Wall clock time and date at job start Sat Mar 6 2021 15:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86303 * 109.46998 * 2 1 4 4 C 1.50699 * 109.46899 * 240.00177 * 2 1 3 5 5 C 1.38254 * 119.94180 * 119.97775 * 4 2 1 6 6 C 1.38163 * 120.05105 * 179.76742 * 5 4 2 7 7 C 1.38710 * 119.94710 * 0.52350 * 6 5 4 8 8 O 1.35900 * 120.05544 * 179.74802 * 7 6 5 9 9 C 1.42898 * 117.00172 * 359.72769 * 8 7 6 10 10 C 1.50703 * 109.47171 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47199 * 324.99664 * 13 12 10 15 15 C 1.52996 * 109.47084 * 84.99619 * 13 12 10 16 16 C 1.53002 * 109.47141 * 180.02562 * 15 13 12 17 17 C 1.53009 * 109.47090 * 300.00105 * 16 15 13 18 18 H 1.09001 * 109.46866 * 300.00109 * 17 16 15 19 19 O 1.42900 * 109.47167 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.46882 * 59.99780 * 17 16 15 21 21 C 1.53002 * 109.47076 * 204.99915 * 13 12 10 22 22 C 1.38748 * 119.88937 * 359.48005 * 7 6 5 23 23 N 1.48005 * 120.03200 * 180.26768 * 22 7 6 24 24 O 1.21796 * 120.00259 * 179.97438 * 23 22 7 25 25 O 1.21801 * 119.99577 * 359.97438 * 23 22 7 26 26 C 1.38130 * 119.94146 * 0.24813 * 22 7 6 27 27 H 0.96704 * 114.00028 * 299.99970 * 1 2 3 28 28 H 1.09002 * 109.47014 * 120.00278 * 2 1 3 29 29 H 1.48499 * 109.99617 * 178.67986 * 3 2 1 30 30 H 1.48495 * 109.99894 * 299.99926 * 3 2 1 31 31 H 1.08001 * 119.97407 * 0.02562 * 5 4 2 32 32 H 1.08007 * 120.02609 * 180.25965 * 6 5 4 33 33 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 34 34 H 1.09001 * 109.47074 * 60.00171 * 9 8 7 35 35 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47281 * 299.99855 * 15 13 12 37 37 H 1.08999 * 109.47646 * 60.00441 * 15 13 12 38 38 H 1.09004 * 109.47634 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47355 * 59.99915 * 16 15 13 40 40 H 0.96698 * 114.00290 * 59.99827 * 19 17 16 41 41 H 1.09002 * 109.46949 * 180.02562 * 20 17 16 42 42 H 1.08997 * 109.47585 * 60.00535 * 20 17 16 43 43 H 1.08997 * 109.46609 * 299.99518 * 21 13 12 44 44 H 1.09002 * 109.47469 * 59.99768 * 21 13 12 45 45 H 1.08004 * 119.97265 * 180.02562 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7257 -0.0372 -2.1400 6 6 3.1914 -0.6877 -3.2665 7 6 2.8524 -2.0140 -3.4900 8 8 3.3050 -2.6544 -4.5999 9 6 4.1210 -1.8991 -5.4974 10 6 4.5261 -2.7679 -6.6602 11 8 4.1531 -3.9206 -6.7147 12 7 5.3037 -2.2643 -7.6390 13 6 5.6970 -3.1087 -8.7697 14 1 5.8456 -4.1319 -8.4246 15 6 4.5964 -3.0835 -9.8321 16 6 5.0069 -3.9659 -11.0127 17 6 6.3101 -3.4373 -11.6157 18 1 6.1619 -2.4142 -11.9610 19 8 6.6932 -4.2611 -12.7187 20 6 7.4107 -3.4625 -10.5531 21 6 7.0000 -2.5796 -9.3724 22 6 2.0550 -2.6874 -2.5758 23 7 1.6962 -4.1043 -2.8082 24 8 0.9966 -4.6951 -2.0051 25 8 2.1007 -4.6797 -3.8026 26 6 1.5965 -2.0343 -1.4483 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5139 0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 2.9858 0.9968 -1.9677 32 1 3.8154 -0.1626 -3.9746 33 1 3.5591 -1.0399 -5.8637 34 1 5.0129 -1.5537 -4.9744 35 1 5.6023 -1.3424 -7.5952 36 1 3.6682 -3.4605 -9.4028 37 1 4.4479 -2.0603 -10.1773 38 1 4.2230 -3.9476 -11.7700 39 1 5.1552 -4.9890 -10.6674 40 1 6.0408 -4.2920 -13.4318 41 1 8.3389 -3.0856 -10.9825 42 1 7.5590 -4.4856 -10.2077 43 1 6.8514 -1.5564 -9.7175 44 1 7.7841 -2.5975 -8.6154 45 1 0.9761 -2.5581 -0.7361 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:02:05 Heat of formation + Delta-G solvation = -127.771339 kcal Electronic energy + Delta-G solvation = -31231.983702 eV Core-core repulsion = 26605.869870 eV Total energy + Delta-G solvation = -4626.113831 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.39061 -41.91304 -41.11546 -39.90269 -39.21806 -37.66289 -37.43037 -37.01370 -34.65016 -33.64821 -32.45604 -31.91796 -30.76339 -28.66649 -27.92534 -26.55223 -24.37529 -23.92728 -23.29584 -22.72570 -21.71240 -21.04232 -20.53399 -19.87583 -19.27860 -18.75693 -18.66792 -18.36324 -18.22080 -17.68679 -17.53801 -17.27027 -16.53610 -16.27852 -16.00657 -15.82149 -15.54104 -15.42216 -15.17675 -14.82619 -14.54328 -14.30899 -14.20613 -13.95432 -13.84882 -13.40226 -13.30356 -13.08298 -13.01393 -12.77734 -12.72690 -12.53203 -12.42057 -12.33995 -12.22913 -12.22613 -11.97945 -11.79761 -11.33784 -11.10222 -10.99423 -10.81143 -10.43542 -10.22738 -9.86135 -4.89581 -1.42417 -0.37413 0.03539 0.23998 1.10090 1.26984 1.37734 1.67965 1.88834 1.91791 2.21598 2.96441 3.05542 3.22678 3.23858 3.46229 3.48865 3.52740 3.57397 3.65702 3.79317 3.89534 3.92391 3.97746 4.06631 4.12649 4.17159 4.22543 4.25547 4.35367 4.39145 4.39271 4.48094 4.59938 4.68189 4.84691 4.90516 4.93975 4.97150 5.05247 5.08210 5.09360 5.19911 5.25321 5.38673 5.62549 6.36011 6.38632 6.83459 6.85549 7.09116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.568 6.568 2 C -0.088 4.088 3 Si 0.779 3.221 4 C -0.117 4.117 5 C -0.027 4.027 6 C -0.189 4.189 7 C 0.193 3.807 8 O -0.288 6.288 9 C 0.023 3.977 10 C 0.509 3.491 11 O -0.563 6.563 12 N -0.703 5.703 13 C 0.145 3.855 14 H 0.060 0.940 15 C -0.122 4.122 16 C -0.147 4.147 17 C 0.104 3.896 18 H 0.075 0.925 19 O -0.590 6.590 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.101 4.101 23 N 0.034 4.966 24 O -0.189 6.189 25 O -0.175 6.175 26 C 0.002 3.998 27 H 0.407 0.593 28 H 0.099 0.901 29 H -0.270 1.270 30 H -0.282 1.282 31 H 0.163 0.837 32 H 0.203 0.797 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.423 0.577 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.394 0.606 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 15.973 2.390 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.196 4.196 3 Si 0.681 3.319 4 C -0.118 4.118 5 C -0.044 4.044 6 C -0.207 4.207 7 C 0.143 3.857 8 O -0.198 6.198 9 C -0.054 4.054 10 C 0.294 3.706 11 O -0.440 6.440 12 N -0.357 5.357 13 C 0.040 3.960 14 H 0.078 0.922 15 C -0.161 4.161 16 C -0.186 4.186 17 C 0.045 3.955 18 H 0.093 0.907 19 O -0.399 6.399 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.186 4.186 23 N 0.546 4.454 24 O -0.399 6.399 25 O -0.387 6.387 26 C -0.017 4.017 27 H 0.259 0.741 28 H 0.116 0.884 29 H -0.196 1.196 30 H -0.209 1.209 31 H 0.180 0.820 32 H 0.220 0.780 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.244 0.756 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.934 15.760 1.791 16.611 hybrid contribution -0.792 -1.293 -0.609 1.634 sum 4.143 14.467 1.182 15.095 Atomic orbital electron populations 1.86445 1.17111 1.82706 1.51601 1.25028 0.86231 1.12363 0.95993 0.93431 0.78073 0.74264 0.86084 1.19700 1.00832 0.92420 0.98889 1.21495 0.91655 1.00181 0.91089 1.21683 1.06137 0.91021 1.01907 1.18858 0.89870 0.91721 0.85210 1.86475 1.63690 1.39520 1.30125 1.23135 0.98070 0.94576 0.89571 1.20448 0.78689 0.87620 0.83835 1.90852 1.54755 1.20124 1.78304 1.45668 1.51562 1.16861 1.21639 1.21004 0.94829 0.94867 0.85286 0.92202 1.21806 0.97864 1.01365 0.95070 1.22205 0.98446 0.99632 0.98295 1.21918 0.93128 0.93819 0.86595 0.90726 1.86483 1.49980 1.71686 1.31739 1.21460 0.98550 1.00616 0.94608 1.21697 0.95222 1.00642 0.97218 1.20879 1.12991 0.81915 1.02836 1.43794 0.98333 1.03709 0.99579 1.94493 1.35496 1.68000 1.41932 1.94688 1.56535 1.69170 1.18343 1.20893 0.93593 0.94448 0.92746 0.74062 0.88357 1.19626 1.20851 0.82002 0.78002 0.84120 0.83950 0.73811 0.93582 0.89248 0.90389 0.92951 0.75640 0.90056 0.92642 0.88284 0.89475 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.40 12.74 -148.98 -1.90 0.50 16 2 C -0.09 0.54 2.81 71.24 0.20 0.74 16 3 Si 0.78 -7.78 29.78 68.60 2.04 -5.74 16 4 C -0.12 0.10 5.42 -19.85 -0.11 -0.01 16 5 C -0.03 0.12 8.66 22.26 0.19 0.32 16 6 C -0.19 1.04 9.04 22.36 0.20 1.24 16 7 C 0.19 0.78 6.67 22.50 0.15 0.93 16 8 O -0.29 -1.99 7.68 -63.41 -0.49 -2.48 16 9 C 0.02 -0.12 5.22 71.24 0.37 0.25 16 10 C 0.51 1.23 7.87 87.66 0.69 1.92 16 11 O -0.56 -9.16 16.16 16.01 0.26 -8.90 16 12 N -0.70 3.84 5.08 -442.54 -2.25 1.60 16 13 C 0.14 -0.24 2.45 44.99 0.11 -0.13 16 14 H 0.06 0.35 7.58 -2.39 -0.02 0.33 16 15 C -0.12 0.11 5.49 30.59 0.17 0.28 16 16 C -0.15 0.05 5.55 30.60 0.17 0.22 16 17 C 0.10 -0.18 3.47 30.60 0.11 -0.08 16 18 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 19 O -0.59 -1.03 13.32 -148.98 -1.98 -3.02 16 20 C -0.11 0.24 5.58 30.61 0.17 0.41 16 21 C -0.11 0.75 5.40 30.61 0.17 0.92 16 22 C -0.10 -0.98 6.87 36.47 0.25 -0.73 16 23 N 0.03 0.62 4.45 -46.24 -0.21 0.41 16 24 O -0.19 -3.60 18.45 18.89 0.35 -3.25 16 25 O -0.17 -4.02 17.24 25.61 0.44 -3.58 16 26 C 0.00 0.01 9.11 22.25 0.20 0.21 16 27 H 0.41 -5.89 8.74 -74.05 -0.65 -6.54 16 28 H 0.10 -0.94 7.96 -2.39 -0.02 -0.96 16 29 H -0.27 1.81 7.11 99.48 0.71 2.51 16 30 H -0.28 1.16 7.11 99.48 0.71 1.87 16 31 H 0.16 -1.47 4.87 -2.91 -0.01 -1.49 16 32 H 0.20 -3.15 6.30 -2.91 -0.02 -3.17 16 33 H 0.14 -1.89 7.67 -2.39 -0.02 -1.90 16 34 H 0.14 -1.96 7.65 -2.39 -0.02 -1.98 16 35 H 0.42 -6.18 8.60 -92.70 -0.80 -6.98 16 36 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.39 -2.31 9.08 -74.06 -0.67 -2.98 16 41 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 44 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.16 0.75 7.61 -2.91 -0.02 0.73 16 Total: 0.00 -39.51 378.09 -1.69 -41.21 By element: Atomic # 1 Polarization: -22.24 SS G_CDS: -1.01 Total: -23.25 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 3.04 Total: 6.49 kcal Atomic # 7 Polarization: 4.46 SS G_CDS: -2.45 Total: 2.01 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -3.32 Total: -20.73 kcal Atomic # 14 Polarization: -7.78 SS G_CDS: 2.04 Total: -5.74 kcal Total: -39.51 -1.69 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.563 kcal (2) G-P(sol) polarization free energy of solvation -39.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds