Wall clock time and date at job start Sat Mar 6 2021 15:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47233 * 2 1 4 4 C 1.50700 * 109.47027 * 119.99905 * 2 1 3 5 5 C 1.38243 * 119.97198 * 245.02227 * 4 2 1 6 6 C 1.38291 * 120.11524 * 179.97438 * 5 4 2 7 7 C 1.38123 * 120.04980 * 359.76159 * 6 5 4 8 8 C 1.38753 * 119.94792 * 0.51501 * 7 6 5 9 9 O 1.35900 * 120.05890 * 179.74024 * 8 7 6 10 10 C 1.42901 * 116.99993 * 359.72678 * 9 8 7 11 11 C 1.50696 * 109.47343 * 179.97438 * 10 9 8 12 12 C 1.39552 * 120.07488 * 180.02562 * 11 10 9 13 13 C 1.47848 * 120.14551 * 0.02562 * 12 11 10 14 14 O 1.21550 * 119.99786 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00044 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99856 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47369 * 324.99925 * 16 15 13 18 18 C 1.52996 * 109.47315 * 85.00362 * 16 15 13 19 19 C 1.52999 * 109.47387 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.46874 * 299.99817 * 19 18 16 21 21 H 1.09001 * 109.46884 * 299.99998 * 20 19 18 22 22 O 1.42897 * 109.46817 * 179.97438 * 20 19 18 23 23 C 1.52996 * 109.46964 * 59.99924 * 20 19 18 24 24 C 1.52999 * 109.47387 * 299.99762 * 23 20 19 25 25 C 1.39603 * 119.71156 * 179.97438 * 12 11 10 26 26 C 1.37931 * 119.85013 * 0.02562 * 25 12 11 27 27 C 1.38377 * 120.15012 * 359.97438 * 26 25 12 28 28 C 1.37985 * 120.07293 * 359.97438 * 11 10 9 29 29 C 1.38170 * 119.97463 * 64.99887 * 4 2 1 30 30 H 0.96700 * 114.00059 * 60.00293 * 1 2 3 31 31 H 1.09000 * 109.47370 * 239.99618 * 2 1 3 32 32 H 1.48500 * 110.00259 * 59.99798 * 3 2 1 33 33 H 1.48498 * 110.00040 * 181.32135 * 3 2 1 34 34 H 1.07998 * 119.94317 * 359.97438 * 5 4 2 35 35 H 1.07992 * 119.97750 * 180.02562 * 6 5 4 36 36 H 1.08006 * 120.02694 * 180.27497 * 7 6 5 37 37 H 1.09006 * 109.47114 * 59.99611 * 10 9 8 38 38 H 1.08999 * 109.46841 * 299.99785 * 10 9 8 39 39 H 0.96998 * 120.00104 * 0.02562 * 15 13 12 40 40 H 1.09004 * 109.47063 * 300.00457 * 18 16 15 41 41 H 1.09001 * 109.47260 * 59.99495 * 18 16 15 42 42 H 1.09000 * 109.47171 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.46976 * 59.99971 * 19 18 16 44 44 H 0.96703 * 114.00229 * 60.00650 * 22 20 19 45 45 H 1.09004 * 109.47063 * 179.97438 * 23 20 19 46 46 H 1.09001 * 109.47260 * 60.00304 * 23 20 19 47 47 H 1.08992 * 109.46976 * 300.00029 * 24 23 20 48 48 H 1.09000 * 109.47171 * 179.97438 * 24 23 20 49 49 H 1.07995 * 120.07275 * 180.02562 * 25 12 11 50 50 H 1.07999 * 119.92387 * 180.02562 * 26 25 12 51 51 H 1.08000 * 119.85899 * 180.02562 * 27 26 25 52 52 H 1.07998 * 119.92509 * 359.74417 * 28 11 10 53 53 H 1.07995 * 120.02568 * 359.97438 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6383 -0.0115 2.1912 6 6 3.1002 -0.6604 3.3217 7 6 2.8517 -2.0078 3.4960 8 6 2.1473 -2.7128 2.5305 9 8 1.9062 -4.0398 2.6971 10 6 2.4123 -4.6467 3.8878 11 6 2.0503 -6.1095 3.8990 12 6 2.4381 -6.9177 4.9685 13 6 3.2045 -6.3422 6.0943 14 8 3.4986 -5.1629 6.0893 15 7 3.5771 -7.1253 7.1260 16 6 4.3370 -6.5552 8.2412 17 1 5.0127 -5.7869 7.8653 18 6 3.3709 -5.9345 9.2522 19 6 4.1645 -5.3385 10.4166 20 6 4.9764 -6.4418 11.0980 21 1 4.3010 -7.2102 11.4742 22 8 5.7181 -5.8851 12.1852 23 6 5.9425 -7.0625 10.0870 24 6 5.1488 -7.6585 8.9226 25 6 2.0982 -8.2717 4.9714 26 6 1.3826 -8.8022 3.9183 27 6 1.0012 -7.9953 2.8608 28 6 1.3338 -6.6526 2.8523 29 6 1.6845 -2.0595 1.3978 30 1 -0.3933 0.4417 -0.7651 31 1 1.7924 -0.5139 -0.8899 32 1 1.5615 2.4679 1.2084 33 1 3.5346 1.7702 -0.0322 34 1 2.8302 1.0429 2.0586 35 1 3.6518 -0.1122 4.0710 36 1 3.2088 -2.5132 4.3812 37 1 1.9754 -4.1579 4.7587 38 1 3.4966 -4.5401 3.9172 39 1 3.3427 -8.0665 7.1298 40 1 2.7927 -5.1482 8.7668 41 1 2.6952 -6.7028 9.6281 42 1 3.4762 -4.8967 11.1370 43 1 4.8398 -4.5701 10.0403 44 1 5.1687 -5.4732 12.8661 45 1 6.5212 -7.8483 10.5726 46 1 6.6179 -6.2942 9.7108 47 1 4.4736 -8.4269 9.2989 48 1 5.8372 -8.1003 8.2022 49 1 2.3950 -8.9024 5.7963 50 1 1.1187 -9.8494 3.9195 51 1 0.4406 -8.4155 2.0388 52 1 1.0288 -6.0271 2.0263 53 1 1.1315 -2.6049 0.6474 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_4557126.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:02:13 Heat of formation + Delta-G solvation = -102.014540 kcal Electronic energy + Delta-G solvation = -35001.340132 eV Core-core repulsion = 30383.379835 eV Total energy + Delta-G solvation = -4617.960297 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.90035 -41.29300 -40.23119 -39.30478 -38.90591 -37.35309 -37.07691 -34.79149 -33.38099 -32.74793 -32.33148 -31.92679 -31.17855 -29.42415 -27.89236 -26.67068 -25.03925 -23.94869 -23.90308 -23.50338 -22.71400 -21.85477 -21.55963 -21.01318 -19.05268 -18.96817 -18.42295 -18.24465 -17.66967 -17.57574 -17.49375 -17.25797 -16.67968 -16.39877 -16.15867 -16.02142 -15.70011 -15.57022 -15.50957 -15.37535 -14.86941 -14.71462 -14.68012 -14.52047 -14.33389 -14.21622 -14.07997 -13.67651 -13.49336 -13.40411 -13.30921 -13.26674 -13.05512 -12.77404 -12.51687 -12.45124 -12.30040 -12.24476 -12.22652 -12.22478 -11.88645 -11.79549 -11.33788 -10.98955 -10.80864 -10.41438 -10.32200 -10.06301 -10.00976 -9.86262 -9.45136 -4.95777 -0.29588 0.01367 0.17382 0.23747 1.26173 1.64170 1.72634 1.88080 1.94673 1.97713 2.45099 2.70339 3.22461 3.33597 3.47028 3.50346 3.58521 3.65934 3.66238 3.76068 3.78975 3.82930 3.97506 4.01183 4.05272 4.06746 4.10942 4.16071 4.17111 4.24181 4.25268 4.32173 4.34707 4.38091 4.39331 4.40425 4.55977 4.60007 4.70272 4.79003 4.83245 4.88245 4.90690 4.96641 5.04044 5.04340 5.07063 5.13234 5.18213 5.20210 5.23113 5.25784 5.30712 5.39185 5.42060 5.52839 5.80033 6.18266 6.38506 6.82806 6.89215 7.04380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.083 4.083 3 Si 0.786 3.214 4 C -0.051 4.051 5 C -0.178 4.178 6 C -0.076 4.076 7 C -0.210 4.210 8 C 0.124 3.876 9 O -0.321 6.321 10 C 0.116 3.884 11 C -0.053 4.053 12 C -0.148 4.148 13 C 0.555 3.445 14 O -0.572 6.572 15 N -0.706 5.706 16 C 0.145 3.855 17 H 0.066 0.934 18 C -0.121 4.121 19 C -0.145 4.145 20 C 0.103 3.897 21 H 0.072 0.928 22 O -0.590 6.590 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.076 4.076 26 C -0.122 4.122 27 C -0.088 4.088 28 C -0.123 4.123 29 C -0.134 4.134 30 H 0.405 0.595 31 H 0.097 0.903 32 H -0.296 1.296 33 H -0.288 1.288 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.416 0.584 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.394 0.606 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.162 0.838 50 H 0.163 0.837 51 H 0.153 0.847 52 H 0.133 0.867 53 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -5.742 -1.267 6.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.192 4.192 3 Si 0.692 3.308 4 C -0.051 4.051 5 C -0.196 4.196 6 C -0.094 4.094 7 C -0.229 4.229 8 C 0.078 3.922 9 O -0.236 6.236 10 C 0.042 3.958 11 C -0.054 4.054 12 C -0.151 4.151 13 C 0.344 3.656 14 O -0.453 6.453 15 N -0.357 5.357 16 C 0.040 3.960 17 H 0.084 0.916 18 C -0.160 4.160 19 C -0.183 4.183 20 C 0.045 3.955 21 H 0.090 0.910 22 O -0.398 6.398 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.094 4.094 26 C -0.140 4.140 27 C -0.106 4.106 28 C -0.141 4.141 29 C -0.153 4.153 30 H 0.256 0.744 31 H 0.115 0.885 32 H -0.224 1.224 33 H -0.216 1.216 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.244 0.756 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.179 0.821 50 H 0.181 0.819 51 H 0.171 0.829 52 H 0.151 0.849 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.238 -5.026 -0.758 5.232 hybrid contribution -0.249 -0.193 0.876 0.931 sum -1.487 -5.219 0.118 5.428 Atomic orbital electron populations 1.86452 1.16963 1.82492 1.51430 1.24931 0.86114 1.11477 0.96697 0.94428 0.77188 0.74788 0.84431 1.19533 0.96680 0.93132 0.95752 1.21003 1.03210 0.99482 0.95908 1.21137 0.97419 0.93774 0.97081 1.21514 1.04448 0.96129 1.00780 1.19143 0.95228 0.82978 0.94821 1.85936 1.74597 1.19986 1.43040 1.21531 0.98861 0.90398 0.85016 1.19679 0.97738 0.93207 0.94825 1.19668 1.04516 0.95628 0.95320 1.18508 0.78809 0.85783 0.82511 1.90742 1.57121 1.17366 1.80052 1.45817 1.56266 1.13667 1.19979 1.21024 0.92715 0.96531 0.85687 0.91589 1.21796 0.98115 1.00621 0.95468 1.22183 0.99290 0.98810 0.98053 1.21906 0.92661 0.94133 0.86806 0.90984 1.86484 1.39366 1.78710 1.35239 1.21428 0.97887 1.00720 0.94992 1.21702 0.99267 0.97127 0.97007 1.21599 0.95929 0.92297 0.99602 1.21589 0.97466 1.01833 0.93071 1.21777 0.97026 0.92705 0.99123 1.21129 0.98249 0.96501 0.98208 1.20377 1.03351 0.94016 0.97547 0.74375 0.88510 1.22392 1.21583 0.85917 0.83451 0.84535 0.90724 0.90570 0.74584 0.93252 0.89801 0.90383 0.92608 0.75643 0.90174 0.92398 0.88691 0.89678 0.82069 0.81905 0.82918 0.84907 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.31 12.81 -148.98 -1.91 -3.22 16 2 C -0.08 -0.20 2.79 71.24 0.20 0.00 16 3 Si 0.79 -0.05 29.85 68.60 2.05 2.00 16 4 C -0.05 -0.47 5.38 -19.88 -0.11 -0.58 16 5 C -0.18 -1.75 8.67 22.28 0.19 -1.55 16 6 C -0.08 -0.70 10.04 22.25 0.22 -0.48 16 7 C -0.21 -2.28 9.04 22.37 0.20 -2.08 16 8 C 0.12 1.47 6.69 22.51 0.15 1.62 16 9 O -0.32 -3.60 8.62 -92.42 -0.80 -4.39 16 10 C 0.12 1.14 3.38 71.23 0.24 1.38 16 11 C -0.05 -0.35 5.91 -19.61 -0.12 -0.47 16 12 C -0.15 -0.45 5.87 -20.09 -0.12 -0.57 16 13 C 0.56 2.72 7.72 86.79 0.67 3.39 16 14 O -0.57 -6.85 13.07 -3.87 -0.05 -6.90 16 15 N -0.71 1.47 5.03 -445.42 -2.24 -0.77 16 16 C 0.14 -0.14 2.45 44.99 0.11 -0.03 16 17 H 0.07 0.32 7.58 -2.39 -0.02 0.31 16 18 C -0.12 0.09 5.49 30.59 0.17 0.26 16 19 C -0.14 0.13 5.55 30.59 0.17 0.30 16 20 C 0.10 -0.17 3.47 30.59 0.11 -0.07 16 21 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 22 O -0.59 -0.89 13.32 -148.98 -1.98 -2.87 16 23 C -0.11 0.20 5.57 30.59 0.17 0.37 16 24 C -0.11 0.62 5.39 30.59 0.16 0.79 16 25 C -0.08 0.29 9.54 22.53 0.21 0.51 16 26 C -0.12 0.58 10.03 22.23 0.22 0.81 16 27 C -0.09 0.15 10.04 22.33 0.22 0.38 16 28 C -0.12 -0.47 9.37 22.23 0.21 -0.26 16 29 C -0.13 -1.42 9.62 22.37 0.22 -1.20 16 30 H 0.40 -3.64 8.74 -74.06 -0.65 -4.29 16 31 H 0.10 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H -0.30 -2.18 7.05 99.48 0.70 -1.48 16 33 H -0.29 -1.55 7.11 99.48 0.71 -0.85 16 34 H 0.12 0.99 4.86 -2.91 -0.01 0.97 16 35 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.14 1.39 6.30 -2.91 -0.02 1.37 16 37 H 0.07 0.88 6.85 -2.38 -0.02 0.87 16 38 H 0.08 0.88 6.88 -2.39 -0.02 0.86 16 39 H 0.42 -3.66 6.64 -92.71 -0.62 -4.27 16 40 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.39 -2.41 9.08 -74.06 -0.67 -3.09 16 45 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.16 -1.82 6.41 -2.91 -0.02 -1.84 16 50 H 0.16 -1.76 8.06 -2.91 -0.02 -1.78 16 51 H 0.15 -0.98 8.06 -2.91 -0.02 -1.01 16 52 H 0.13 0.60 7.00 -2.91 -0.02 0.58 16 53 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 Total: 0.00 -25.55 422.67 -2.36 -27.90 By element: Atomic # 1 Polarization: -13.32 SS G_CDS: -0.94 Total: -14.26 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 3.51 Total: 2.51 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -2.24 Total: -0.77 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -4.74 Total: -17.39 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: 2.05 Total: 2.00 kcal Total: -25.55 -2.36 -27.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_4557126.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.111 kcal (2) G-P(sol) polarization free energy of solvation -25.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds