Wall clock time and date at job start Sat Mar 6 2021 15:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47241 * 2 1 4 4 C 1.50700 * 109.47341 * 240.00126 * 2 1 3 5 5 C 1.38264 * 119.94555 * 119.72100 * 4 2 1 6 6 C 1.38143 * 120.05501 * 179.73030 * 5 4 2 7 7 C 1.38739 * 119.94427 * 0.54557 * 6 5 4 8 8 O 1.35892 * 120.05532 * 179.75042 * 7 6 5 9 9 C 1.42900 * 117.00484 * 359.97438 * 8 7 6 10 10 C 1.50693 * 109.47523 * 179.97438 * 9 8 7 11 11 C 1.36418 * 125.79952 * 89.71607 * 10 9 8 12 12 C 1.47386 * 127.19415 * 359.97438 * 11 10 9 13 13 O 1.21611 * 119.99799 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00106 * 180.02562 * 12 11 10 15 15 C 1.46493 * 120.00016 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47509 * 34.99265 * 15 14 12 17 17 C 1.52999 * 109.47459 * 155.00064 * 15 14 12 18 18 C 1.52998 * 109.47439 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47077 * 299.99609 * 18 17 15 20 20 H 1.09006 * 109.46882 * 300.00209 * 19 18 17 21 21 O 1.42897 * 109.47238 * 179.97438 * 19 18 17 22 22 C 1.52999 * 109.46962 * 59.99674 * 19 18 17 23 23 C 1.52997 * 109.47495 * 300.00466 * 22 19 18 24 24 C 1.47025 * 105.61570 * 179.86942 * 11 10 9 25 25 C 1.34175 * 105.95238 * 0.39468 * 24 11 10 26 26 O 1.33647 * 125.80411 * 270.02352 * 10 9 8 27 27 C 1.38732 * 119.88547 * 359.73141 * 7 6 5 28 28 C 1.38149 * 119.94758 * 359.97438 * 27 7 6 29 29 H 0.96693 * 114.00306 * 59.99646 * 1 2 3 30 30 H 1.09000 * 109.47349 * 120.00016 * 2 1 3 31 31 H 1.48506 * 110.00048 * 298.68597 * 3 2 1 32 32 H 1.48502 * 109.99996 * 59.99922 * 3 2 1 33 33 H 1.08002 * 119.97450 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.02735 * 180.28019 * 6 5 4 35 35 H 1.09008 * 109.46594 * 300.00118 * 9 8 7 36 36 H 1.08998 * 109.47165 * 59.99866 * 9 8 7 37 37 H 0.97004 * 119.99902 * 0.02562 * 14 12 11 38 38 H 1.09001 * 109.46724 * 299.99692 * 17 15 14 39 39 H 1.08997 * 109.47411 * 59.99142 * 17 15 14 40 40 H 1.08993 * 109.47198 * 59.99568 * 18 17 15 41 41 H 1.08999 * 109.47305 * 179.97438 * 18 17 15 42 42 H 0.96702 * 113.99606 * 179.97438 * 21 19 18 43 43 H 1.09006 * 109.46885 * 60.00536 * 22 19 18 44 44 H 1.09001 * 109.47019 * 180.02562 * 22 19 18 45 45 H 1.09001 * 109.46794 * 299.99573 * 23 22 19 46 46 H 1.08999 * 109.47310 * 180.02562 * 23 22 19 47 47 H 1.07997 * 127.02690 * 180.10562 * 24 11 10 48 48 H 1.08002 * 125.43773 * 179.79993 * 25 24 11 49 49 H 1.07998 * 120.02974 * 180.02562 * 27 7 6 50 50 H 1.07992 * 119.97601 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0356 -2.1427 6 6 3.1878 -0.6862 -3.2686 7 6 2.8534 -2.0145 -3.4893 8 8 3.3068 -2.6552 -4.5987 9 6 4.1231 -1.8999 -5.4961 10 6 4.5289 -2.7690 -6.6583 11 6 3.8377 -2.9149 -7.8253 12 6 2.5669 -2.2663 -8.1952 13 8 2.0234 -1.5059 -7.4171 14 7 2.0069 -2.5166 -9.3952 15 6 0.7441 -1.8714 -9.7630 16 1 0.7145 -0.8655 -9.3443 17 6 0.6366 -1.7927 -11.2872 18 6 -0.6825 -1.1195 -11.6714 19 6 -1.8521 -1.9369 -11.1192 20 1 -1.8220 -2.9429 -11.5380 21 8 -3.0841 -1.3079 -11.4775 22 6 -1.7445 -2.0157 -9.5950 23 6 -0.4254 -2.6888 -9.2109 24 6 4.6264 -3.8524 -8.6380 25 6 5.6920 -4.1811 -7.8918 26 8 5.6243 -3.5324 -6.7187 27 6 2.0558 -2.6876 -2.5753 28 6 1.5969 -2.0343 -1.4478 29 1 -0.3933 0.4417 -0.7649 30 1 1.7923 -0.5138 0.8900 31 1 1.5878 2.4586 -1.2242 32 1 1.5615 2.4679 1.2085 33 1 2.9775 0.9998 -1.9730 34 1 3.8086 -0.1600 -3.9786 35 1 3.5610 -1.0410 -5.8630 36 1 5.0145 -1.5542 -4.9728 37 1 2.4399 -3.1239 -10.0153 38 1 1.4700 -1.2107 -11.6806 39 1 0.6662 -2.7986 -11.7060 40 1 -0.7126 -0.1137 -11.2526 41 1 -0.7589 -1.0631 -12.7572 42 1 -3.8701 -1.7731 -11.1600 43 1 -1.7746 -1.0098 -9.1762 44 1 -2.5775 -2.5984 -9.2017 45 1 -0.3954 -3.6948 -9.6296 46 1 -0.3491 -2.7454 -8.1250 47 1 4.3932 -4.2080 -9.6307 48 1 6.4790 -4.8588 -8.1881 49 1 1.7944 -3.7217 -2.7446 50 1 0.9756 -2.5577 -0.7363 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:56 Heat of formation + Delta-G solvation = -114.535722 kcal Electronic energy + Delta-G solvation = -33916.034694 eV Core-core repulsion = 29262.613005 eV Total energy + Delta-G solvation = -4653.421689 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.72715 -41.32937 -41.07755 -39.57715 -39.26373 -37.34091 -37.03353 -34.77170 -33.87107 -32.86185 -32.00392 -31.92380 -31.41944 -29.65568 -27.79666 -26.21183 -24.90190 -23.92173 -23.83538 -23.12477 -22.41435 -21.86305 -21.46630 -20.65954 -19.53380 -19.18206 -18.39300 -18.23679 -17.50247 -17.44664 -17.22877 -16.97617 -16.82102 -16.47743 -16.19383 -16.12366 -15.86610 -15.66115 -15.52910 -15.41703 -14.79770 -14.76002 -14.64904 -14.41735 -14.23274 -14.22167 -13.87305 -13.60110 -13.52816 -13.39812 -13.30228 -13.15842 -12.98580 -12.49397 -12.33361 -12.23175 -12.14738 -12.11802 -11.79948 -11.66879 -11.33732 -11.17827 -10.97873 -10.81056 -10.61985 -10.19671 -10.07880 -9.83867 -9.27115 -4.93891 -0.05390 0.23975 0.26809 1.02931 1.31164 1.50097 1.59474 1.94435 2.01516 2.09582 2.45249 2.61268 3.23649 3.33410 3.41099 3.52143 3.60927 3.66264 3.67119 3.70646 3.77045 3.88485 3.92264 3.98045 4.06204 4.09298 4.17039 4.25049 4.26654 4.34401 4.38595 4.39577 4.45197 4.53748 4.57383 4.64396 4.66631 4.79869 4.84306 4.91730 4.92916 4.97097 5.04876 5.07686 5.11727 5.20150 5.22612 5.25435 5.28076 5.41752 5.44290 5.66136 5.87905 6.23167 6.42870 6.46853 6.83425 7.09093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.077 4.077 3 Si 0.766 3.234 4 C -0.158 4.158 5 C -0.076 4.076 6 C -0.206 4.206 7 C 0.125 3.875 8 O -0.322 6.322 9 C 0.135 3.865 10 C 0.040 3.960 11 C -0.224 4.224 12 C 0.583 3.417 13 O -0.572 6.572 14 N -0.703 5.703 15 C 0.146 3.854 16 H 0.066 0.934 17 C -0.112 4.112 18 C -0.112 4.112 19 C 0.104 3.896 20 H 0.072 0.928 21 O -0.589 6.589 22 C -0.145 4.145 23 C -0.121 4.121 24 C -0.196 4.196 25 C -0.012 4.012 26 O -0.177 6.177 27 C -0.163 4.163 28 C -0.057 4.057 29 H 0.385 0.615 30 H 0.127 0.873 31 H -0.286 1.286 32 H -0.302 1.302 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.416 0.584 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.394 0.606 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.253 0.747 49 H 0.133 0.867 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -3.660 -5.472 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.186 4.186 3 Si 0.671 3.329 4 C -0.158 4.158 5 C -0.093 4.093 6 C -0.224 4.224 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.061 3.939 10 C -0.013 4.013 11 C -0.229 4.229 12 C 0.372 3.628 13 O -0.453 6.453 14 N -0.354 5.354 15 C 0.041 3.959 16 H 0.084 0.916 17 C -0.150 4.150 18 C -0.150 4.150 19 C 0.045 3.955 20 H 0.090 0.910 21 O -0.397 6.397 22 C -0.183 4.183 23 C -0.160 4.160 24 C -0.215 4.215 25 C -0.077 4.077 26 O -0.072 6.072 27 C -0.182 4.182 28 C -0.075 4.075 29 H 0.234 0.766 30 H 0.145 0.855 31 H -0.212 1.212 32 H -0.230 1.230 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.254 0.746 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.244 0.756 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.210 0.790 48 H 0.269 0.731 49 H 0.151 0.849 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.310 -2.414 -4.528 7.384 hybrid contribution -1.490 -0.678 -0.527 1.719 sum 3.821 -3.093 -5.054 7.050 Atomic orbital electron populations 1.86555 1.18699 1.80342 1.50123 1.25173 0.83271 1.11661 0.98502 0.94159 0.90340 0.72107 0.76272 1.20285 1.01918 0.95327 0.98303 1.21018 0.95650 1.00006 0.92673 1.21414 1.06113 0.93756 1.01157 1.19180 0.94619 0.91879 0.86332 1.86044 1.65294 1.40621 1.31736 1.21138 0.95425 0.91205 0.86173 1.22040 0.87096 0.96018 0.96144 1.21393 0.98347 1.05867 0.97288 1.17468 0.83280 0.80197 0.81870 1.90778 1.64598 1.38457 1.51493 1.45701 1.24336 1.48289 1.17081 1.21018 0.82313 0.96417 0.96105 0.91561 1.21693 0.97671 1.03303 0.92323 1.21427 0.92449 0.99189 1.01920 1.21901 0.84447 0.96327 0.92798 0.91023 1.86481 1.16685 1.56206 1.80356 1.22184 0.97825 1.01271 0.97027 1.21793 0.93804 1.00067 1.00354 1.23259 0.95218 1.00230 1.02790 1.24928 1.02125 0.98470 0.82191 1.83794 1.38804 1.46786 1.37844 1.20629 1.01204 1.01437 0.94896 1.20945 0.96948 0.93875 0.95759 0.76603 0.85545 1.21248 1.22993 0.83351 0.83498 0.87701 0.87954 0.74649 0.89566 0.88814 0.92299 0.90079 0.75643 0.92570 0.90437 0.89943 0.93569 0.78982 0.73147 0.84918 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.51 12.77 -148.98 -1.90 -4.42 16 2 C -0.08 -0.10 2.82 71.24 0.20 0.10 16 3 Si 0.77 -0.28 29.78 68.60 2.04 1.76 16 4 C -0.16 -0.46 5.39 -19.85 -0.11 -0.57 16 5 C -0.08 -0.15 8.66 22.25 0.19 0.04 16 6 C -0.21 -0.83 9.04 22.37 0.20 -0.63 16 7 C 0.12 0.97 6.69 22.51 0.15 1.12 16 8 O -0.32 -3.07 10.12 -92.34 -0.93 -4.01 16 9 C 0.13 0.68 4.73 71.23 0.34 1.02 16 10 C 0.04 0.20 7.00 25.26 0.18 0.38 16 11 C -0.22 -0.80 6.31 -18.99 -0.12 -0.92 16 12 C 0.58 3.63 7.78 86.65 0.67 4.31 16 13 O -0.57 -7.84 14.52 -4.07 -0.06 -7.90 16 14 N -0.70 0.56 5.07 -445.86 -2.26 -1.70 16 15 C 0.15 0.00 2.45 44.99 0.11 0.11 16 16 H 0.07 0.38 7.58 -2.39 -0.02 0.36 16 17 C -0.11 0.56 5.39 30.59 0.16 0.73 16 18 C -0.11 0.17 5.57 30.59 0.17 0.34 16 19 C 0.10 -0.13 3.47 30.59 0.11 -0.02 16 20 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 21 O -0.59 -1.02 13.32 -148.98 -1.98 -3.00 16 22 C -0.14 0.01 5.54 30.59 0.17 0.18 16 23 C -0.12 -0.07 5.49 30.59 0.17 0.10 16 24 C -0.20 0.82 10.60 23.65 0.25 1.07 16 25 C -0.01 0.06 12.03 66.89 0.80 0.86 16 26 O -0.18 -0.40 10.52 4.47 0.05 -0.36 16 27 C -0.16 -1.12 9.99 22.37 0.22 -0.89 16 28 C -0.06 -0.26 9.61 22.26 0.21 -0.05 16 29 H 0.38 -0.14 8.70 -74.06 -0.64 -0.78 16 30 H 0.13 -0.09 7.96 -2.39 -0.02 -0.11 16 31 H -0.29 -1.10 7.11 99.48 0.71 -0.39 16 32 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 33 H 0.15 -0.39 4.87 -2.91 -0.01 -0.41 16 34 H 0.15 0.00 6.30 -2.91 -0.02 -0.01 16 35 H 0.11 0.68 6.03 -2.38 -0.01 0.67 16 36 H 0.10 0.00 7.66 -2.39 -0.02 -0.02 16 37 H 0.42 -3.05 7.77 -92.71 -0.72 -3.77 16 38 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.39 -2.31 9.08 -74.06 -0.67 -2.99 16 43 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 44 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.19 -2.23 7.74 -2.91 -0.02 -2.26 16 48 H 0.25 -3.52 8.06 -2.91 -0.02 -3.54 16 49 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16 50 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 Total: 0.00 -25.75 410.02 -1.96 -27.71 By element: Atomic # 1 Polarization: -14.38 SS G_CDS: -0.99 Total: -15.37 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 4.09 Total: 7.29 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -2.26 Total: -1.70 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -4.83 Total: -19.68 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: 2.04 Total: 1.76 kcal Total: -25.75 -1.96 -27.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.826 kcal (2) G-P(sol) polarization free energy of solvation -25.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds