Wall clock time and date at job start Sat Mar 6 2021 15:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86295 * 109.47284 * 2 1 4 4 C 1.50697 * 109.47168 * 240.00237 * 2 1 3 5 5 C 1.38245 * 119.97518 * 119.99759 * 4 2 1 6 6 C 1.38288 * 120.11300 * 179.97438 * 5 4 2 7 7 C 1.38123 * 120.05549 * 0.04684 * 6 5 4 8 8 C 1.38754 * 119.94616 * 359.97311 * 7 6 5 9 9 O 1.35900 * 120.05479 * 180.02562 * 8 7 6 10 10 C 1.42891 * 117.00108 * 0.02562 * 9 8 7 11 11 C 1.50709 * 109.47305 * 179.97438 * 10 9 8 12 12 C 1.38336 * 119.92366 * 89.99892 * 11 10 9 13 13 C 1.38383 * 120.29026 * 180.02562 * 12 11 10 14 14 C 1.37936 * 120.14619 * 0.02562 * 13 12 11 15 15 C 1.39606 * 119.85358 * 359.97438 * 14 13 12 16 16 C 1.47835 * 120.14484 * 179.97438 * 15 14 13 17 17 O 1.21555 * 120.00268 * 179.97438 * 16 15 14 18 18 N 1.34777 * 120.00242 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00270 * 180.02562 * 18 16 15 20 20 H 1.09002 * 109.47129 * 34.99540 * 19 18 16 21 21 C 1.52997 * 109.47473 * 154.99797 * 19 18 16 22 22 C 1.53000 * 109.47060 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47233 * 299.99657 * 22 21 19 24 24 H 1.09002 * 109.47075 * 300.00932 * 23 22 21 25 25 O 1.42895 * 109.47308 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.46817 * 60.00194 * 23 22 21 27 27 C 1.52999 * 109.46944 * 275.00142 * 19 18 16 28 28 C 1.37981 * 119.92732 * 270.24193 * 11 10 9 29 29 C 1.38166 * 119.97132 * 300.29606 * 4 2 1 30 30 H 0.96696 * 114.00238 * 59.99966 * 1 2 3 31 31 H 1.09001 * 109.47396 * 120.00392 * 2 1 3 32 32 H 1.48503 * 110.00049 * 60.00218 * 3 2 1 33 33 H 1.48494 * 110.00304 * 181.32006 * 3 2 1 34 34 H 1.08001 * 119.94334 * 0.02562 * 5 4 2 35 35 H 1.08001 * 119.97405 * 180.02562 * 6 5 4 36 36 H 1.08005 * 120.02597 * 179.97438 * 7 6 5 37 37 H 1.09007 * 109.47350 * 60.00545 * 10 9 8 38 38 H 1.08993 * 109.47485 * 299.99805 * 10 9 8 39 39 H 1.07994 * 119.85926 * 0.02562 * 12 11 10 40 40 H 1.07996 * 119.92911 * 179.97438 * 13 12 11 41 41 H 1.07997 * 120.07697 * 179.97438 * 14 13 12 42 42 H 0.97000 * 120.00239 * 359.97438 * 18 16 15 43 43 H 1.09002 * 109.47153 * 59.99757 * 21 19 18 44 44 H 1.09001 * 109.46832 * 299.99948 * 21 19 18 45 45 H 1.08992 * 109.47399 * 59.99823 * 22 21 19 46 46 H 1.09004 * 109.46724 * 180.02562 * 22 21 19 47 47 H 0.96696 * 113.99976 * 180.02562 * 25 23 22 48 48 H 1.09002 * 109.47153 * 60.00231 * 26 23 22 49 49 H 1.09001 * 109.47289 * 180.02562 * 26 23 22 50 50 H 1.09000 * 109.47486 * 59.99569 * 27 19 18 51 51 H 1.09002 * 109.46716 * 299.99651 * 27 19 18 52 52 H 1.08001 * 120.07534 * 359.97438 * 28 11 10 53 53 H 1.08000 * 120.03078 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7260 -0.0379 -2.1401 6 6 3.1890 -0.6872 -3.2699 7 6 2.8575 -2.0094 -3.4927 8 6 2.0596 -2.6864 -2.5815 9 8 1.7325 -3.9875 -2.7983 10 6 2.2452 -4.5964 -3.9849 11 6 1.7824 -6.0289 -4.0549 12 6 0.5917 -6.3393 -4.6872 13 6 0.1592 -7.6520 -4.7554 14 6 0.9136 -8.6601 -4.1921 15 6 2.1162 -8.3537 -3.5527 16 6 2.9296 -9.4290 -2.9463 17 8 3.9765 -9.1593 -2.3905 18 7 2.5109 -10.7085 -3.0106 19 6 3.3167 -11.7740 -2.4092 20 1 3.7970 -11.4000 -1.5050 21 6 2.4144 -12.9577 -2.0550 22 6 3.2559 -14.0702 -1.4264 23 6 4.3260 -14.5244 -2.4212 24 1 3.8460 -14.8986 -3.3255 25 8 5.1115 -15.5638 -1.8343 26 6 5.2282 -13.3407 -2.7754 27 6 4.3864 -12.2279 -3.4044 28 6 2.5446 -7.0273 -3.4839 29 6 1.5921 -2.0313 -1.4517 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5139 0.8899 32 1 1.5615 2.4678 1.2085 33 1 3.5345 1.7702 -0.0321 34 1 2.9864 0.9959 -1.9677 35 1 3.8101 -0.1598 -3.9789 36 1 3.2190 -2.5158 -4.3755 37 1 3.3348 -4.5676 -3.9665 38 1 1.8821 -4.0538 -4.8577 39 1 -0.0029 -5.5537 -5.1294 40 1 -0.7714 -7.8877 -5.2500 41 1 0.5748 -9.6841 -4.2457 42 1 1.6757 -10.9238 -3.4544 43 1 1.9340 -13.3317 -2.9592 44 1 1.6523 -12.6343 -1.3460 45 1 3.7358 -13.6960 -0.5222 46 1 2.6131 -14.9137 -1.1745 47 1 5.8115 -15.9006 -2.4101 48 1 5.7082 -12.9664 -1.8711 49 1 5.9903 -13.6640 -3.4844 50 1 5.0292 -11.3846 -3.6568 51 1 3.9061 -12.6019 -4.3086 52 1 3.4722 -6.7832 -2.9876 53 1 0.9669 -2.5547 -0.7434 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_4549630.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:46 Heat of formation + Delta-G solvation = -107.055105 kcal Electronic energy + Delta-G solvation = -33783.573792 eV Core-core repulsion = 29165.394919 eV Total energy + Delta-G solvation = -4618.178872 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.66842 -41.28268 -40.21904 -39.43728 -38.83453 -37.26026 -37.05412 -34.80266 -33.38594 -32.46633 -32.25715 -31.91761 -31.08363 -29.44444 -27.72314 -26.63143 -25.24415 -23.92489 -23.67262 -23.18703 -22.98214 -22.13931 -21.45804 -20.87491 -19.23476 -18.95957 -18.23523 -17.85899 -17.69660 -17.30535 -17.18087 -16.97081 -16.92135 -16.42727 -16.18796 -16.08581 -15.70537 -15.56649 -15.50942 -15.23638 -14.93623 -14.81795 -14.80190 -14.51350 -14.23629 -14.20921 -13.93950 -13.55069 -13.46577 -13.39948 -13.30019 -13.04247 -12.92323 -12.80921 -12.59099 -12.49035 -12.22992 -12.19801 -12.03567 -11.95149 -11.79671 -11.65845 -11.34128 -11.15356 -10.81101 -10.53086 -10.31921 -10.05667 -9.97875 -9.93239 -9.27737 -5.00222 -0.29302 0.12997 0.19159 0.38376 1.28801 1.63663 1.64938 1.94049 1.95454 2.23248 2.66186 2.84830 3.23141 3.44365 3.50173 3.55943 3.58365 3.66146 3.66578 3.75301 3.83254 3.95449 3.97943 4.06189 4.06804 4.08615 4.16270 4.17446 4.22081 4.23531 4.25718 4.34174 4.38788 4.38950 4.47955 4.50857 4.60491 4.63616 4.70231 4.84001 4.86781 4.90896 4.96514 4.96930 5.04812 5.07722 5.15439 5.20384 5.24040 5.25898 5.28722 5.36134 5.37001 5.39899 5.43075 5.70040 5.76448 6.35215 6.39969 6.74367 6.84250 7.07045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.083 4.083 3 Si 0.793 3.207 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.208 4.208 8 C 0.116 3.884 9 O -0.328 6.328 10 C 0.099 3.901 11 C -0.114 4.114 12 C -0.068 4.068 13 C -0.125 4.125 14 C -0.068 4.068 15 C -0.157 4.157 16 C 0.556 3.444 17 O -0.583 6.583 18 N -0.706 5.706 19 C 0.142 3.858 20 H 0.062 0.938 21 C -0.113 4.113 22 C -0.113 4.113 23 C 0.104 3.896 24 H 0.074 0.926 25 O -0.589 6.589 26 C -0.145 4.145 27 C -0.121 4.121 28 C -0.056 4.056 29 C -0.148 4.148 30 H 0.396 0.604 31 H 0.102 0.898 32 H -0.299 1.299 33 H -0.284 1.284 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.416 0.584 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.394 0.606 48 H 0.054 0.946 49 H 0.080 0.920 50 H 0.048 0.952 51 H 0.086 0.914 52 H 0.116 0.884 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 -0.087 -9.720 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.192 4.192 3 Si 0.698 3.302 4 C -0.085 4.085 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.071 3.929 9 O -0.243 6.243 10 C 0.025 3.975 11 C -0.114 4.114 12 C -0.086 4.086 13 C -0.142 4.142 14 C -0.086 4.086 15 C -0.160 4.160 16 C 0.345 3.655 17 O -0.464 6.464 18 N -0.358 5.358 19 C 0.038 3.962 20 H 0.080 0.920 21 C -0.150 4.150 22 C -0.151 4.151 23 C 0.045 3.955 24 H 0.092 0.908 25 O -0.398 6.398 26 C -0.184 4.184 27 C -0.160 4.160 28 C -0.076 4.076 29 C -0.167 4.167 30 H 0.246 0.754 31 H 0.119 0.881 32 H -0.228 1.228 33 H -0.210 1.210 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.169 0.831 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.255 0.745 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.244 0.756 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.105 0.895 52 H 0.134 0.866 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.680 0.301 -7.756 8.590 hybrid contribution 0.712 -0.838 -0.056 1.101 sum -2.967 -0.536 -7.813 8.375 Atomic orbital electron populations 1.86467 1.17208 1.82278 1.50469 1.25366 0.85391 1.11623 0.96787 0.93534 0.77687 0.74412 0.84553 1.20225 0.97780 0.93515 0.96960 1.21187 1.00386 1.00744 0.95335 1.21296 0.97302 0.93496 0.96892 1.21583 1.02846 0.96977 1.01231 1.19190 0.95308 0.83423 0.94988 1.86130 1.71326 1.22831 1.44025 1.21747 0.99127 0.89701 0.86927 1.19529 0.96973 0.93403 1.01520 1.21662 0.93506 0.98282 0.95149 1.21540 1.01205 0.91787 0.99696 1.21709 0.91601 1.01636 0.93654 1.19891 0.97981 0.93185 1.04910 1.18586 0.84696 0.83561 0.78654 1.90774 1.25886 1.83805 1.45916 1.45825 1.26336 1.05312 1.58291 1.21045 0.92178 0.87046 0.95933 0.92019 1.21702 0.97467 0.92932 1.02946 1.21434 0.96859 0.98534 0.98251 1.21902 0.91176 0.86347 0.96033 0.90807 1.86483 1.50609 1.55031 1.47673 1.22202 0.98869 0.96107 1.01209 1.21805 0.97231 0.97836 0.99088 1.21162 0.99210 0.91915 0.95264 1.20292 1.04026 0.94847 0.97523 0.75418 0.88087 1.22756 1.21046 0.83438 0.82420 0.83370 0.90567 0.88371 0.83062 0.81666 0.82210 0.74497 0.88479 0.89777 0.92515 0.90069 0.75621 0.92748 0.90165 0.93358 0.89517 0.86621 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.51 12.76 -148.98 -1.90 -3.41 16 2 C -0.08 -0.17 2.82 71.24 0.20 0.03 16 3 Si 0.79 -1.14 29.79 68.60 2.04 0.90 16 4 C -0.08 -0.25 5.39 -19.88 -0.11 -0.36 16 5 C -0.16 0.09 8.67 22.28 0.19 0.29 16 6 C -0.07 0.11 10.04 22.25 0.22 0.34 16 7 C -0.21 -0.14 9.04 22.37 0.20 0.06 16 8 C 0.12 0.64 6.69 22.51 0.15 0.79 16 9 O -0.33 -2.16 10.12 -92.42 -0.94 -3.09 16 10 C 0.10 0.05 4.86 71.24 0.35 0.39 16 11 C -0.11 -0.20 5.50 -19.90 -0.11 -0.31 16 12 C -0.07 0.18 9.69 22.33 0.22 0.40 16 13 C -0.12 0.67 10.03 22.23 0.22 0.89 16 14 C -0.07 0.27 9.54 22.53 0.21 0.48 16 15 C -0.16 -0.54 5.87 -20.09 -0.12 -0.66 16 16 C 0.56 3.88 7.74 86.78 0.67 4.55 16 17 O -0.58 -9.58 16.01 -3.89 -0.06 -9.64 16 18 N -0.71 0.50 5.03 -445.42 -2.24 -1.74 16 19 C 0.14 0.07 2.45 44.99 0.11 0.18 16 20 H 0.06 0.44 7.58 -2.39 -0.02 0.42 16 21 C -0.11 0.52 5.39 30.59 0.16 0.69 16 22 C -0.11 0.12 5.57 30.60 0.17 0.29 16 23 C 0.10 -0.14 3.47 30.59 0.11 -0.03 16 24 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 25 O -0.59 -1.06 13.32 -148.98 -1.98 -3.04 16 26 C -0.15 0.05 5.55 30.61 0.17 0.22 16 27 C -0.12 -0.01 5.50 30.61 0.17 0.16 16 28 C -0.06 -0.33 9.24 22.53 0.21 -0.12 16 29 C -0.15 -0.99 9.55 22.37 0.21 -0.78 16 30 H 0.40 -2.34 8.70 -74.06 -0.64 -2.99 16 31 H 0.10 0.42 7.96 -2.39 -0.02 0.40 16 32 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 33 H -0.28 -0.80 7.11 99.48 0.71 -0.10 16 34 H 0.15 -0.77 4.87 -2.91 -0.01 -0.78 16 35 H 0.16 -1.16 8.06 -2.91 -0.02 -1.18 16 36 H 0.15 -0.56 6.30 -2.91 -0.02 -0.58 16 37 H 0.08 -0.04 7.61 -2.38 -0.02 -0.06 16 38 H 0.10 -0.45 7.60 -2.39 -0.02 -0.47 16 39 H 0.15 -1.07 8.06 -2.91 -0.02 -1.09 16 40 H 0.17 -1.89 8.06 -2.91 -0.02 -1.91 16 41 H 0.16 -1.79 6.41 -2.91 -0.02 -1.81 16 42 H 0.42 -3.35 6.64 -92.71 -0.62 -3.96 16 43 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.39 -2.36 9.08 -74.06 -0.67 -3.03 16 48 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 50 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 52 H 0.12 1.07 7.65 -2.91 -0.02 1.05 16 53 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 Total: 0.00 -28.15 429.75 -2.39 -30.55 By element: Atomic # 1 Polarization: -17.10 SS G_CDS: -0.93 Total: -18.03 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 3.62 Total: 7.51 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -2.24 Total: -1.74 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -4.88 Total: -19.18 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.04 Total: 0.90 kcal Total: -28.15 -2.39 -30.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_4549630.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.507 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds