Wall clock time and date at job start Sat Mar 6 2021 15:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33810 * 122.45271 * 2 1 4 4 C 1.50703 * 124.52117 * 0.04147 * 3 2 1 5 5 O 1.42894 * 109.47098 * 329.99739 * 4 3 2 6 6 Si 1.86303 * 109.46977 * 210.00078 * 4 3 2 7 7 S 1.70622 * 110.95627 * 180.02562 * 3 2 1 8 8 C 1.75832 * 91.56119 * 359.97438 * 7 3 2 9 9 C 1.46582 * 125.45664 * 179.97438 * 8 7 3 10 10 O 1.21699 * 120.00279 * 180.02562 * 9 8 7 11 11 N 1.34782 * 120.00089 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00074 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46813 * 35.00305 * 12 11 9 14 14 C 1.53000 * 109.46840 * 155.00031 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 12 17 17 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 18 18 O 1.42900 * 109.46976 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 20 20 C 1.52996 * 109.47185 * 275.00149 * 12 11 9 21 21 C 1.36646 * 109.08233 * 0.26382 * 8 7 3 22 22 H 1.09000 * 109.46513 * 89.99799 * 1 2 3 23 23 H 1.08994 * 109.46960 * 210.00386 * 1 2 3 24 24 H 1.09003 * 109.46434 * 330.00427 * 1 2 3 25 25 H 1.08999 * 109.47080 * 90.00530 * 4 3 2 26 26 H 0.96698 * 113.99987 * 180.02562 * 5 4 3 27 27 H 1.48503 * 110.00275 * 59.99873 * 6 4 3 28 28 H 1.48505 * 110.00012 * 181.31787 * 6 4 3 29 29 H 0.97002 * 119.99499 * 0.02562 * 11 9 8 30 30 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 31 31 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 32 32 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 33 33 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 34 34 H 0.96708 * 114.00004 * 59.99909 * 18 16 15 35 35 H 1.09002 * 109.47045 * 180.02562 * 19 16 15 36 36 H 1.09001 * 109.47375 * 59.99966 * 19 16 15 37 37 H 1.08992 * 109.47554 * 299.99819 * 20 12 11 38 38 H 1.09004 * 109.47108 * 60.00069 * 20 12 11 39 39 H 1.08001 * 123.34656 * 179.73698 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1291 0.0000 4 6 1.6356 2.5161 0.0009 5 8 0.3751 2.4984 -0.6720 6 14 2.7921 3.6829 -0.8776 7 16 3.8971 0.7891 -0.0007 8 6 3.5937 -0.9429 -0.0002 9 6 4.6231 -1.9864 -0.0010 10 8 4.3001 -3.1598 -0.0011 11 7 5.9273 -1.6465 -0.0017 12 6 6.9561 -2.6895 -0.0020 13 1 6.6116 -3.5394 -0.5911 14 6 8.2447 -2.1346 -0.6124 15 6 9.3189 -3.2240 -0.6132 16 6 9.5884 -3.6757 0.8236 17 1 9.9331 -2.8260 1.4130 18 8 10.5913 -4.6936 0.8227 19 6 8.2998 -4.2306 1.4339 20 6 7.2254 -3.1405 1.4350 21 6 2.2446 -1.1601 -0.0055 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3632 0.8901 0.5138 25 1 1.4942 2.8501 1.0288 26 1 -0.0626 3.3598 -0.7099 27 1 2.9933 3.2385 -2.2802 28 1 2.2372 5.0602 -0.8559 29 1 6.1847 -0.7113 -0.0013 30 1 8.0528 -1.8132 -1.6361 31 1 8.5891 -1.2846 -0.0232 32 1 8.9743 -4.0737 -1.2025 33 1 10.2371 -2.8286 -1.0476 34 1 11.4375 -4.4118 0.4487 35 1 8.4917 -4.5520 2.4576 36 1 7.9551 -5.0802 0.8445 37 1 7.5698 -2.2907 2.0241 38 1 6.3073 -3.5359 1.8698 39 1 1.8019 -2.1452 -0.0105 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:02:51 Heat of formation + Delta-G solvation = -96.900625 kcal Electronic energy + Delta-G solvation = -21904.872043 eV Core-core repulsion = 18518.947740 eV Total energy + Delta-G solvation = -3385.924303 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28907 -40.02273 -39.38200 -37.55340 -36.96586 -34.61155 -32.35126 -31.88123 -30.23470 -29.56188 -26.39488 -24.48202 -23.86692 -22.96557 -21.76765 -21.07937 -20.00676 -19.17836 -18.53229 -18.20475 -17.62533 -17.02401 -16.58314 -16.24186 -16.07978 -15.60957 -15.47461 -14.97032 -14.78998 -14.57401 -14.52648 -14.20652 -14.08267 -13.58903 -13.27558 -13.25594 -13.14194 -12.96904 -12.82524 -12.59302 -12.42656 -12.17568 -12.13431 -12.00407 -11.88077 -11.31189 -11.22673 -10.81886 -10.77765 -10.25352 -9.61832 -9.35886 -5.13096 -0.67105 0.27634 0.67008 1.05047 1.33286 1.53000 1.89577 1.94039 2.05384 3.22809 3.29032 3.54956 3.63189 3.65811 3.76140 4.04048 4.10633 4.11967 4.19587 4.31212 4.32182 4.35822 4.40894 4.44024 4.56185 4.64539 4.81584 4.85036 4.88434 4.95815 4.98135 5.02009 5.09709 5.11401 5.22449 5.29349 5.38397 5.41655 5.43037 6.33587 6.55187 6.91556 7.01260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.041 4.041 5 O -0.542 6.542 6 Si 0.734 3.266 7 S 0.276 5.724 8 C -0.289 4.289 9 C 0.591 3.409 10 O -0.572 6.572 11 N -0.708 5.708 12 C 0.143 3.857 13 H 0.066 0.934 14 C -0.117 4.117 15 C -0.144 4.144 16 C 0.103 3.897 17 H 0.074 0.926 18 O -0.591 6.591 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.062 4.062 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.398 0.602 27 H -0.292 1.292 28 H -0.258 1.258 29 H 0.413 0.587 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.395 0.605 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.956 8.920 1.458 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.325 4.325 4 C -0.152 4.152 5 O -0.353 6.353 6 Si 0.635 3.365 7 S 0.544 5.456 8 C -0.409 4.409 9 C 0.378 3.622 10 O -0.453 6.453 11 N -0.360 5.360 12 C 0.039 3.961 13 H 0.084 0.916 14 C -0.155 4.155 15 C -0.182 4.182 16 C 0.045 3.955 17 H 0.092 0.908 18 O -0.400 6.400 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.096 4.096 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.131 0.869 26 H 0.250 0.750 27 H -0.219 1.219 28 H -0.182 1.182 29 H 0.250 0.750 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.859 8.616 1.003 9.942 hybrid contribution -2.357 -0.367 -0.589 2.457 sum 2.502 8.249 0.414 8.630 Atomic orbital electron populations 1.20469 0.88468 1.02799 1.02308 1.18764 0.98973 0.90705 1.03908 1.23741 0.99548 0.99280 1.09928 1.24282 0.91534 0.96325 1.03041 1.86651 1.31976 1.37230 1.79405 0.94808 0.84392 0.76644 0.80624 1.82183 1.00471 0.95370 1.67531 1.24623 0.97556 0.98743 1.19945 1.17173 0.82588 0.86993 0.75425 1.90830 1.82376 1.20127 1.51953 1.45806 1.04377 1.11076 1.74700 1.21095 0.87719 0.90428 0.96841 0.91562 1.21735 0.92173 0.99125 1.02473 1.22181 1.00042 0.98814 0.97188 1.21891 0.87991 0.90048 0.95592 0.90791 1.86498 1.25786 1.41447 1.86242 1.21425 0.93819 0.98219 1.01580 1.21807 0.98186 0.99200 0.96607 1.20742 0.91573 1.00099 0.97192 0.91845 0.92031 0.89831 0.86860 0.75017 1.21894 1.18200 0.75016 0.89945 0.88521 0.92288 0.88917 0.75474 0.91289 0.92784 0.89371 0.92952 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 8.70 71.24 0.62 0.39 16 2 C -0.11 -0.50 5.75 -21.05 -0.12 -0.62 16 3 C -0.21 -0.14 5.57 24.68 0.14 -0.01 16 4 C -0.04 0.16 2.75 71.24 0.20 0.36 16 5 O -0.54 1.25 9.81 -148.98 -1.46 -0.21 16 6 Si 0.73 -3.61 31.31 68.60 2.15 -1.47 16 7 S 0.28 -0.76 19.80 -56.49 -1.12 -1.88 16 8 C -0.29 -1.42 6.45 24.08 0.16 -1.26 16 9 C 0.59 4.55 7.75 86.42 0.67 5.22 16 10 O -0.57 -9.46 16.50 -4.35 -0.07 -9.53 16 11 N -0.71 -0.13 5.07 -446.59 -2.27 -2.39 16 12 C 0.14 0.05 2.45 44.99 0.11 0.16 16 13 H 0.07 0.42 7.58 -2.39 -0.02 0.40 16 14 C -0.12 0.69 5.39 30.59 0.16 0.85 16 15 C -0.14 0.63 5.55 30.60 0.17 0.80 16 16 C 0.10 -0.18 3.47 30.60 0.11 -0.07 16 17 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 18 O -0.59 -0.77 13.32 -148.98 -1.98 -2.76 16 19 C -0.11 -0.23 5.57 30.61 0.17 -0.06 16 20 C -0.12 -0.10 5.50 30.61 0.17 0.07 16 21 C -0.06 -0.42 9.80 21.72 0.21 -0.21 16 22 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 23 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 24 H 0.08 0.11 6.41 -2.39 -0.02 0.10 16 25 H 0.11 -0.98 7.96 -2.39 -0.02 -1.00 16 26 H 0.40 -4.17 8.74 -74.06 -0.65 -4.82 16 27 H -0.29 -1.04 7.11 99.48 0.71 -0.33 16 28 H -0.26 0.57 7.11 99.48 0.71 1.28 16 29 H 0.41 -2.57 7.72 -92.71 -0.72 -3.29 16 30 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.40 -2.91 9.08 -74.05 -0.67 -3.58 16 35 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 Total: 0.00 -21.76 329.81 -2.90 -24.66 By element: Atomic # 1 Polarization: -11.14 SS G_CDS: -0.91 Total: -12.05 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 2.76 Total: 5.63 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -2.27 Total: -2.39 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -3.52 Total: -12.50 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.15 Total: -1.47 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.12 Total: -1.88 kcal Total: -21.76 -2.90 -24.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.240 kcal (2) G-P(sol) polarization free energy of solvation -21.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds