Wall clock time and date at job start Sat Mar 6 2021 15:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.38273 * 119.94059 * 119.73091 * 4 2 1 6 6 C 1.38148 * 120.05257 * 179.72295 * 5 4 2 7 7 C 1.38728 * 119.94510 * 0.54976 * 6 5 4 8 8 O 1.35895 * 120.05685 * 179.74584 * 7 6 5 9 9 C 1.42904 * 116.99898 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47038 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47232 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99741 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00041 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00126 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.46701 * 325.00270 * 14 13 11 16 16 C 1.53001 * 109.46954 * 84.99824 * 14 13 11 17 17 C 1.53003 * 109.46662 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46930 * 299.99649 * 17 16 14 19 19 H 1.09003 * 109.47574 * 300.00441 * 18 17 16 20 20 O 1.42904 * 109.47063 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46809 * 60.00545 * 18 17 16 22 22 C 1.52995 * 109.47373 * 205.00468 * 14 13 11 23 23 C 1.38729 * 119.88775 * 359.72544 * 7 6 5 24 24 C 1.38143 * 119.94836 * 359.97438 * 23 7 6 25 25 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 26 26 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 27 27 H 1.48498 * 109.99634 * 298.68172 * 3 2 1 28 28 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 29 29 H 1.07998 * 119.96907 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.02290 * 180.27084 * 6 5 4 31 31 H 1.09000 * 109.46832 * 299.99752 * 9 8 7 32 32 H 1.08999 * 109.47101 * 60.00169 * 9 8 7 33 33 H 1.09005 * 109.47133 * 299.99932 * 10 9 8 34 34 H 1.08999 * 109.47163 * 60.00052 * 10 9 8 35 35 H 0.97003 * 120.00160 * 0.02562 * 13 11 10 36 36 H 1.08996 * 109.47476 * 300.00298 * 16 14 13 37 37 H 1.09003 * 109.47053 * 60.00661 * 16 14 13 38 38 H 1.08999 * 109.46684 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.47582 * 59.99772 * 17 16 14 40 40 H 0.96694 * 113.99869 * 60.00379 * 20 18 17 41 41 H 1.09004 * 109.46868 * 179.97438 * 21 18 17 42 42 H 1.09000 * 109.47088 * 60.00162 * 21 18 17 43 43 H 1.09003 * 109.47045 * 299.99591 * 22 14 13 44 44 H 1.08992 * 109.47148 * 59.99402 * 22 14 13 45 45 H 1.08003 * 120.03099 * 180.02562 * 23 7 6 46 46 H 1.07996 * 119.97787 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7216 -0.0358 -2.1427 6 6 3.1881 -0.6865 -3.2685 7 6 2.8536 -2.0146 -3.4892 8 8 3.3069 -2.6554 -4.5985 9 6 4.1234 -1.9002 -5.4958 10 6 4.5344 -2.7823 -6.6765 11 6 5.3949 -1.9857 -7.6231 12 8 5.6543 -0.8267 -7.3773 13 7 5.8770 -2.5615 -8.7421 14 6 6.7140 -1.7872 -9.6621 15 1 6.3702 -0.7531 -9.6831 16 6 8.1682 -1.8317 -9.1886 17 6 9.0422 -1.0226 -10.1491 18 6 8.9447 -1.6208 -11.5540 19 1 9.2886 -2.6549 -11.5334 20 8 9.7615 -0.8654 -12.4510 21 6 7.4905 -1.5763 -12.0274 22 6 6.6164 -2.3857 -11.0668 23 6 2.0559 -2.6877 -2.5753 24 6 1.5970 -2.0344 -1.4479 25 1 -0.3932 0.4417 -0.7651 26 1 1.7923 -0.5139 0.8900 27 1 1.5880 2.4585 -1.2242 28 1 1.5616 2.4678 1.2085 29 1 2.9777 0.9995 -1.9728 30 1 3.8089 -0.1603 -3.9785 31 1 3.5615 -1.0413 -5.8628 32 1 5.0148 -1.5545 -4.9724 33 1 5.0962 -3.6415 -6.3098 34 1 3.6428 -3.1276 -7.1997 35 1 5.6699 -3.4886 -8.9385 36 1 8.2378 -1.4054 -8.1880 37 1 8.5120 -2.8659 -9.1677 38 1 10.0783 -1.0547 -9.8121 39 1 8.6983 0.0114 -10.1698 40 1 10.6982 -0.8502 -12.2118 41 1 7.4211 -2.0020 -13.0285 42 1 7.1466 -0.5421 -12.0482 43 1 6.9602 -3.4199 -11.0459 44 1 5.5804 -2.3540 -11.4040 45 1 1.7944 -3.7218 -2.7446 46 1 0.9763 -2.5580 -0.7359 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:34 Heat of formation + Delta-G solvation = -143.088796 kcal Electronic energy + Delta-G solvation = -26332.018961 eV Core-core repulsion = 22380.719732 eV Total energy + Delta-G solvation = -3951.299230 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47389 -41.06206 -39.70382 -39.15031 -37.32962 -37.01301 -34.56123 -33.32357 -32.05609 -31.88951 -31.47583 -29.40208 -26.58773 -25.57051 -23.90467 -23.74857 -22.87190 -22.17468 -21.50690 -20.87132 -19.51988 -18.45272 -18.24074 -17.79348 -17.56066 -17.47062 -16.97243 -16.40061 -16.26235 -16.13553 -15.89952 -15.58685 -15.50905 -14.90808 -14.77713 -14.73664 -14.48013 -14.31324 -14.18860 -13.95176 -13.49575 -13.37212 -13.27172 -13.05139 -12.90490 -12.78073 -12.44919 -12.29953 -12.19842 -12.07144 -11.79652 -11.76343 -11.62011 -11.30816 -11.05967 -10.78245 -10.61521 -10.13401 -10.04809 -9.22937 -4.94184 0.26909 0.29647 1.30906 1.52096 1.57820 1.69145 1.93157 2.46300 2.64240 3.26838 3.42196 3.54185 3.59055 3.69099 3.71005 3.81831 3.87559 3.89906 3.99279 4.01832 4.11357 4.19544 4.25043 4.28607 4.33275 4.38980 4.41792 4.45217 4.56510 4.63145 4.67213 4.68511 4.78395 4.86976 4.94747 4.96861 5.00394 5.07876 5.10212 5.17134 5.22689 5.27705 5.31057 5.46089 5.48050 5.71162 6.30958 6.47042 6.48039 6.85267 7.16509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.758 3.242 4 C -0.159 4.159 5 C -0.080 4.080 6 C -0.210 4.210 7 C 0.123 3.877 8 O -0.321 6.321 9 C 0.073 3.927 10 C -0.132 4.132 11 C 0.519 3.481 12 O -0.583 6.583 13 N -0.711 5.711 14 C 0.143 3.857 15 H 0.064 0.936 16 C -0.121 4.121 17 C -0.146 4.146 18 C 0.103 3.897 19 H 0.071 0.929 20 O -0.590 6.590 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.158 4.158 24 C -0.059 4.059 25 H 0.385 0.615 26 H 0.127 0.873 27 H -0.287 1.287 28 H -0.302 1.302 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.420 0.580 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.394 0.606 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -5.412 -2.443 6.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.183 4.183 3 Si 0.664 3.336 4 C -0.159 4.159 5 C -0.097 4.097 6 C -0.229 4.229 7 C 0.078 3.922 8 O -0.235 6.235 9 C -0.003 4.003 10 C -0.172 4.172 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.363 5.363 14 C 0.038 3.962 15 H 0.082 0.918 16 C -0.160 4.160 17 C -0.184 4.184 18 C 0.044 3.956 19 H 0.089 0.911 20 O -0.399 6.399 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.177 4.177 24 C -0.077 4.077 25 H 0.234 0.766 26 H 0.145 0.855 27 H -0.214 1.214 28 H -0.230 1.230 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.257 0.743 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.244 0.756 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.160 0.840 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.769 -4.197 -2.106 5.452 hybrid contribution -0.545 -0.046 -0.315 0.631 sum 2.225 -4.243 -2.421 5.368 Atomic orbital electron populations 1.86561 1.18611 1.80295 1.50171 1.25094 0.83301 1.11258 0.98661 0.94159 0.90594 0.72578 0.76240 1.20260 1.01992 0.95566 0.98126 1.20993 0.95909 0.99900 0.92941 1.21408 1.05987 0.94418 1.01070 1.19186 0.94503 0.91405 0.87126 1.85957 1.65247 1.40701 1.31552 1.22456 0.94120 0.94127 0.89595 1.21439 1.01956 0.99537 0.94230 1.20666 0.79591 0.86944 0.82149 1.90742 1.60881 1.19320 1.75397 1.45906 1.51548 1.16656 1.22210 1.20986 0.90101 0.95955 0.89117 0.91824 1.21798 0.94189 1.01478 0.98538 1.22189 1.00904 0.99878 0.95448 1.21917 0.91465 0.94558 0.87638 0.91072 1.86483 1.24140 1.75571 1.53688 1.21446 0.92937 1.01001 0.99757 1.21697 1.01131 1.00589 0.91664 1.20675 1.00887 1.01616 0.94486 1.20980 0.96999 0.93653 0.96046 0.76565 0.85549 1.21374 1.23007 0.83986 0.84339 0.91868 0.91473 0.85360 0.85566 0.74280 0.92983 0.89793 0.90331 0.92625 0.75637 0.90385 0.92410 0.88836 0.89768 0.83977 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.84 12.77 -148.98 -1.90 -3.74 16 2 C -0.07 -0.03 2.82 71.24 0.20 0.17 16 3 Si 0.76 -0.31 29.78 68.60 2.04 1.73 16 4 C -0.16 -0.24 5.39 -19.85 -0.11 -0.35 16 5 C -0.08 -0.11 8.66 22.26 0.19 0.09 16 6 C -0.21 -0.60 9.04 22.37 0.20 -0.40 16 7 C 0.12 0.49 6.69 22.50 0.15 0.64 16 8 O -0.32 -0.92 10.14 -92.37 -0.94 -1.85 16 9 C 0.07 0.02 4.03 71.98 0.29 0.31 16 10 C -0.13 0.69 6.07 29.85 0.18 0.87 16 11 C 0.52 -0.11 7.79 87.66 0.68 0.58 16 12 O -0.58 -5.35 15.65 -3.04 -0.05 -5.40 16 13 N -0.71 3.78 5.08 -442.53 -2.25 1.53 16 14 C 0.14 -0.37 2.45 44.99 0.11 -0.26 16 15 H 0.06 0.23 7.58 -2.39 -0.02 0.21 16 16 C -0.12 0.29 5.49 30.60 0.17 0.46 16 17 C -0.15 0.29 5.55 30.60 0.17 0.46 16 18 C 0.10 -0.24 3.47 30.60 0.11 -0.14 16 19 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 20 O -0.59 -0.57 13.32 -148.98 -1.98 -2.55 16 21 C -0.11 0.26 5.58 30.61 0.17 0.43 16 22 C -0.11 0.73 5.39 30.60 0.17 0.89 16 23 C -0.16 -0.43 9.99 22.36 0.22 -0.21 16 24 C -0.06 -0.12 9.61 22.25 0.21 0.10 16 25 H 0.39 -0.70 8.70 -74.06 -0.64 -1.35 16 26 H 0.13 -0.19 7.96 -2.38 -0.02 -0.21 16 27 H -0.29 -1.11 7.10 99.48 0.71 -0.40 16 28 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 29 H 0.14 -0.32 4.87 -2.91 -0.01 -0.33 16 30 H 0.14 0.18 6.30 -2.91 -0.02 0.16 16 31 H 0.06 0.12 7.62 -2.39 -0.02 0.11 16 32 H 0.07 0.10 7.62 -2.39 -0.02 0.08 16 33 H 0.13 -1.17 8.14 -2.38 -0.02 -1.19 16 34 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 35 H 0.42 -5.03 8.60 -92.71 -0.80 -5.83 16 36 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.39 -2.66 9.08 -74.06 -0.67 -3.33 16 41 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 42 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 44 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.14 0.02 8.06 -2.91 -0.02 -0.01 16 46 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -21.08 372.97 -3.02 -24.10 By element: Atomic # 1 Polarization: -16.39 SS G_CDS: -1.07 Total: -17.45 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 3.12 Total: 3.64 kcal Atomic # 7 Polarization: 3.78 SS G_CDS: -2.25 Total: 1.53 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -4.87 Total: -13.55 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: 2.04 Total: 1.73 kcal Total: -21.08 -3.02 -24.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.986 kcal (2) G-P(sol) polarization free energy of solvation -21.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds