Wall clock time and date at job start Sat Mar 6 2021 15:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36543 * 126.64724 * 2 1 4 4 C 1.46659 * 125.98748 * 359.97438 * 3 2 1 5 5 O 1.21697 * 119.99871 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00097 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00267 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.46570 * 324.99900 * 7 6 4 9 9 C 1.52999 * 109.47136 * 84.99276 * 7 6 4 10 10 C 1.52997 * 109.47381 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47123 * 300.00711 * 10 9 7 12 12 H 1.08998 * 109.47015 * 299.99761 * 11 10 9 13 13 O 1.42902 * 109.46859 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.47046 * 59.99447 * 11 10 9 15 15 C 1.52992 * 109.47225 * 205.00068 * 7 6 4 16 16 O 1.34911 * 108.02629 * 179.97438 * 3 2 1 17 17 C 1.33937 * 109.38053 * 0.02562 * 16 3 2 18 18 C 1.50703 * 125.61129 * 179.97438 * 17 16 3 19 19 O 1.42897 * 109.47158 * 270.02242 * 18 17 16 20 20 C 1.35900 * 117.00207 * 180.02562 * 19 18 17 21 21 C 1.38728 * 120.05417 * 180.02562 * 20 19 18 22 22 C 1.38154 * 119.93919 * 179.97438 * 21 20 19 23 23 C 1.38260 * 120.05718 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.94431 * 180.02562 * 23 22 21 25 25 O 1.42903 * 109.47278 * 300.00307 * 24 23 22 26 26 Si 1.86300 * 109.47355 * 180.02562 * 24 23 22 27 27 C 1.38268 * 120.11273 * 0.27901 * 23 22 21 28 28 C 1.38148 * 120.05255 * 359.44588 * 27 23 22 29 29 C 1.35124 * 108.77031 * 0.22451 * 17 16 3 30 30 H 1.09004 * 109.46759 * 90.00073 * 1 2 3 31 31 H 1.08997 * 109.47331 * 210.00349 * 1 2 3 32 32 H 1.09002 * 109.46705 * 330.00439 * 1 2 3 33 33 H 0.97004 * 119.99857 * 359.97438 * 6 4 3 34 34 H 1.08994 * 109.47689 * 300.00811 * 9 7 6 35 35 H 1.09006 * 109.46901 * 60.00119 * 9 7 6 36 36 H 1.08996 * 109.47610 * 180.02562 * 10 9 7 37 37 H 1.09006 * 109.47021 * 60.00174 * 10 9 7 38 38 H 0.96699 * 114.00094 * 60.00523 * 13 11 10 39 39 H 1.09008 * 109.46969 * 179.97438 * 14 11 10 40 40 H 1.09006 * 109.47197 * 60.00476 * 14 11 10 41 41 H 1.09008 * 109.46928 * 299.99318 * 15 7 6 42 42 H 1.08997 * 109.47749 * 59.99651 * 15 7 6 43 43 H 1.08998 * 109.46945 * 150.02207 * 18 17 16 44 44 H 1.09003 * 109.47249 * 30.02323 * 18 17 16 45 45 H 1.07990 * 120.03336 * 359.95350 * 21 20 19 46 46 H 1.07997 * 119.96817 * 179.97438 * 22 21 20 47 47 H 1.08997 * 109.47214 * 60.00282 * 24 23 22 48 48 H 0.96700 * 114.00022 * 180.02562 * 25 24 23 49 49 H 1.48506 * 110.00048 * 298.68478 * 26 24 23 50 50 H 1.48502 * 109.99996 * 59.99803 * 26 24 23 51 51 H 1.07999 * 119.97015 * 179.72707 * 27 23 22 52 52 H 1.08003 * 120.02568 * 180.27470 * 28 27 23 53 53 H 1.07999 * 126.44350 * 179.73692 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3221 1.0955 0.0000 4 6 1.8844 2.4953 -0.0005 5 8 0.6968 2.7614 -0.0015 6 7 2.7972 3.4868 -0.0010 7 6 2.3600 4.8850 -0.0021 8 1 1.4483 4.9801 -0.5919 9 6 2.0873 5.3352 1.4345 10 6 1.6301 6.7953 1.4334 11 6 2.7254 7.6723 0.8232 12 1 3.6372 7.5776 1.4128 13 8 2.2980 9.0359 0.8216 14 6 2.9980 7.2220 -0.6134 15 6 3.4557 5.7615 -0.6120 16 8 3.6006 0.6647 0.0006 17 6 3.6183 -0.6745 0.0004 18 6 4.8550 -1.5357 0.0003 19 8 5.2463 -1.8073 -1.3470 20 6 6.3517 -2.5776 -1.5251 21 6 6.7884 -2.8802 -2.8066 22 6 7.9127 -3.6630 -2.9850 23 6 8.6027 -4.1442 -1.8877 24 6 9.8291 -4.9974 -2.0852 25 8 9.4782 -6.1739 -2.8165 26 14 10.5222 -5.4823 -0.4253 27 6 8.1664 -3.8483 -0.6095 28 6 7.0460 -3.0612 -0.4258 29 6 2.3448 -1.1262 -0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 3.7438 3.2746 -0.0006 34 1 1.3067 4.7108 1.8691 35 1 2.9990 5.2401 2.0244 36 1 1.4362 7.1162 2.4568 37 1 0.7182 6.8900 0.8436 38 1 2.1067 9.3891 1.7012 39 1 3.7780 7.8471 -1.0482 40 1 2.0862 7.3167 -1.2031 41 1 4.3674 5.6665 -0.0222 42 1 3.6500 5.4408 -1.6355 43 1 4.6445 -2.4739 0.5136 44 1 5.6617 -1.0132 0.5146 45 1 6.2499 -2.5046 -3.6640 46 1 8.2529 -3.8993 -3.9824 47 1 10.5781 -4.4338 -2.6415 48 1 10.2208 -6.7713 -2.9803 49 1 10.9204 -4.2690 0.3329 50 1 9.5104 -6.2516 0.3425 51 1 8.7046 -4.2290 0.2460 52 1 6.7082 -2.8267 0.5729 53 1 2.0306 -2.1595 -0.0109 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_4549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:51 Heat of formation + Delta-G solvation = -116.198553 kcal Electronic energy + Delta-G solvation = -34932.360016 eV Core-core repulsion = 30123.328603 eV Total energy + Delta-G solvation = -4809.031414 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.181 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -44.01501 -41.42371 -41.15501 -39.62728 -39.22005 -37.24959 -37.15154 -35.43910 -34.55121 -33.31386 -32.21438 -31.94240 -31.71886 -29.95893 -28.91877 -27.85868 -26.19815 -24.41819 -23.95011 -23.65141 -22.78220 -22.28693 -22.10280 -21.39040 -20.69600 -19.60915 -19.30460 -18.37453 -18.24224 -17.83955 -17.60727 -17.55058 -17.00250 -16.77857 -16.62607 -16.28179 -15.89030 -15.76311 -15.57723 -15.46184 -15.30025 -14.88940 -14.77744 -14.56846 -14.39251 -14.23885 -14.12432 -14.09238 -13.92577 -13.80382 -13.58004 -13.45290 -13.41547 -13.31473 -13.09056 -12.90471 -12.53353 -12.51358 -12.24498 -12.20551 -12.07047 -11.86946 -11.83435 -11.41850 -11.31656 -10.88382 -10.82169 -10.37488 -10.29843 -10.18145 -9.78909 -9.33575 -4.93127 -0.33961 0.11696 0.17116 0.88537 1.26803 1.32207 1.64381 1.87992 1.89099 1.96700 2.26603 2.50571 3.17137 3.25150 3.42161 3.49638 3.55865 3.58044 3.59906 3.64134 3.73297 3.88931 3.93965 3.95208 3.98406 4.04461 4.14579 4.14946 4.21850 4.22720 4.31315 4.32925 4.36858 4.39023 4.42301 4.53756 4.57391 4.59815 4.67007 4.80264 4.81108 4.86293 4.90329 4.95317 5.00275 5.03398 5.03483 5.05855 5.09016 5.15761 5.17897 5.28513 5.35282 5.37136 5.55805 5.60502 6.15001 6.25383 6.83666 6.84921 6.92672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.092 4.092 4 C 0.603 3.397 5 O -0.543 6.543 6 N -0.705 5.705 7 C 0.143 3.857 8 H 0.074 0.926 9 C -0.122 4.122 10 C -0.144 4.144 11 C 0.103 3.897 12 H 0.070 0.930 13 O -0.588 6.588 14 C -0.111 4.111 15 C -0.114 4.114 16 O -0.159 6.159 17 C 0.010 3.990 18 C 0.135 3.865 19 O -0.322 6.322 20 C 0.126 3.874 21 C -0.156 4.156 22 C -0.056 4.056 23 C -0.128 4.128 24 C -0.075 4.075 25 O -0.565 6.565 26 Si 0.770 3.230 27 C -0.100 4.100 28 C -0.203 4.203 29 C -0.186 4.186 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.415 0.585 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.394 0.606 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.094 0.906 48 H 0.403 0.597 49 H -0.287 1.287 50 H -0.297 1.297 51 H 0.122 0.878 52 H 0.156 0.844 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -2.898 2.160 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.144 4.144 4 C 0.390 3.610 5 O -0.423 6.423 6 N -0.355 5.355 7 C 0.039 3.961 8 H 0.092 0.908 9 C -0.161 4.161 10 C -0.182 4.182 11 C 0.045 3.955 12 H 0.088 0.912 13 O -0.397 6.397 14 C -0.149 4.149 15 C -0.152 4.152 16 O -0.056 6.056 17 C -0.042 4.042 18 C 0.061 3.939 19 O -0.236 6.236 20 C 0.081 3.919 21 C -0.174 4.174 22 C -0.074 4.074 23 C -0.129 4.129 24 C -0.185 4.185 25 O -0.375 6.375 26 Si 0.676 3.324 27 C -0.118 4.118 28 C -0.221 4.221 29 C -0.205 4.205 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.252 0.748 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.144 0.856 44 H 0.120 0.880 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.111 0.889 48 H 0.254 0.746 49 H -0.214 1.214 50 H -0.225 1.225 51 H 0.140 0.860 52 H 0.173 0.827 53 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.286 -2.122 2.254 7.007 hybrid contribution -0.397 0.234 0.525 0.699 sum 5.888 -1.888 2.780 6.780 Atomic orbital electron populations 1.20458 0.87350 1.04007 1.03289 1.20976 0.98482 0.91234 0.99108 1.21887 0.81662 0.94926 1.15962 1.16597 0.85653 0.82256 0.76483 1.90860 1.16831 1.82685 1.51939 1.45908 1.10157 1.05808 1.73607 1.21139 0.98826 0.78836 0.97250 0.90817 1.21807 1.02181 0.95958 0.96115 1.22180 0.99295 0.94519 1.02215 1.21894 0.95900 0.80818 0.96935 0.91196 1.86484 1.89948 1.27030 1.36221 1.21426 1.02406 0.95276 0.95802 1.21712 0.97881 0.93147 1.02497 1.83957 1.28092 1.22429 1.71088 1.22314 0.96772 0.80346 1.04768 1.21223 0.91841 0.98080 0.82730 1.86112 1.42094 1.66263 1.29165 1.19034 0.86526 0.91833 0.94536 1.20741 0.98885 1.02386 0.95418 1.21016 0.92988 0.93742 0.99624 1.19674 0.98855 1.00997 0.93347 1.24759 0.96703 0.88536 1.08482 1.86440 1.40736 1.33106 1.77230 0.94354 0.83857 0.80857 0.73291 1.20848 0.96464 0.98159 0.96287 1.21375 0.98223 1.03263 0.99237 1.21887 0.90895 1.01270 1.06410 0.90445 0.89249 0.90939 0.74802 0.92714 0.90058 0.90058 0.92156 0.75595 0.90220 0.91988 0.89118 0.89921 0.85634 0.87997 0.84009 0.83549 0.88862 0.74595 1.21431 1.22539 0.86029 0.82685 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 9.82 71.24 0.70 0.31 16 2 C -0.10 -0.55 6.20 -19.74 -0.12 -0.67 16 3 C -0.09 -0.63 7.13 24.07 0.17 -0.46 16 4 C 0.60 4.64 7.75 86.44 0.67 5.31 16 5 O -0.54 -7.24 14.40 -4.34 -0.06 -7.30 16 6 N -0.70 -1.12 5.07 -446.53 -2.27 -3.39 16 7 C 0.14 0.11 2.45 44.99 0.11 0.22 16 8 H 0.07 0.40 7.58 -2.39 -0.02 0.38 16 9 C -0.12 0.00 5.49 30.59 0.17 0.17 16 10 C -0.14 0.13 5.55 30.60 0.17 0.30 16 11 C 0.10 -0.12 3.47 30.60 0.11 -0.01 16 12 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 13 O -0.59 -0.96 13.32 -148.98 -1.98 -2.95 16 14 C -0.11 0.09 5.57 30.61 0.17 0.26 16 15 C -0.11 0.38 5.39 30.61 0.17 0.55 16 16 O -0.16 -0.72 10.40 -5.07 -0.05 -0.77 16 17 C 0.01 0.02 6.94 24.97 0.17 0.19 16 18 C 0.14 -0.32 5.27 71.24 0.38 0.06 16 19 O -0.32 -1.08 10.12 -92.43 -0.94 -2.02 16 20 C 0.13 0.45 6.69 22.50 0.15 0.60 16 21 C -0.16 -0.59 9.99 22.37 0.22 -0.37 16 22 C -0.06 -0.18 9.60 22.26 0.21 0.03 16 23 C -0.13 -0.48 5.42 -19.85 -0.11 -0.58 16 24 C -0.07 0.11 2.81 71.23 0.20 0.31 16 25 O -0.57 0.62 12.74 -148.98 -1.90 -1.28 16 26 Si 0.77 -2.31 29.78 68.60 2.04 -0.26 16 27 C -0.10 -0.37 8.66 22.26 0.19 -0.18 16 28 C -0.20 -0.34 9.04 22.37 0.20 -0.14 16 29 C -0.19 -0.39 10.73 22.07 0.24 -0.15 16 30 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.07 0.56 6.45 -2.39 -0.02 0.54 16 33 H 0.42 -1.06 8.36 -92.71 -0.77 -1.83 16 34 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 36 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 38 H 0.39 -2.43 9.08 -74.06 -0.67 -3.10 16 39 H 0.08 -0.08 8.14 -2.38 -0.02 -0.10 16 40 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 41 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 42 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.13 -0.92 7.66 -2.39 -0.02 -0.93 16 44 H 0.10 -0.57 7.66 -2.39 -0.02 -0.59 16 45 H 0.14 0.25 8.06 -2.92 -0.02 0.22 16 46 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 47 H 0.09 -0.51 7.96 -2.39 -0.02 -0.53 16 48 H 0.40 -4.64 8.74 -74.06 -0.65 -5.29 16 49 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 50 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 51 H 0.12 0.31 4.87 -2.91 -0.01 0.30 16 52 H 0.16 -0.65 6.30 -2.91 -0.02 -0.66 16 53 H 0.18 -0.53 8.06 -2.91 -0.02 -0.56 16 Total: 0.00 -23.83 432.42 -2.07 -25.90 By element: Atomic # 1 Polarization: -12.59 SS G_CDS: -1.09 Total: -13.68 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.17 Total: 5.75 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -2.27 Total: -3.39 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -4.93 Total: -14.32 kcal Atomic # 14 Polarization: -2.31 SS G_CDS: 2.04 Total: -0.26 kcal Total: -23.83 -2.07 -25.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_4549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.297 kcal (2) G-P(sol) polarization free energy of solvation -23.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds