Wall clock time and date at job start Sat Mar 6 2021 15:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86303 * 109.46998 * 2 1 4 4 C 1.50699 * 109.46899 * 240.00177 * 2 1 3 5 5 C 1.38254 * 119.94180 * 119.97775 * 4 2 1 6 6 C 1.38163 * 120.05105 * 179.76742 * 5 4 2 7 7 C 1.38710 * 119.94710 * 0.52350 * 6 5 4 8 8 O 1.35900 * 120.05544 * 179.74802 * 7 6 5 9 9 C 1.42898 * 117.00172 * 359.72769 * 8 7 6 10 10 C 1.50703 * 109.47171 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47199 * 324.99664 * 13 12 10 15 15 C 1.52996 * 109.47084 * 84.99619 * 13 12 10 16 16 C 1.53002 * 109.47141 * 180.02562 * 15 13 12 17 17 C 1.53009 * 109.47090 * 300.00105 * 16 15 13 18 18 H 1.09001 * 109.46866 * 300.00109 * 17 16 15 19 19 O 1.42900 * 109.47167 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.46882 * 59.99780 * 17 16 15 21 21 C 1.53002 * 109.47076 * 204.99915 * 13 12 10 22 22 C 1.38748 * 119.88937 * 359.48005 * 7 6 5 23 23 N 1.48005 * 120.03200 * 180.26768 * 22 7 6 24 24 O 1.21796 * 120.00259 * 179.97438 * 23 22 7 25 25 O 1.21801 * 119.99577 * 359.97438 * 23 22 7 26 26 C 1.38130 * 119.94146 * 0.24813 * 22 7 6 27 27 H 0.96704 * 114.00028 * 299.99970 * 1 2 3 28 28 H 1.09002 * 109.47014 * 120.00278 * 2 1 3 29 29 H 1.48499 * 109.99617 * 178.67986 * 3 2 1 30 30 H 1.48495 * 109.99894 * 299.99926 * 3 2 1 31 31 H 1.08001 * 119.97407 * 0.02562 * 5 4 2 32 32 H 1.08007 * 120.02609 * 180.25965 * 6 5 4 33 33 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 34 34 H 1.09001 * 109.47074 * 60.00171 * 9 8 7 35 35 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47281 * 299.99855 * 15 13 12 37 37 H 1.08999 * 109.47646 * 60.00441 * 15 13 12 38 38 H 1.09004 * 109.47634 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47355 * 59.99915 * 16 15 13 40 40 H 0.96698 * 114.00290 * 59.99827 * 19 17 16 41 41 H 1.09002 * 109.46949 * 180.02562 * 20 17 16 42 42 H 1.08997 * 109.47585 * 60.00535 * 20 17 16 43 43 H 1.08997 * 109.46609 * 299.99518 * 21 13 12 44 44 H 1.09002 * 109.47469 * 59.99768 * 21 13 12 45 45 H 1.08004 * 119.97265 * 180.02562 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7257 -0.0372 -2.1400 6 6 3.1914 -0.6877 -3.2665 7 6 2.8524 -2.0140 -3.4900 8 8 3.3050 -2.6544 -4.5999 9 6 4.1210 -1.8991 -5.4974 10 6 4.5261 -2.7679 -6.6602 11 8 4.1531 -3.9206 -6.7147 12 7 5.3037 -2.2643 -7.6390 13 6 5.6970 -3.1087 -8.7697 14 1 5.8456 -4.1319 -8.4246 15 6 4.5964 -3.0835 -9.8321 16 6 5.0069 -3.9659 -11.0127 17 6 6.3101 -3.4373 -11.6157 18 1 6.1619 -2.4142 -11.9610 19 8 6.6932 -4.2611 -12.7187 20 6 7.4107 -3.4625 -10.5531 21 6 7.0000 -2.5796 -9.3724 22 6 2.0550 -2.6874 -2.5758 23 7 1.6962 -4.1043 -2.8082 24 8 0.9966 -4.6951 -2.0051 25 8 2.1007 -4.6797 -3.8026 26 6 1.5965 -2.0343 -1.4483 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5139 0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 2.9858 0.9968 -1.9677 32 1 3.8154 -0.1626 -3.9746 33 1 3.5591 -1.0399 -5.8637 34 1 5.0129 -1.5537 -4.9744 35 1 5.6023 -1.3424 -7.5952 36 1 3.6682 -3.4605 -9.4028 37 1 4.4479 -2.0603 -10.1773 38 1 4.2230 -3.9476 -11.7700 39 1 5.1552 -4.9890 -10.6674 40 1 6.0408 -4.2920 -13.4318 41 1 8.3389 -3.0856 -10.9825 42 1 7.5590 -4.4856 -10.2077 43 1 6.8514 -1.5564 -9.7175 44 1 7.7841 -2.5975 -8.6154 45 1 0.9761 -2.5581 -0.7361 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11353598_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:02:06 Heat of formation + Delta-G solvation = -121.155780 kcal Electronic energy + Delta-G solvation = -31231.696830 eV Core-core repulsion = 26605.869870 eV Total energy + Delta-G solvation = -4625.826959 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.03281 -41.81080 -41.09475 -39.93580 -39.20226 -37.60216 -37.15261 -36.98832 -34.63479 -33.56920 -32.50243 -32.00471 -30.81203 -28.75765 -27.61436 -26.66291 -24.32415 -24.00778 -23.27575 -22.67075 -21.71113 -21.10967 -20.40801 -19.49257 -19.17038 -18.74193 -18.53329 -18.32048 -18.25821 -17.68796 -17.54129 -17.31546 -16.63170 -16.32166 -16.09173 -15.77232 -15.61998 -15.50735 -15.21498 -14.85253 -14.61620 -14.42514 -14.30281 -14.00545 -13.88095 -13.45938 -13.36981 -13.14641 -13.03945 -12.87193 -12.59779 -12.48803 -12.30011 -12.22471 -12.20606 -11.87839 -11.81459 -11.73960 -11.41070 -11.01256 -10.95159 -10.83754 -10.65935 -10.24781 -9.89451 -5.24155 -1.15123 -0.39378 0.36624 0.51672 0.98094 1.05277 1.36280 1.38348 1.64309 1.90115 2.15065 2.86842 2.98725 3.06910 3.10793 3.33532 3.41940 3.48062 3.51724 3.53296 3.54466 3.62446 3.72787 3.88703 4.00126 4.04089 4.06605 4.12805 4.15284 4.26333 4.26997 4.30512 4.38106 4.51345 4.66063 4.70526 4.82754 4.88843 4.89860 4.97088 5.02027 5.12504 5.18644 5.30381 5.42601 5.69039 6.21740 6.37013 6.63922 6.93829 7.00104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.071 4.071 3 Si 0.691 3.309 4 C -0.111 4.111 5 C -0.032 4.032 6 C -0.208 4.208 7 C 0.200 3.800 8 O -0.252 6.252 9 C 0.030 3.970 10 C 0.514 3.486 11 O -0.493 6.493 12 N -0.725 5.725 13 C 0.145 3.855 14 H 0.095 0.905 15 C -0.128 4.128 16 C -0.150 4.150 17 C 0.103 3.897 18 H 0.056 0.944 19 O -0.568 6.568 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.074 4.074 23 N 0.029 4.971 24 O -0.175 6.175 25 O -0.118 6.118 26 C 0.013 3.987 27 H 0.388 0.612 28 H 0.083 0.917 29 H -0.251 1.251 30 H -0.247 1.247 31 H 0.140 0.860 32 H 0.156 0.844 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.401 0.599 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.380 0.620 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 11.483 1.995 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.181 4.181 3 Si 0.591 3.409 4 C -0.113 4.113 5 C -0.049 4.049 6 C -0.227 4.227 7 C 0.150 3.850 8 O -0.161 6.161 9 C -0.049 4.049 10 C 0.298 3.702 11 O -0.365 6.365 12 N -0.379 5.379 13 C 0.041 3.959 14 H 0.113 0.887 15 C -0.167 4.167 16 C -0.189 4.189 17 C 0.044 3.956 18 H 0.074 0.926 19 O -0.374 6.374 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.158 4.158 23 N 0.549 4.451 24 O -0.384 6.384 25 O -0.341 6.341 26 C -0.006 4.006 27 H 0.236 0.764 28 H 0.101 0.899 29 H -0.176 1.176 30 H -0.172 1.172 31 H 0.157 0.843 32 H 0.174 0.826 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.235 0.765 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.228 0.772 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.680 11.271 1.447 11.945 hybrid contribution -0.400 -0.004 -0.512 0.650 sum 3.280 11.267 0.935 11.772 Atomic orbital electron populations 1.86492 1.16671 1.81999 1.50033 1.24645 0.86298 1.10648 0.96521 0.94652 0.80658 0.77577 0.88000 1.19248 1.01102 0.93220 0.97695 1.21114 0.92899 0.99289 0.91635 1.21200 1.07093 0.92852 1.01530 1.18643 0.90025 0.90671 0.85670 1.86502 1.62879 1.37415 1.29352 1.22745 0.96323 0.94966 0.90830 1.19799 0.79385 0.88153 0.82895 1.90869 1.51944 1.17012 1.76697 1.45860 1.53006 1.16054 1.22948 1.21101 0.93742 0.95993 0.85037 0.88714 1.21874 0.99128 1.00445 0.95236 1.22245 0.97716 1.00859 0.98047 1.21845 0.93610 0.93232 0.86895 0.92643 1.86518 1.48856 1.71134 1.30846 1.21414 0.98274 1.01258 0.93902 1.21774 0.96454 0.99963 0.97896 1.20577 1.10458 0.84154 1.00648 1.43301 0.99193 1.02187 1.00371 1.94550 1.35194 1.66577 1.42051 1.94699 1.54732 1.67523 1.17181 1.20812 0.93037 0.93481 0.93232 0.76364 0.89922 1.17607 1.17179 0.84276 0.82631 0.88101 0.88082 0.76471 0.90753 0.91503 0.91139 0.90540 0.77233 0.90414 0.90591 0.90947 0.90322 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.93 12.74 -35.23 -0.45 0.48 16 2 C -0.07 0.17 2.81 36.01 0.10 0.27 16 3 Si 0.69 -2.62 29.78 -169.99 -5.06 -7.69 16 4 C -0.11 0.00 5.42 -104.60 -0.57 -0.57 16 5 C -0.03 0.03 8.66 -39.60 -0.34 -0.31 16 6 C -0.21 0.29 9.04 -39.43 -0.36 -0.07 16 7 C 0.20 0.40 6.67 -39.22 -0.26 0.14 16 8 O -0.25 -0.76 7.68 -49.78 -0.38 -1.15 16 9 C 0.03 -0.05 5.22 36.01 0.19 0.13 16 10 C 0.51 0.46 7.87 -10.98 -0.09 0.38 16 11 O -0.49 -3.16 16.16 -14.35 -0.23 -3.39 16 12 N -0.72 1.72 5.08 -53.81 -0.27 1.44 16 13 C 0.15 -0.17 2.45 -67.93 -0.17 -0.34 16 14 H 0.09 0.12 7.58 -51.93 -0.39 -0.27 16 15 C -0.13 0.11 5.49 -26.73 -0.15 -0.04 16 16 C -0.15 0.13 5.55 -26.73 -0.15 -0.02 16 17 C 0.10 -0.09 3.47 -26.73 -0.09 -0.18 16 18 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 19 O -0.57 -0.36 13.32 -35.23 -0.47 -0.83 16 20 C -0.11 0.13 5.58 -26.71 -0.15 -0.02 16 21 C -0.12 0.36 5.40 -26.70 -0.14 0.21 16 22 C -0.07 -0.29 6.87 -79.80 -0.55 -0.84 16 23 N 0.03 0.21 4.45 34.03 0.15 0.36 16 24 O -0.17 -1.34 18.45 -29.46 -0.54 -1.88 16 25 O -0.12 -1.08 17.24 -36.49 -0.63 -1.71 16 26 C 0.01 0.02 9.11 -39.61 -0.36 -0.34 16 27 H 0.39 -2.58 8.74 45.56 0.40 -2.18 16 28 H 0.08 -0.33 7.96 -51.93 -0.41 -0.75 16 29 H -0.25 0.47 7.11 56.52 0.40 0.87 16 30 H -0.25 0.24 7.11 56.52 0.40 0.64 16 31 H 0.14 -0.38 4.87 -52.49 -0.26 -0.63 16 32 H 0.16 -0.80 6.30 -52.48 -0.33 -1.13 16 33 H 0.10 -0.49 7.67 -51.93 -0.40 -0.89 16 34 H 0.10 -0.51 7.65 -51.93 -0.40 -0.91 16 35 H 0.40 -2.35 8.60 -40.82 -0.35 -2.70 16 36 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 38 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.38 -1.18 9.08 45.56 0.41 -0.77 16 41 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 43 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 44 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 45 H 0.17 0.21 7.61 -52.48 -0.40 -0.19 16 LS Contribution 378.09 15.07 5.70 5.70 Total: 0.00 -13.40 378.09 -10.40 -23.81 By element: Atomic # 1 Polarization: -8.42 SS G_CDS: -5.13 Total: -13.55 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.08 Total: -1.60 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -0.12 Total: 1.80 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -2.71 Total: -8.48 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: -5.06 Total: -7.69 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -13.40 -10.40 -23.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.348 kcal (2) G-P(sol) polarization free energy of solvation -13.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds