.2805 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5138 0.8900 26 1 3.5346 1.7702 0.0322 27 1 1.5615 2.4679 -1.2086 28 1 0.7089 -4.4888 -1.2885 29 1 2.3316 -4.6084 -0.5669 30 1 0.8728 -6.7538 0.1625 31 1 -1.3834 -8.0130 0.9994 32 1 0.1715 -8.8056 1.3493 33 1 -1.9821 -8.1250 3.4027 34 1 -1.6440 -9.7468 2.7524 35 1 -0.0384 -9.7139 5.9390 36 1 -0.2751 -6.9610 4.8075 37 1 1.2792 -7.7536 5.1584 38 1 1.8786 -7.6417 2.7545 39 1 1.5404 -6.0200 3.4049 40 1 2.2765 -3.8217 -2.5074 41 1 3.2056 -2.5203 -4.3784 42 1 3.3237 -0.0658 -4.2339 43 1 2.5126 1.0924 -2.2195 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_2989392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:27 Heat of formation + Delta-G solvation = -131.289390 kcal Electronic energy + Delta-G solvation = -25406.680773 eV Core-core repulsion = 21611.430823 eV Total energy + Delta-G solvation = -3795.249950 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73399 -40.99317 -39.66983 -38.51939 -37.51390 -36.99692 -34.61656 -32.98249 -31.91023 -31.49856 -30.35542 -28.39306 -26.70130 -24.07085 -23.89419 -22.99744 -22.55102 -21.64164 -20.97698 -19.42564 -18.49858 -18.43507 -18.19929 -17.50067 -17.42355 -17.10910 -16.83620 -16.22358 -15.78769 -15.65860 -15.51690 -15.33600 -15.07384 -14.82139 -14.73241 -14.22669 -14.10638 -13.81141 -13.63442 -13.38780 -13.28877 -13.10482 -12.99282 -12.75010 -12.49542 -12.23712 -12.19601 -12.03336 -11.83390 -11.78522 -11.32211 -11.04749 -10.79330 -10.28160 -10.21057 -10.12019 -9.34459 -4.98096 0.07354 0.26905 1.26308 1.39837 1.41233 1.59826 1.88580 2.49870 2.54540 3.24137 3.42546 3.50342 3.57903 3.66955 3.67268 3.83839 3.92730 3.99017 4.00658 4.05008 4.08952 4.14812 4.18512 4.21430 4.26839 4.36653 4.39163 4.40505 4.52685 4.61634 4.83860 4.85635 4.91949 4.98545 5.06502 5.09334 5.14532 5.21069 5.22130 5.26898 5.35959 5.40182 5.60079 6.18099 6.42381 6.84557 6.85364 7.09034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.079 4.079 3 Si 0.781 3.219 4 C -0.137 4.137 5 C 0.133 3.867 6 O -0.308 6.308 7 C 0.034 3.966 8 C 0.514 3.486 9 O -0.567 6.567 10 N -0.705 5.705 11 C 0.145 3.855 12 H 0.061 0.939 13 C -0.112 4.112 14 C -0.113 4.113 15 C 0.103 3.897 16 H 0.073 0.927 17 O -0.590 6.590 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.207 4.207 21 C -0.072 4.072 22 C -0.158 4.158 23 C -0.105 4.105 24 H 0.396 0.604 25 H 0.064 0.936 26 H -0.285 1.285 27 H -0.281 1.281 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.422 0.578 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -4.806 -2.695 6.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.188 4.188 3 Si 0.685 3.315 4 C -0.138 4.138 5 C 0.087 3.913 6 O -0.221 6.221 7 C -0.044 4.044 8 C 0.300 3.700 9 O -0.445 6.445 10 N -0.359 5.359 11 C 0.041 3.959 12 H 0.080 0.920 13 C -0.150 4.150 14 C -0.152 4.152 15 C 0.045 3.955 16 H 0.091 0.909 17 O -0.398 6.398 18 C -0.184 4.184 19 C -0.160 4.160 20 C -0.226 4.226 21 C -0.090 4.090 22 C -0.176 4.176 23 C -0.122 4.122 24 H 0.246 0.754 25 H 0.082 0.918 26 H -0.212 1.212 27 H -0.208 1.208 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.260 0.740 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.166 0.834 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.283 -3.945 -3.168 6.032 hybrid contribution 0.589 -0.630 0.023 0.863 sum 3.873 -4.576 -3.145 6.770 Atomic orbital electron populations 1.86440 1.17681 1.82569 1.50553 1.24859 0.85674 1.11609 0.96633 0.94148 0.77455 0.75111 0.84791 1.19054 1.05651 0.91490 0.97602 1.18990 0.93861 0.90757 0.87691 1.86165 1.77905 1.18912 1.39079 1.22759 1.04632 0.79651 0.97308 1.20465 0.78309 0.83084 0.88166 1.90760 1.50044 1.62528 1.41185 1.45717 1.63865 1.05502 1.20834 1.21011 0.95193 0.94864 0.84877 0.92023 1.21694 1.01702 0.93931 0.97634 1.21440 0.97691 1.01854 0.94171 1.21911 0.95286 0.92454 0.85852 0.90872 1.86485 1.41825 1.83902 1.27627 1.22190 1.00772 0.97429 0.98039 1.21801 0.98316 1.00834 0.95094 1.21684 1.05028 1.02190 0.93652 1.21427 0.95392 0.93587 0.98618 1.21375 1.02350 0.95699 0.98157 1.21012 0.98403 0.99308 0.93510 0.75354 0.91790 1.21218 1.20834 0.86139 0.85713 0.74044 0.89655 0.88483 0.92491 0.90153 0.75617 0.92737 0.90261 0.89480 0.93351 0.81800 0.82045 0.83391 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.04 12.86 -148.98 -1.92 -6.96 16 2 C -0.08 -0.62 2.37 71.23 0.17 -0.45 16 3 Si 0.78 1.95 30.19 68.60 2.07 4.02 16 4 C -0.14 -1.37 5.31 -19.77 -0.10 -1.48 16 5 C 0.13 1.04 6.66 22.51 0.15 1.19 16 6 O -0.31 -2.82 9.00 -73.44 -0.66 -3.48 16 7 C 0.03 -0.04 5.22 71.24 0.37 0.34 16 8 C 0.51 2.00 7.87 87.66 0.69 2.69 16 9 O -0.57 -8.77 16.16 16.03 0.26 -8.52 16 10 N -0.71 2.71 5.08 -442.55 -2.25 0.46 16 11 C 0.14 -0.19 2.45 44.99 0.11 -0.08 16 12 H 0.06 0.34 7.58 -2.39 -0.02 0.32 16 13 C -0.11 0.68 5.39 30.59 0.16 0.85 16 14 C -0.11 0.23 5.57 30.59 0.17 0.40 16 15 C 0.10 -0.21 3.47 30.59 0.11 -0.10 16 16 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 17 O -0.59 -0.74 13.32 -148.98 -1.98 -2.72 16 18 C -0.15 0.17 5.55 30.59 0.17 0.34 16 19 C -0.12 0.15 5.50 30.59 0.17 0.32 16 20 C -0.21 -0.19 9.04 22.36 0.20 0.01 16 21 C -0.07 0.01 10.04 22.25 0.22 0.24 16 22 C -0.16 -0.46 10.04 22.28 0.22 -0.24 16 23 C -0.10 -0.80 8.66 22.25 0.19 -0.60 16 24 H 0.40 -0.38 8.74 -74.06 -0.65 -1.03 16 25 H 0.06 0.55 7.83 -2.39 -0.02 0.53 16 26 H -0.29 -2.04 7.11 99.48 0.71 -1.33 16 27 H -0.28 -2.04 6.76 99.48 0.67 -1.37 16 28 H 0.12 -0.81 7.66 -2.39 -0.02 -0.83 16 29 H 0.13 -0.98 7.66 -2.39 -0.02 -1.00 16 30 H 0.42 -5.03 8.60 -92.71 -0.80 -5.83 16 31 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.39 -2.56 9.08 -74.06 -0.67 -3.23 16 36 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.05 0.20 8.14 -2.39 -0.02 0.19 16 40 H 0.16 -1.12 6.30 -2.91 -0.02 -1.14 16 41 H 0.16 -1.10 8.06 -2.91 -0.02 -1.12 16 42 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 43 H 0.12 0.84 4.90 -2.91 -0.01 0.83 16 Total: 0.00 -29.30 351.34 -2.54 -31.84 By element: Atomic # 1 Polarization: -17.00 SS G_CDS: -1.07 Total: -18.06 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 3.01 Total: 3.41 kcal Atomic # 7 Polarization: 2.71 SS G_CDS: -2.25 Total: 0.46 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -4.30 Total: -21.67 kcal Atomic # 14 Polarization: 1.95 SS G_CDS: 2.07 Total: 4.02 kcal Total: -29.30 -2.54 -31.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_2989392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.448 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds